Wall clock time and date at job start Tue Mar 31 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00218 * 2 1 4 4 C 1.50693 * 109.47532 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99911 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00237 * 180.02562 * 4 3 2 7 7 C 1.48238 * 125.77932 * 359.97138 * 6 4 3 8 8 C 1.52326 * 105.86431 * 176.83667 * 7 6 4 9 9 H 1.09001 * 110.25049 * 272.18053 * 8 7 6 10 10 C 1.51445 * 117.45497 * 145.31491 * 8 7 6 11 11 C 1.53838 * 107.04567 * 181.23600 * 10 8 7 12 12 C 1.52526 * 111.60388 * 57.23415 * 11 10 8 13 13 C 1.53801 * 111.70998 * 305.84446 * 12 11 10 14 14 H 1.09010 * 110.07148 * 298.22792 * 13 12 11 15 15 N 1.46504 * 109.94213 * 176.99456 * 13 12 11 16 16 C 1.36937 * 120.00444 * 87.49007 * 15 13 12 17 17 H 1.07998 * 119.99713 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00008 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00162 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99918 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46869 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47274 * 119.99797 * 20 18 16 23 23 H 1.48496 * 109.47138 * 239.99881 * 20 18 16 24 24 C 1.51608 * 106.96523 * 57.64579 * 13 12 11 25 25 H 1.09001 * 111.26141 * 55.59958 * 24 13 12 26 26 C 1.48656 * 125.78556 * 179.97438 * 6 4 3 27 27 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46785 * 299.99824 * 1 2 3 29 29 H 1.08995 * 109.47086 * 60.00148 * 1 2 3 30 30 H 1.09003 * 109.46940 * 59.99925 * 3 2 1 31 31 H 1.09007 * 109.47067 * 300.00317 * 3 2 1 32 32 H 1.08998 * 110.17156 * 57.74241 * 7 6 4 33 33 H 1.08996 * 110.17858 * 295.93554 * 7 6 4 34 34 H 1.08999 * 109.93995 * 61.85075 * 10 8 7 35 35 H 1.09000 * 109.93690 * 300.62040 * 10 8 7 36 36 H 1.09002 * 109.04191 * 177.75937 * 11 10 8 37 37 H 1.09003 * 109.04257 * 296.70707 * 11 10 8 38 38 H 1.08994 * 109.03709 * 66.49364 * 12 11 10 39 39 H 1.09001 * 109.03093 * 185.34745 * 12 11 10 40 40 H 0.97003 * 119.99576 * 267.49197 * 15 13 12 41 41 H 0.96995 * 120.00178 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.62436 * 37.11383 * 26 6 4 43 43 H 1.09004 * 110.62829 * 274.09224 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2969 -0.0002 7 6 3.7770 3.6926 0.0002 8 6 5.0141 4.5776 0.0814 9 1 5.2900 4.7458 1.1225 10 6 4.9788 5.8969 -0.6613 11 6 6.3438 6.5727 -0.4452 12 6 7.4910 5.6848 -0.9164 13 6 7.4367 4.2922 -0.2659 14 1 7.5354 4.3807 0.8161 15 7 8.5109 3.4500 -0.7980 16 6 9.7497 3.4702 -0.2147 17 1 9.9347 4.1067 0.6379 18 6 10.7675 2.6725 -0.7193 19 7 10.5418 1.8964 -1.7580 20 14 12.4571 2.6996 0.0768 21 1 12.4507 3.6479 1.2195 22 1 12.7965 1.3386 0.5643 23 1 13.4675 3.1342 -0.9209 24 6 6.0885 3.6931 -0.6150 25 1 5.9317 3.6742 -1.6935 26 6 5.7627 2.3295 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.1362 3.8622 0.8655 33 1 3.2291 3.8961 -0.9197 34 1 4.1845 6.5273 -0.2617 35 1 4.8155 5.7207 -1.7245 36 1 6.3684 7.5102 -1.0007 37 1 6.4714 6.7852 0.6163 38 1 7.4337 5.5749 -1.9993 39 1 8.4374 6.1600 -0.6582 40 1 8.3445 2.8780 -1.5636 41 1 11.2529 1.3387 -2.1104 42 1 6.1644 1.5249 -0.6161 43 1 6.1482 2.2648 1.0173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992565852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:15 Heat of formation + Delta-G solvation = -69.324177 kcal Electronic energy + Delta-G solvation = -22955.935815 eV Core-core repulsion = 19615.262483 eV Total energy + Delta-G solvation = -3340.673332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42591 -38.89549 -37.37578 -35.50468 -33.98417 -31.57028 -30.91554 -29.27445 -28.46234 -26.80094 -26.08840 -24.34777 -23.17423 -20.95194 -20.41356 -19.78012 -19.35814 -17.36407 -17.02093 -16.62775 -16.39444 -15.56461 -15.18205 -14.88316 -14.37367 -14.25559 -14.11934 -13.90872 -13.42769 -13.07321 -12.83128 -12.71293 -12.46066 -12.20437 -12.06977 -11.93538 -11.62898 -11.46047 -10.99120 -10.89898 -10.79718 -10.55213 -10.26909 -10.17701 -10.13746 -10.01985 -9.80936 -9.66220 -9.46622 -8.88698 -8.54475 -6.95652 -5.75063 -3.04434 2.68167 2.69476 3.44746 3.50071 3.52683 3.79068 4.35777 4.53481 4.58206 4.76328 4.84176 4.93085 4.97158 5.06571 5.10916 5.20957 5.33901 5.36110 5.39909 5.49201 5.56941 5.57812 5.70326 5.81534 5.84256 5.90706 6.04167 6.08127 6.14377 6.25151 6.28141 6.40544 6.52424 6.59471 6.61924 6.79491 6.85046 7.07656 7.58409 7.71635 8.26334 8.42696 9.54316 10.10770 10.45204 11.47340 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.004373 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.432073 B = 6401.222607 C = 7707.548783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.525 3.475 5 O -0.519 6.519 6 N -0.623 5.623 7 C 0.110 3.890 8 C -0.108 4.108 9 H 0.084 0.916 10 C -0.099 4.099 11 C -0.114 4.114 12 C -0.139 4.139 13 C 0.196 3.804 14 H 0.052 0.948 15 N -0.722 5.722 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.102 4.102 25 H 0.081 0.919 26 C 0.126 3.874 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.538 7.503 3.241 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.312 3.688 5 O -0.393 6.393 6 N -0.360 5.360 7 C -0.013 4.013 8 C -0.128 4.128 9 H 0.102 0.898 10 C -0.137 4.137 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.086 3.914 14 H 0.070 0.930 15 N -0.362 5.362 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.122 4.122 25 H 0.099 0.901 26 C 0.005 3.995 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.028 6.642 3.356 21.366 hybrid contribution 0.682 0.190 0.078 0.712 sum -19.346 6.832 3.435 20.803 Atomic orbital electron populations 1.22827 0.80571 1.03248 0.99992 1.88033 1.19608 1.25407 1.95382 1.22219 0.91901 0.86671 1.02288 1.19817 0.88113 0.83545 0.77356 1.90762 1.74407 1.25762 1.48402 1.49187 1.08094 1.05169 1.73567 1.21769 0.97015 0.81238 1.01285 1.21879 0.94530 0.95157 1.01186 0.89781 1.21289 0.97678 0.94755 1.00013 1.21548 0.94291 0.98353 1.01063 1.22324 0.97132 0.97640 1.00861 1.19957 0.85646 0.89286 0.96561 0.92964 1.42415 1.07702 1.48901 1.37206 1.19253 0.87599 1.20111 1.10147 0.91154 1.24737 0.98258 0.99470 0.98321 1.69664 1.32513 1.29883 1.25757 0.86158 0.84678 0.77224 0.78358 1.20591 1.21869 1.21954 1.22409 0.96662 0.93100 1.00062 0.90092 1.21992 0.77034 0.98728 1.01761 0.89132 0.93905 0.93876 0.90486 0.90440 0.91385 0.91383 0.92129 0.91680 0.92682 0.92525 0.92736 0.92002 0.78182 0.93533 0.89672 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.85 10.24 -55.14 -0.56 -5.42 16 3 C 0.05 0.55 5.63 36.00 0.20 0.75 16 4 C 0.52 8.33 7.94 -10.99 -0.09 8.24 16 5 O -0.52 -10.93 16.79 -14.35 -0.24 -11.17 16 6 N -0.62 -8.94 3.38 -170.86 -0.58 -9.52 16 7 C 0.11 1.12 6.23 -3.43 -0.02 1.10 16 8 C -0.11 -1.24 2.31 -90.36 -0.21 -1.45 16 9 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 10 C -0.10 -1.01 5.70 -27.08 -0.15 -1.17 16 11 C -0.11 -1.38 5.83 -26.54 -0.15 -1.53 16 12 C -0.14 -2.26 5.47 -26.56 -0.15 -2.41 16 13 C 0.20 3.61 2.52 -68.22 -0.17 3.44 16 14 H 0.05 0.99 7.93 -51.92 -0.41 0.58 16 15 N -0.72 -17.41 5.08 -53.70 -0.27 -17.69 16 16 C -0.24 -6.51 9.95 -15.06 -0.15 -6.66 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 20 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C -0.10 -1.58 1.99 -89.89 -0.18 -1.76 16 25 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 26 C 0.13 2.14 6.49 -2.81 -0.02 2.12 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.38 10.04 7.81 -40.82 -0.32 9.72 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.71 8.07 -51.93 -0.42 1.29 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -33.71 345.73 -8.25 -41.97 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.43 Total: 5.02 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.07 Total: 1.61 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.13 Total: -54.60 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.81 Total: -16.58 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.71 -8.25 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992565852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.359 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds