Wall clock time and date at job start Tue Mar 31 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87113 * 2 1 4 4 O 1.43744 * 109.87818 * 238.83801 * 2 1 3 5 5 C 1.44387 * 106.97139 * 214.06544 * 4 2 1 6 6 C 1.54995 * 103.49228 * 40.05934 * 5 4 2 7 7 C 1.54101 * 109.87640 * 121.00688 * 2 1 3 8 8 H 1.08998 * 110.48694 * 2.64119 * 7 2 1 9 9 C 1.50699 * 110.48764 * 240.13071 * 7 2 1 10 10 O 1.21284 * 120.00104 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00368 * 180.02562 * 9 7 2 12 12 C 1.48210 * 119.97438 * 179.97438 * 11 9 7 13 13 C 1.47139 * 110.34370 * 102.46049 * 12 11 9 14 14 C 1.53798 * 111.83856 * 58.29787 * 13 12 11 15 15 N 1.43463 * 107.96200 * 281.66810 * 14 13 12 16 16 C 1.36930 * 118.94379 * 273.62706 * 15 14 13 17 17 H 1.07999 * 120.00089 * 139.36808 * 16 15 14 18 18 C 1.38814 * 120.00040 * 319.37733 * 16 15 14 19 19 N 1.31624 * 120.00104 * 156.09591 * 18 16 15 20 20 Si 1.86801 * 119.99776 * 336.09246 * 18 16 15 21 21 H 1.48502 * 109.46961 * 95.55444 * 20 18 16 22 22 H 1.48504 * 109.47015 * 215.55055 * 20 18 16 23 23 H 1.48498 * 109.47255 * 335.55422 * 20 18 16 24 24 C 1.48860 * 122.11473 * 93.65550 * 15 14 13 25 25 C 1.43619 * 119.96643 * 359.72150 * 11 9 7 26 26 H 1.08995 * 109.46816 * 298.99640 * 1 2 3 27 27 H 1.09000 * 109.46516 * 58.99470 * 1 2 3 28 28 H 1.08989 * 109.47142 * 178.99282 * 1 2 3 29 29 H 1.09006 * 110.61760 * 281.55650 * 5 4 2 30 30 H 1.09002 * 110.61644 * 158.56643 * 5 4 2 31 31 H 1.08999 * 110.90373 * 204.77644 * 6 5 4 32 32 H 1.09000 * 110.93369 * 81.19037 * 6 5 4 33 33 H 1.09002 * 109.32775 * 222.73345 * 12 11 9 34 34 H 1.09002 * 109.32629 * 342.37137 * 12 11 9 35 35 H 1.09005 * 109.00605 * 178.90186 * 13 12 11 36 36 H 1.08993 * 109.00869 * 297.76729 * 13 12 11 37 37 H 1.08997 * 109.76415 * 41.29097 * 14 13 12 38 38 H 1.09001 * 109.76098 * 162.00304 * 14 13 12 39 39 H 0.96996 * 119.99941 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.48473 * 80.58417 * 24 15 14 41 41 H 1.09004 * 109.47529 * 200.61214 * 24 15 14 42 42 H 1.08994 * 108.87639 * 31.47286 * 25 11 9 43 43 H 1.09004 * 108.87307 * 149.91273 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 3.2380 -1.3652 -0.7628 6 6 2.9195 -1.8906 0.6603 7 6 2.0540 -0.7465 1.2421 8 1 1.2245 -1.1503 1.8226 9 6 2.8945 0.1703 2.0930 10 8 3.0707 1.3211 1.7530 11 7 3.4512 -0.2888 3.2314 12 6 4.2781 0.6133 4.0674 13 6 3.5115 1.0737 5.2359 14 6 3.0195 -0.1021 6.0967 15 7 1.8713 -0.6720 5.4525 16 6 0.6357 -0.1404 5.7087 17 1 -0.0769 -0.0192 4.9063 18 6 0.2991 0.2429 6.9997 19 7 -0.6354 1.1490 7.1947 20 14 1.1724 -0.5275 8.4603 21 1 2.2938 0.3485 8.8849 22 1 0.2139 -0.6842 9.5838 23 1 1.7036 -1.8591 8.0734 24 6 1.9800 -1.8232 4.5150 25 6 3.2380 -1.6502 3.6359 26 1 -0.3633 0.4982 0.8988 27 1 -0.3632 0.5294 -0.8809 28 1 -0.3633 -1.0274 -0.0181 29 1 4.0686 -0.6599 -0.7346 30 1 3.4585 -2.1928 -1.4371 31 1 3.8331 -2.0208 1.2402 32 1 2.3541 -2.8214 0.6143 33 1 5.1656 0.0787 4.4061 34 1 4.5814 1.4768 3.4753 35 1 4.1452 1.7186 5.8447 36 1 2.6496 1.6455 4.8921 37 1 3.8058 -0.8523 6.1800 38 1 2.7461 0.2568 7.0890 39 1 -0.8709 1.4166 8.0968 40 1 2.0569 -2.7496 5.0841 41 1 1.0950 -1.8592 3.8796 42 1 3.1290 -2.2696 2.7458 43 1 4.1082 -1.9918 4.1965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982794884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:45 Heat of formation + Delta-G solvation = -66.158517 kcal Electronic energy + Delta-G solvation = -24394.518660 eV Core-core repulsion = 21053.982602 eV Total energy + Delta-G solvation = -3340.536058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92310 -39.93720 -38.56799 -36.14579 -34.56743 -33.58186 -33.03333 -32.31735 -29.49557 -27.84918 -26.91345 -25.51947 -24.14107 -23.26301 -21.89701 -21.79852 -20.08609 -18.65824 -18.13810 -17.72470 -17.13857 -17.05988 -16.66132 -16.39058 -15.85055 -15.55446 -15.24341 -14.99893 -14.76146 -14.32342 -14.24806 -13.93758 -13.83132 -13.54678 -13.39061 -13.30112 -12.84613 -12.79062 -12.59595 -12.39135 -12.20886 -12.14050 -11.88481 -11.86511 -11.78762 -11.60321 -11.49254 -10.84432 -10.60488 -10.54395 -9.62848 -8.64173 -8.20527 -5.58897 1.31645 1.41319 1.52929 1.55837 2.07974 2.42578 2.83656 3.05217 3.38313 3.43950 3.55115 3.71375 3.98581 4.06431 4.10530 4.20611 4.23549 4.35048 4.36303 4.38968 4.49641 4.59011 4.65035 4.67968 4.68706 4.81945 4.83659 4.91589 4.94985 5.01307 5.05033 5.07047 5.10753 5.16392 5.19597 5.44179 5.70520 5.88068 5.97583 6.16480 6.49165 7.07332 7.17210 7.69174 8.04399 8.99779 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.005764 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.439428 B = 4856.951314 C = 5194.901071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.060 0.940 4 O -0.387 6.387 5 C 0.042 3.958 6 C -0.137 4.137 7 C -0.139 4.139 8 H 0.113 0.887 9 C 0.519 3.481 10 O -0.590 6.590 11 N -0.584 5.584 12 C 0.129 3.871 13 C -0.155 4.155 14 C 0.147 3.853 15 N -0.612 5.612 16 C -0.256 4.256 17 H 0.024 0.976 18 C -0.022 4.022 19 N -0.951 5.951 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.312 1.312 23 H -0.250 1.250 24 C 0.117 3.883 25 C 0.083 3.917 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.020 0.980 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.115 0.885 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 -11.130 -10.974 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 H 0.078 0.922 4 O -0.307 6.307 5 C -0.034 4.034 6 C -0.174 4.174 7 C -0.160 4.160 8 H 0.131 0.869 9 C 0.308 3.692 10 O -0.471 6.471 11 N -0.313 5.313 12 C 0.008 3.992 13 C -0.196 4.196 14 C 0.021 3.979 15 N -0.336 5.336 16 C -0.387 4.387 17 H 0.042 0.958 18 C -0.218 4.218 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.241 1.241 23 H -0.174 1.174 24 C -0.007 4.007 25 C -0.041 4.041 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.375 -10.502 -11.250 19.748 hybrid contribution -0.528 0.719 1.409 1.668 sum 11.847 -9.783 -9.841 18.246 Atomic orbital electron populations 1.21869 0.92721 1.03465 1.02249 1.22614 0.95724 0.95811 0.83484 0.92172 1.88837 1.40623 1.67941 1.33274 1.23769 0.86805 0.96852 0.96021 1.23325 1.00640 0.97452 0.95997 1.22710 0.99580 0.96910 0.96842 0.86913 1.20774 0.78947 0.87715 0.81767 1.90612 1.62443 1.20704 1.73379 1.47467 1.49546 1.13074 1.21256 1.20647 0.93163 0.94524 0.90891 1.21596 0.99359 1.00233 0.98377 1.20766 0.89324 0.94012 0.93815 1.43966 1.02131 1.34808 1.52701 1.18529 0.92832 1.35696 0.91621 0.95813 1.26194 0.97452 0.97546 1.00638 1.70062 1.36604 1.30897 1.21960 0.85751 0.77026 0.80623 0.78801 1.20397 1.24080 1.17391 1.22350 0.97343 0.89433 0.91595 1.22122 0.99216 0.81896 1.00899 0.92527 0.91271 0.90443 0.93104 0.85669 0.87709 0.86522 0.87495 0.91367 0.90599 0.96086 0.90350 0.95642 0.93020 0.92594 0.93450 0.86728 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.36 71.98 0.67 -3.30 16 2 C 0.08 2.42 3.67 30.97 0.11 2.53 16 3 H 0.06 2.17 6.43 -2.39 -0.02 2.16 16 4 O -0.39 -10.44 11.19 -148.98 -1.67 -12.10 16 5 C 0.04 0.80 7.72 72.66 0.56 1.36 16 6 C -0.14 -2.36 5.20 31.89 0.17 -2.19 16 7 C -0.14 -3.73 2.23 -10.55 -0.02 -3.76 16 8 H 0.11 3.10 6.77 -2.39 -0.02 3.09 16 9 C 0.52 17.54 6.98 87.66 0.61 18.15 16 10 O -0.59 -24.95 14.69 -3.04 -0.04 -24.99 16 11 N -0.58 -17.36 2.45 -832.09 -2.04 -19.40 16 12 C 0.13 3.85 5.70 84.23 0.48 4.33 16 13 C -0.15 -5.74 5.64 29.04 0.16 -5.57 16 14 C 0.15 5.70 4.58 87.21 0.40 6.10 16 15 N -0.61 -26.49 2.06 -698.91 -1.44 -27.93 16 16 C -0.26 -14.26 9.50 84.04 0.80 -13.47 16 17 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 18 C -0.02 -1.27 5.24 84.86 0.44 -0.82 16 19 N -0.95 -60.08 13.97 21.65 0.30 -59.77 16 20 Si 0.95 45.05 25.29 68.60 1.74 46.79 16 21 H -0.28 -12.58 6.70 99.48 0.67 -11.91 16 22 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 23 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 24 C 0.12 3.78 6.82 86.41 0.59 4.37 16 25 C 0.08 1.91 4.68 87.40 0.41 2.32 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.48 6.25 -2.39 -0.01 1.46 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 2.28 8.06 -2.39 -0.02 2.26 16 34 H 0.07 2.22 7.12 -2.39 -0.02 2.20 16 35 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.02 0.99 7.90 -2.39 -0.02 0.98 16 37 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 38 H 0.03 1.13 3.52 -2.39 -0.01 1.12 16 39 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.61 7.14 -2.39 -0.02 1.60 16 42 H 0.12 1.89 4.22 -2.39 -0.01 1.88 16 43 H 0.10 1.79 7.73 -2.38 -0.02 1.78 16 Total: -1.00 -76.53 322.13 3.19 -73.33 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.96 Total: 14.01 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.39 Total: 10.06 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.18 Total: -107.10 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.71 Total: -37.09 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.74 Total: 46.79 kcal Total: -76.53 3.19 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982794884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds