Wall clock time and date at job start Tue Mar 31 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 110.56574 * 2 1 4 4 C 1.54513 * 110.51068 * 237.32351 * 2 1 3 5 5 C 1.54486 * 104.05897 * 241.35453 * 4 2 1 6 6 O 1.44418 * 104.80390 * 23.97740 * 5 4 2 7 7 C 1.44418 * 105.27697 * 319.48647 * 6 5 4 8 8 H 1.09001 * 110.47029 * 281.62914 * 7 6 5 9 9 C 1.50701 * 110.37301 * 159.34320 * 7 6 5 10 10 O 1.21283 * 120.00038 * 359.61875 * 9 7 6 11 11 N 1.34782 * 120.00370 * 179.62305 * 9 7 6 12 12 C 1.47428 * 125.64381 * 359.97079 * 11 9 7 13 13 C 1.54914 * 104.82991 * 204.15407 * 12 11 9 14 14 C 1.55158 * 101.58073 * 322.99293 * 13 12 11 15 15 H 1.09004 * 110.72031 * 276.96148 * 14 13 12 16 16 N 1.46493 * 110.71930 * 153.86750 * 14 13 12 17 17 C 1.46502 * 120.00057 * 301.45126 * 16 14 13 18 18 C 1.36945 * 119.99938 * 121.45310 * 16 14 13 19 19 H 1.08000 * 120.00064 * 23.52833 * 18 16 14 20 20 C 1.38810 * 119.99658 * 203.52648 * 18 16 14 21 21 N 1.31615 * 120.00396 * 15.33408 * 20 18 16 22 22 Si 1.86808 * 119.99590 * 195.33399 * 20 18 16 23 23 H 1.48499 * 109.47065 * 60.00040 * 22 20 18 24 24 H 1.48505 * 109.46891 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47240 * 299.99986 * 22 20 18 26 26 C 1.47016 * 125.64969 * 180.02562 * 11 9 7 27 27 H 1.09001 * 109.47486 * 297.32060 * 1 2 3 28 28 H 1.09004 * 109.47375 * 57.32181 * 1 2 3 29 29 H 1.09002 * 109.47159 * 177.31830 * 1 2 3 30 30 H 1.08991 * 110.51315 * 359.97438 * 4 2 1 31 31 H 1.09001 * 110.51302 * 122.71234 * 4 2 1 32 32 H 1.09002 * 110.37087 * 142.81042 * 5 4 2 33 33 H 1.09003 * 110.37032 * 265.03186 * 5 4 2 34 34 H 1.08997 * 110.36107 * 85.31429 * 12 11 9 35 35 H 1.08998 * 110.36823 * 322.98838 * 12 11 9 36 36 H 1.08992 * 111.00242 * 204.92086 * 13 12 11 37 37 H 1.08993 * 111.00353 * 81.06261 * 13 12 11 38 38 H 1.08993 * 109.47090 * 95.22322 * 17 16 14 39 39 H 1.09005 * 109.46886 * 215.22071 * 17 16 14 40 40 H 1.08992 * 109.47056 * 335.22201 * 17 16 14 41 41 H 0.96998 * 120.00115 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.88712 * 59.49817 * 26 11 9 43 43 H 1.08996 * 109.88258 * 298.33184 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7813 -1.2181 5 6 2.8756 -1.9422 -0.5921 6 8 2.3069 -2.1177 0.7238 7 6 2.0713 -0.7813 1.2178 8 1 3.0013 -0.3361 1.5714 9 6 1.0479 -0.8036 2.3238 10 8 0.5489 -1.8544 2.6671 11 7 0.6870 0.3441 2.9314 12 6 1.2116 1.6852 2.6156 13 6 1.0005 2.5086 3.9107 14 6 -0.3601 1.9567 4.4124 15 1 -1.1880 2.4553 3.9082 16 7 -0.4756 2.1050 5.8652 17 6 0.5136 1.4793 6.7463 18 6 -1.5082 2.8283 6.3997 19 1 -2.4195 2.9658 5.8366 20 6 -1.3836 3.3849 7.6652 21 7 -0.1974 3.4843 8.2266 22 14 -2.8998 3.9930 8.5715 23 1 -3.8452 2.8647 8.7672 24 1 -2.5005 4.5387 9.8936 25 1 -3.5589 5.0584 7.7743 26 6 -0.2942 0.4658 4.0194 27 1 -0.3634 0.4717 0.9130 28 1 -0.3634 0.5549 -0.8650 29 1 -0.3633 -1.0266 -0.0481 30 1 1.2490 -1.1679 -1.8201 31 1 2.7219 -0.1471 -1.8203 32 1 2.7534 -2.8503 -1.1825 33 1 3.9304 -1.6770 -0.5192 34 1 0.6529 2.1263 1.7902 35 1 2.2722 1.6295 2.3702 36 1 0.9325 3.5737 3.6897 37 1 1.7925 2.3107 4.6329 38 1 1.2863 2.2055 6.9985 39 1 0.0237 1.1385 7.6585 40 1 0.9667 0.6285 6.2376 41 1 -0.1104 3.8729 9.1111 42 1 0.0251 -0.1294 4.8749 43 1 -1.2724 0.1296 3.6758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972360230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:36 Heat of formation + Delta-G solvation = -45.975653 kcal Electronic energy + Delta-G solvation = -23485.341990 eV Core-core repulsion = 20145.681126 eV Total energy + Delta-G solvation = -3339.660864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68278 -38.84230 -37.17120 -34.89777 -33.65219 -31.67718 -30.32453 -29.68817 -28.03925 -26.85884 -26.04997 -24.01512 -22.69946 -22.35976 -20.98997 -19.32707 -18.97739 -17.25350 -17.01082 -16.66968 -16.15585 -15.71532 -15.23860 -14.59572 -14.46590 -14.00456 -13.67255 -13.41405 -13.33420 -13.17123 -12.74272 -12.55314 -12.40076 -12.31293 -11.78959 -11.64947 -11.45343 -11.29441 -11.10994 -11.00928 -11.00477 -10.78051 -10.59805 -10.49763 -10.27809 -10.05039 -9.89996 -9.88221 -9.44986 -8.59398 -8.33490 -6.82555 -5.78304 -3.25668 2.76423 2.91618 3.36807 3.42879 3.44226 3.87993 4.20636 4.40574 4.45898 4.52762 4.78343 4.89074 5.00302 5.02563 5.17333 5.23008 5.32499 5.35370 5.42140 5.47321 5.52353 5.54507 5.66794 5.70989 5.76038 5.84137 5.88146 5.98490 6.12532 6.29056 6.37841 6.45089 6.57902 6.68132 6.78937 6.85911 7.30696 7.66570 7.74488 7.76141 8.32542 8.37659 9.16394 9.79379 10.28449 11.26280 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.003746 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.923290 B = 7473.764618 C = 7565.673300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.344 6.344 7 C 0.063 3.937 8 H 0.092 0.908 9 C 0.536 3.464 10 O -0.527 6.527 11 N -0.610 5.610 12 C 0.096 3.904 13 C -0.151 4.151 14 C 0.174 3.826 15 H 0.079 0.921 16 N -0.585 5.585 17 C 0.157 3.843 18 C -0.264 4.264 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.088 3.912 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.004 0.996 41 H 0.254 0.746 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -3.787 -18.317 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.132 4.132 3 H 0.110 0.890 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.262 6.262 7 C 0.002 3.998 8 H 0.109 0.891 9 C 0.323 3.677 10 O -0.403 6.403 11 N -0.346 5.346 12 C -0.027 4.027 13 C -0.192 4.192 14 C 0.063 3.937 15 H 0.097 0.903 16 N -0.305 5.305 17 C 0.013 3.987 18 C -0.393 4.393 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.036 4.036 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.364 -4.573 -17.827 19.474 hybrid contribution -0.527 0.631 0.436 0.931 sum 5.838 -3.942 -17.391 18.763 Atomic orbital electron populations 1.22036 0.93472 1.02928 1.02964 1.22470 0.97753 0.99817 0.93124 0.88958 1.23058 1.00622 0.97332 0.97795 1.23476 0.96818 0.99192 0.84125 1.89275 1.82825 1.23550 1.30549 1.22909 0.97708 0.85209 0.94007 0.89086 1.19605 0.82816 0.82877 0.82438 1.90717 1.55080 1.29990 1.64505 1.48433 1.42881 1.06335 1.36977 1.22459 0.98328 0.82802 0.99086 1.23398 1.01400 0.99340 0.95015 1.21303 0.95150 0.90556 0.86683 0.90266 1.43851 1.30030 1.58461 0.98192 1.20803 0.92394 0.93179 0.92338 1.19158 0.92714 1.27082 1.00346 0.91300 1.25007 0.96418 0.98640 0.99154 1.70061 1.20831 1.47503 1.16237 0.86333 0.82530 0.78599 0.79051 1.20985 1.21633 1.20857 1.22762 0.90917 1.00996 0.88908 0.91045 0.91994 0.91967 0.90197 0.90194 0.88762 0.92060 0.91391 0.91534 0.90305 0.90575 0.94771 0.94175 0.97762 0.93601 0.90829 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.03 37.15 0.30 -1.41 16 2 C -0.11 -1.09 2.80 -89.05 -0.25 -1.34 16 3 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 4 C -0.15 -1.18 6.74 -25.16 -0.17 -1.34 16 5 C 0.04 0.37 7.63 37.94 0.29 0.66 16 6 O -0.34 -4.93 10.91 -54.45 -0.59 -5.52 16 7 C 0.06 0.81 2.91 -27.11 -0.08 0.73 16 8 H 0.09 1.01 7.75 -51.93 -0.40 0.60 16 9 C 0.54 8.96 5.59 -10.98 -0.06 8.90 16 10 O -0.53 -11.19 16.88 -13.66 -0.23 -11.42 16 11 N -0.61 -9.59 2.38 -170.52 -0.41 -10.00 16 12 C 0.10 1.22 5.27 -2.52 -0.01 1.21 16 13 C -0.15 -2.43 6.65 -24.58 -0.16 -2.59 16 14 C 0.17 3.33 3.45 -66.10 -0.23 3.10 16 15 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 16 N -0.58 -14.07 2.93 -171.39 -0.50 -14.58 16 17 C 0.16 3.79 7.69 59.85 0.46 4.25 16 18 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 19 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 20 C 0.01 0.19 5.05 -17.43 -0.09 0.10 16 21 N -0.90 -25.68 10.88 55.49 0.60 -25.07 16 22 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.09 1.62 6.39 -3.07 -0.02 1.60 16 27 H 0.07 0.89 5.10 -51.93 -0.26 0.62 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.73 7.43 -51.93 -0.39 0.35 16 35 H 0.07 0.70 7.41 -51.93 -0.38 0.31 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.35 7.28 -51.93 -0.38 0.98 16 38 H 0.03 0.88 7.32 -51.93 -0.38 0.50 16 39 H 0.04 1.05 7.44 -51.93 -0.39 0.66 16 40 H 0.00 0.09 6.26 -51.93 -0.33 -0.24 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 1.52 6.11 -51.93 -0.32 1.21 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.17 331.45 -8.28 -40.45 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.95 Total: -1.96 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.17 Total: 6.72 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.30 Total: -49.65 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.82 Total: -16.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.17 -8.28 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972360230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.522 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds