Wall clock time and date at job start Tue Mar 31 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00186 * 2 1 4 4 H 1.08001 * 120.00356 * 160.03225 * 3 2 1 5 5 C 1.38813 * 119.99441 * 340.03844 * 3 2 1 6 6 N 1.31621 * 119.99574 * 157.82128 * 5 3 2 7 7 Si 1.86796 * 120.00156 * 337.81323 * 5 3 2 8 8 H 1.48508 * 109.47168 * 86.17420 * 7 5 3 9 9 H 1.48505 * 109.47300 * 206.17036 * 7 5 3 10 10 H 1.48498 * 109.47240 * 326.17560 * 7 5 3 11 11 C 1.46504 * 120.00054 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.63752 * 181.68507 * 11 2 1 13 13 C 1.55160 * 110.71862 * 58.55251 * 11 2 1 14 14 C 1.54907 * 101.58129 * 206.13118 * 13 11 2 15 15 N 1.47430 * 104.83196 * 37.00868 * 14 13 11 16 16 C 1.34774 * 125.64833 * 155.83424 * 15 14 13 17 17 O 1.21281 * 119.99826 * 184.97997 * 16 15 14 18 18 C 1.50697 * 120.00235 * 4.98139 * 16 15 14 19 19 H 1.09006 * 109.51986 * 27.84761 * 18 16 15 20 20 C 1.53175 * 109.52394 * 147.96824 * 18 16 15 21 21 C 1.53169 * 109.03980 * 176.88831 * 20 18 16 22 22 C 1.53100 * 109.16433 * 303.02250 * 21 20 18 23 23 O 1.42901 * 109.41456 * 57.60474 * 22 21 20 24 24 C 1.42917 * 114.15227 * 298.87847 * 23 22 21 25 25 C 1.47023 * 108.70162 * 335.87100 * 15 14 13 26 26 H 1.08998 * 109.46804 * 87.80307 * 1 2 3 27 27 H 1.08996 * 109.47378 * 327.79685 * 1 2 3 28 28 H 1.09009 * 109.46809 * 207.79569 * 1 2 3 29 29 H 0.97006 * 119.99427 * 179.97438 * 6 5 3 30 30 H 1.08995 * 111.00219 * 324.20515 * 13 11 2 31 31 H 1.08994 * 111.00540 * 88.05429 * 13 11 2 32 32 H 1.09003 * 110.36822 * 155.84278 * 14 13 11 33 33 H 1.08994 * 110.36666 * 278.16991 * 14 13 11 34 34 H 1.09008 * 109.54577 * 296.75557 * 20 18 16 35 35 H 1.09005 * 109.54186 * 57.01706 * 20 18 16 36 36 H 1.09005 * 109.52665 * 62.92280 * 21 20 18 37 37 H 1.08997 * 109.52701 * 183.11732 * 21 20 18 38 38 H 1.09000 * 109.48294 * 177.59206 * 22 21 20 39 39 H 1.08998 * 109.47594 * 297.62539 * 22 21 20 40 40 H 1.08998 * 109.42676 * 301.11180 * 24 23 22 41 41 H 1.09000 * 109.53681 * 181.07143 * 24 23 22 42 42 H 1.09003 * 109.88199 * 241.64053 * 25 15 14 43 43 H 1.09003 * 109.88236 * 120.47908 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1810 1.2141 0.3194 5 6 1.5181 2.3519 -0.4104 6 7 1.9782 3.5218 -0.0204 7 14 0.0155 2.2606 -1.5164 8 1 -1.2026 2.0923 -0.6837 9 1 -0.0943 3.5132 -2.3066 10 1 0.1488 1.1039 -2.4381 11 6 2.1975 -1.2688 0.0006 12 1 3.2726 -1.0916 0.0305 13 6 1.8163 -2.1233 -1.2371 14 6 2.1010 -3.5572 -0.7248 15 7 1.6926 -3.5398 0.6917 16 6 1.3240 -4.6149 1.4161 17 8 0.9200 -4.4720 2.5507 18 6 1.4139 -5.9945 0.8165 19 1 2.2024 -6.0139 0.0641 20 6 1.7315 -7.0113 1.9170 21 6 1.7434 -8.4175 1.3098 22 6 0.3929 -8.6877 0.6412 23 8 0.1453 -7.6886 -0.3500 24 6 0.0766 -6.3575 0.1657 25 6 1.7531 -2.1554 1.1829 26 1 -0.3633 0.0394 -1.0269 27 1 -0.3634 0.8695 0.5476 28 1 -0.3633 -0.9092 0.4793 29 1 1.5370 4.3366 -0.3075 30 1 0.7627 -1.9999 -1.4875 31 1 2.4499 -1.8801 -2.0900 32 1 1.5088 -4.2835 -1.2814 33 1 3.1631 -3.7867 -0.8105 34 1 2.7092 -6.7911 2.3460 35 1 0.9699 -6.9565 2.6950 36 1 2.5380 -8.4867 0.5667 37 1 1.9140 -9.1525 2.0963 38 1 0.4106 -9.6706 0.1703 39 1 -0.3966 -8.6583 1.3921 40 1 -0.7178 -6.2975 0.9096 41 1 -0.1328 -5.6621 -0.6471 42 1 2.4770 -2.0813 1.9944 43 1 0.7689 -1.8423 1.5316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971178045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:30 Heat of formation + Delta-G solvation = -52.314969 kcal Electronic energy + Delta-G solvation = -23198.591976 eV Core-core repulsion = 19858.656219 eV Total energy + Delta-G solvation = -3339.935757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53183 -39.01778 -37.57039 -35.09084 -33.85129 -32.09127 -31.46403 -30.18468 -28.37304 -26.38067 -25.38674 -24.90021 -23.33101 -22.48229 -20.82915 -19.42923 -19.08513 -17.24882 -17.05022 -16.58196 -16.47374 -16.03027 -15.35521 -15.17233 -14.76001 -14.37086 -14.12371 -13.75285 -13.29431 -13.19872 -13.16286 -12.90168 -12.76271 -12.39967 -12.02997 -11.84703 -11.79042 -11.77972 -11.37097 -11.24438 -11.09166 -10.91051 -10.68910 -10.27505 -10.22280 -10.05191 -9.97059 -9.60297 -9.45692 -8.73248 -8.48215 -7.16761 -5.99989 -3.34364 2.60006 3.00127 3.31793 3.45108 3.48104 3.57245 4.32620 4.44983 4.49233 4.56694 4.62689 4.72967 4.75934 4.93541 4.96877 5.09253 5.14456 5.30110 5.34364 5.39304 5.41489 5.45769 5.53613 5.58009 5.65122 5.67027 5.78852 5.80919 5.99741 6.03947 6.19595 6.22187 6.33104 6.39409 6.53932 6.62357 6.71669 6.82627 7.61779 7.81988 8.20433 8.24380 8.84695 9.65603 9.94453 11.15543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.003785 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.247877 B = 7396.343847 C = 7642.481591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.596 5.596 3 C -0.269 4.269 4 H 0.090 0.910 5 C 0.024 3.976 6 N -0.905 5.905 7 Si 0.894 3.106 8 H -0.288 1.288 9 H -0.307 1.307 10 H -0.278 1.278 11 C 0.175 3.825 12 H 0.089 0.911 13 C -0.155 4.155 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.531 3.469 17 O -0.542 6.542 18 C -0.138 4.138 19 H 0.098 0.902 20 C -0.106 4.106 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.377 6.377 24 C 0.075 3.925 25 C 0.086 3.914 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -23.098 -1.151 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.317 5.317 3 C -0.397 4.397 4 H 0.108 0.892 5 C -0.175 4.175 6 N -0.548 5.548 7 Si 0.726 3.274 8 H -0.216 1.216 9 H -0.235 1.235 10 H -0.204 1.204 11 C 0.066 3.934 12 H 0.107 0.893 13 C -0.196 4.196 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.318 3.682 17 O -0.420 6.420 18 C -0.160 4.160 19 H 0.116 0.884 20 C -0.144 4.144 21 C -0.192 4.192 22 C -0.020 4.020 23 O -0.295 6.295 24 C -0.002 4.002 25 C -0.038 4.038 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.211 -22.886 -0.684 22.928 hybrid contribution -0.728 0.205 -0.459 0.885 sum -1.939 -22.681 -1.143 22.792 Atomic orbital electron populations 1.21471 0.84661 1.00603 0.98403 1.44113 1.00596 1.01586 1.85406 1.18938 0.98257 0.83140 1.39335 0.89188 1.25084 0.98078 0.94936 0.99372 1.69860 1.42561 0.97308 1.45064 0.86969 0.83253 0.75423 0.81762 1.21552 1.23505 1.20396 1.21341 0.96837 0.85033 0.90234 0.89273 1.23420 1.02769 0.92958 1.00417 1.22398 0.99821 0.99124 0.81162 1.48565 1.65795 1.07747 1.12497 1.20028 0.77423 0.85125 0.85578 1.90695 1.46305 1.86221 1.18752 1.21943 1.01255 0.92849 0.99949 0.88356 1.21465 1.03292 0.92740 0.96921 1.22206 0.98794 0.97290 1.00934 1.22642 0.95776 0.91865 0.91724 1.87958 1.92375 1.15120 1.34095 1.22436 0.94318 0.84273 0.99181 1.22697 1.02508 0.79733 0.98861 0.96789 0.92176 0.94125 0.92657 0.90839 0.89865 0.91075 0.91246 0.91052 0.90356 0.90882 0.90416 0.88699 0.92942 0.92225 0.88318 0.91613 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 7.08 59.85 0.42 2.44 16 2 N -0.60 -13.55 2.79 -171.38 -0.48 -14.03 16 3 C -0.27 -7.28 10.05 -15.06 -0.15 -7.43 16 4 H 0.09 2.57 8.01 -52.49 -0.42 2.15 16 5 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 6 N -0.91 -27.40 13.97 55.49 0.78 -26.62 16 7 Si 0.89 22.27 23.90 -169.99 -4.06 18.21 16 8 H -0.29 -6.95 6.43 56.52 0.36 -6.59 16 9 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 10 H -0.28 -6.74 6.56 56.52 0.37 -6.37 16 11 C 0.18 3.18 3.45 -66.09 -0.23 2.95 16 12 H 0.09 1.61 7.91 -51.93 -0.41 1.20 16 13 C -0.16 -2.31 6.65 -24.58 -0.16 -2.47 16 14 C 0.10 1.17 6.20 -2.53 -0.02 1.16 16 15 N -0.61 -8.95 3.33 -170.52 -0.57 -9.52 16 16 C 0.53 7.81 6.88 -10.99 -0.08 7.74 16 17 O -0.54 -9.98 16.49 5.56 0.09 -9.89 16 18 C -0.14 -1.52 2.09 -91.64 -0.19 -1.71 16 19 H 0.10 0.96 7.27 -51.93 -0.38 0.59 16 20 C -0.11 -1.06 4.99 -26.55 -0.13 -1.20 16 21 C -0.15 -1.17 6.14 -26.59 -0.16 -1.33 16 22 C 0.06 0.45 6.85 37.21 0.25 0.71 16 23 O -0.38 -3.96 10.76 -35.23 -0.38 -4.34 16 24 C 0.08 0.79 6.11 37.20 0.23 1.02 16 25 C 0.09 1.48 6.41 -3.07 -0.02 1.46 16 26 H 0.01 0.31 5.04 -51.93 -0.26 0.05 16 27 H 0.06 1.40 5.92 -51.93 -0.31 1.10 16 28 H 0.04 0.77 6.21 -51.92 -0.32 0.45 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.17 7.27 -51.93 -0.38 0.79 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.71 7.10 -51.93 -0.37 0.34 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.08 0.88 7.76 -51.93 -0.40 0.47 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.98 7.52 -51.93 -0.39 0.59 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.40 6.06 -51.93 -0.31 1.08 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -32.02 327.15 -6.98 -39.00 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.96 Total: -1.68 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.33 Total: 3.93 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.27 Total: -50.17 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.29 Total: -14.22 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.06 Total: 18.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.02 -6.98 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971178045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.316 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds