Wall clock time and date at job start Tue Mar 31 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00118 * 2 1 4 4 H 1.07998 * 119.99974 * 160.14255 * 3 2 1 5 5 C 1.38813 * 120.00136 * 340.14108 * 3 2 1 6 6 N 1.31618 * 119.99440 * 342.06998 * 5 3 2 7 7 Si 1.86796 * 120.00207 * 162.06938 * 5 3 2 8 8 H 1.48502 * 109.47154 * 84.99430 * 7 5 3 9 9 H 1.48495 * 109.47217 * 204.99269 * 7 5 3 10 10 H 1.48494 * 109.47061 * 324.99571 * 7 5 3 11 11 C 1.46503 * 119.99957 * 179.72997 * 2 1 3 12 12 H 1.09001 * 110.63840 * 181.96110 * 11 2 1 13 13 C 1.55160 * 110.71922 * 58.81806 * 11 2 1 14 14 C 1.54909 * 101.57763 * 206.13265 * 13 11 2 15 15 N 1.47430 * 104.83283 * 37.01205 * 14 13 11 16 16 C 1.34780 * 125.64873 * 155.90090 * 15 14 13 17 17 O 1.21279 * 119.99452 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.99855 * 359.97438 * 16 15 14 19 19 C 1.53003 * 109.46994 * 179.97438 * 18 16 15 20 20 H 1.09000 * 110.32981 * 307.25207 * 19 18 16 21 21 C 1.54474 * 110.37439 * 185.00046 * 19 18 16 22 22 C 1.54505 * 104.06311 * 217.19095 * 21 19 18 23 23 C 1.54482 * 104.06422 * 0.02562 * 22 21 19 24 24 O 1.44418 * 104.80009 * 23.97642 * 23 22 21 25 25 C 1.47022 * 108.70318 * 335.86773 * 15 14 13 26 26 H 1.09000 * 109.47195 * 85.82386 * 1 2 3 27 27 H 1.08993 * 109.47146 * 205.82482 * 1 2 3 28 28 H 1.09001 * 109.46844 * 325.81885 * 1 2 3 29 29 H 0.97005 * 119.99354 * 179.97438 * 6 5 3 30 30 H 1.08995 * 111.00543 * 324.20973 * 13 11 2 31 31 H 1.08998 * 111.00486 * 88.06465 * 13 11 2 32 32 H 1.09004 * 110.36203 * 155.84529 * 14 13 11 33 33 H 1.08994 * 110.37235 * 278.17220 * 14 13 11 34 34 H 1.09000 * 109.47256 * 299.99199 * 18 16 15 35 35 H 1.09002 * 109.47515 * 60.00216 * 18 16 15 36 36 H 1.08997 * 110.51128 * 335.83406 * 21 19 18 37 37 H 1.09001 * 110.51584 * 98.40765 * 21 19 18 38 38 H 1.09005 * 110.51540 * 118.64223 * 22 21 19 39 39 H 1.09007 * 110.51504 * 241.35353 * 22 21 19 40 40 H 1.09001 * 110.37408 * 142.81131 * 23 22 21 41 41 H 1.08998 * 110.36945 * 265.03791 * 23 22 21 42 42 H 1.08998 * 109.88645 * 241.64245 * 25 15 14 43 43 H 1.08998 * 109.88161 * 120.47675 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1815 1.2137 0.3177 5 6 1.5176 2.3524 -0.4084 6 7 0.4099 2.2873 -1.1162 7 14 2.2390 4.0142 0.0467 8 1 3.2729 4.3945 -0.9492 9 1 1.1614 5.0359 0.0561 10 1 2.8564 3.9334 1.3948 11 6 2.1975 -1.2687 0.0060 12 1 3.2724 -1.0916 0.0401 13 6 1.8212 -2.1257 -1.2316 14 6 2.1039 -3.5585 -0.7151 15 7 1.6896 -3.5384 0.6996 16 6 1.3193 -4.6122 1.4251 17 8 0.9970 -4.4774 2.5865 18 6 1.3058 -5.9802 0.7931 19 6 0.8516 -7.0143 1.8252 20 1 1.4532 -6.9351 2.7307 21 6 0.9495 -8.4396 1.2375 22 6 -0.2828 -9.1699 1.8164 23 6 -0.9799 -8.0993 2.6849 24 8 -0.5490 -6.8370 2.1311 25 6 1.7482 -2.1530 1.1883 26 1 -0.3633 0.0748 -1.0249 27 1 -0.3633 -0.9250 0.4476 28 1 -0.3633 0.8502 0.5774 29 1 -0.0321 3.1024 -1.4013 30 1 0.7686 -2.0028 -1.4865 31 1 2.4584 -1.8843 -2.0823 32 1 1.5139 -4.2860 -1.2728 33 1 3.1662 -3.7884 -0.7961 34 1 0.6173 -5.9832 -0.0520 35 1 2.3084 -6.2300 0.4459 36 1 0.8985 -8.4082 0.1492 37 1 1.8705 -8.9241 1.5619 38 1 -0.9432 -9.4996 1.0143 39 1 0.0277 -10.0163 2.4290 40 1 -2.0630 -8.1964 2.6103 41 1 -0.6624 -8.1879 3.7238 42 1 2.4687 -2.0772 2.0026 43 1 0.7626 -1.8393 1.5323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971105759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:53 Heat of formation + Delta-G solvation = -53.632161 kcal Electronic energy + Delta-G solvation = -22739.208808 eV Core-core repulsion = 19399.215934 eV Total energy + Delta-G solvation = -3339.992875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07575 -39.09124 -37.27886 -34.75079 -32.56140 -31.94391 -31.36061 -29.72583 -28.14533 -26.48565 -26.00716 -23.58810 -22.34603 -22.12214 -21.12903 -19.27704 -18.93093 -17.09216 -16.97756 -16.33028 -16.11668 -15.82840 -15.49188 -14.74109 -14.61329 -13.99379 -13.85197 -13.44840 -13.28392 -12.82137 -12.66696 -12.37891 -12.23792 -12.06740 -11.94902 -11.65244 -11.41966 -11.35628 -11.29768 -10.99682 -10.87108 -10.73475 -10.55725 -10.45853 -10.24534 -9.87654 -9.83768 -9.81608 -9.50428 -8.54920 -8.24698 -6.83359 -5.76482 -3.18468 2.92306 3.25791 3.38078 3.45253 3.48033 3.76119 4.34547 4.44250 4.48917 4.68541 4.76037 4.89608 5.03933 5.07344 5.19031 5.25921 5.32638 5.36949 5.46054 5.48829 5.55673 5.57194 5.61778 5.65253 5.76179 5.82306 5.89919 5.92506 6.03783 6.34704 6.43308 6.59906 6.68469 6.77447 6.83479 6.90083 7.36026 7.68330 7.79063 7.87093 8.34070 8.47918 9.19014 9.83152 10.30976 11.29296 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042603 B = 0.003199 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.079512 B = 8750.034593 C = 8886.347065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.587 5.587 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.099 3.901 15 N -0.615 5.615 16 C 0.524 3.476 17 O -0.538 6.538 18 C -0.132 4.132 19 C 0.091 3.909 20 H 0.077 0.923 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.358 6.358 25 C 0.087 3.913 26 H 0.030 0.970 27 H 0.004 0.996 28 H 0.044 0.956 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -21.840 1.143 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.024 4.024 15 N -0.350 5.350 16 C 0.312 3.688 17 O -0.415 6.415 18 C -0.172 4.172 19 C 0.033 3.967 20 H 0.095 0.905 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.276 6.276 25 C -0.037 4.037 26 H 0.048 0.952 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.399 -21.442 1.720 21.556 hybrid contribution 0.399 0.730 0.050 0.833 sum 1.797 -20.712 1.770 20.865 Atomic orbital electron populations 1.20788 0.82432 0.95967 0.99366 1.43888 1.01887 0.99943 1.84976 1.19196 0.96826 0.84688 1.38286 0.91167 1.24923 0.98022 0.98325 0.98254 1.70112 1.20303 1.26938 1.37346 0.86300 0.78013 0.83895 0.78470 1.21374 1.21577 1.20586 1.21294 0.96231 0.85938 0.90287 0.90365 1.23387 1.02895 0.92648 1.00272 1.22360 0.99178 0.99410 0.81466 1.48540 1.66107 1.07794 1.12552 1.20110 0.77136 0.85284 0.86250 1.90706 1.48000 1.85856 1.16903 1.21739 1.03637 0.92215 0.99559 1.22717 0.84478 0.92502 0.97016 0.90550 1.23019 0.98805 0.95479 1.01713 1.22939 0.97331 0.98870 1.00153 1.23374 0.99978 0.83292 0.96817 1.89268 1.23349 1.32501 1.82507 1.22718 1.02292 0.79872 0.98836 0.95160 0.97790 0.93772 0.93687 0.90635 0.90406 0.91439 0.91690 0.88206 0.87834 0.90437 0.90388 0.90706 0.90660 0.89264 0.92383 0.92258 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 7.72 59.84 0.46 4.40 16 2 N -0.59 -14.47 2.94 -171.39 -0.50 -14.97 16 3 C -0.26 -7.06 9.62 -15.06 -0.14 -7.20 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.09 4.99 -17.43 -0.09 0.01 16 6 N -0.90 -26.10 10.82 55.49 0.60 -25.50 16 7 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.17 3.44 3.45 -66.09 -0.23 3.21 16 12 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 13 C -0.15 -2.54 6.65 -24.58 -0.16 -2.70 16 14 C 0.10 1.32 6.69 -2.53 -0.02 1.30 16 15 N -0.62 -10.06 3.33 -170.52 -0.57 -10.63 16 16 C 0.52 8.64 7.78 -10.99 -0.09 8.55 16 17 O -0.54 -11.06 15.94 -0.99 -0.02 -11.07 16 18 C -0.13 -1.51 4.33 -27.88 -0.12 -1.63 16 19 C 0.09 1.06 2.74 -25.96 -0.07 0.98 16 20 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 21 C -0.15 -1.20 6.63 -25.17 -0.17 -1.37 16 22 C -0.16 -1.16 7.09 -25.16 -0.18 -1.34 16 23 C 0.04 0.42 7.63 37.94 0.29 0.71 16 24 O -0.36 -5.09 10.92 -41.78 -0.46 -5.54 16 25 C 0.09 1.66 6.40 -3.06 -0.02 1.64 16 26 H 0.03 0.80 7.46 -51.93 -0.39 0.41 16 27 H 0.00 0.08 6.23 -51.93 -0.32 -0.24 16 28 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 1.40 7.29 -51.93 -0.38 1.02 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 0.74 7.48 -51.93 -0.39 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.06 7.85 -51.93 -0.41 0.65 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.56 6.08 -51.93 -0.32 1.25 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -32.94 339.27 -8.55 -41.48 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.16 Total: -2.13 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.53 Total: 6.57 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.47 Total: -51.10 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.47 Total: -16.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.94 -8.55 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971105759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.148 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds