Wall clock time and date at job start Tue Mar 31 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42908 * 113.99754 * 2 1 4 4 H 1.09007 * 109.46970 * 329.54759 * 3 2 1 5 5 C 1.50702 * 109.46816 * 89.54170 * 3 2 1 6 6 O 1.21280 * 120.00144 * 5.00384 * 5 3 2 7 7 N 1.34770 * 119.99598 * 184.99625 * 5 3 2 8 8 C 1.46927 * 120.63334 * 0.02562 * 7 5 3 9 9 C 1.53191 * 108.78041 * 126.41119 * 8 7 5 10 10 C 1.53037 * 109.31352 * 54.63056 * 9 8 7 11 11 C 1.53045 * 109.54018 * 298.63651 * 10 9 8 12 12 H 1.08993 * 109.49837 * 301.41503 * 11 10 9 13 13 N 1.46503 * 109.49612 * 181.31293 * 11 10 9 14 14 C 1.36935 * 119.99317 * 85.00400 * 13 11 10 15 15 H 1.07995 * 120.00483 * 0.02562 * 14 13 11 16 16 C 1.38821 * 119.99506 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99814 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99924 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47253 * 89.99934 * 18 16 14 20 20 H 1.48500 * 109.46980 * 210.00590 * 18 16 14 21 21 H 1.48499 * 109.47015 * 330.00164 * 18 16 14 22 22 C 1.46926 * 120.63268 * 180.02562 * 7 5 3 23 23 C 1.52991 * 109.47129 * 209.54543 * 3 2 1 24 24 C 1.53002 * 117.50096 * 122.56799 * 23 3 2 25 25 C 1.53001 * 60.00040 * 252.51078 * 24 23 3 26 26 H 1.08998 * 109.46673 * 184.83873 * 1 2 3 27 27 H 1.08991 * 109.47013 * 304.83692 * 1 2 3 28 28 H 1.09000 * 109.46766 * 64.84280 * 1 2 3 29 29 H 1.08998 * 109.58634 * 6.61557 * 8 7 5 30 30 H 1.09004 * 109.70398 * 246.26150 * 8 7 5 31 31 H 1.09003 * 109.49691 * 294.68290 * 9 8 7 32 32 H 1.08995 * 109.52645 * 174.60100 * 9 8 7 33 33 H 1.08999 * 109.45992 * 58.66231 * 10 9 8 34 34 H 1.09000 * 109.45987 * 178.61562 * 10 9 8 35 35 H 0.96997 * 120.00300 * 264.99961 * 13 11 10 36 36 H 0.96999 * 119.99670 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.58379 * 353.37724 * 22 7 5 38 38 H 1.08994 * 109.58903 * 113.65577 * 22 7 5 39 39 H 1.09001 * 115.54927 * 268.27701 * 23 3 2 40 40 H 1.09000 * 117.49601 * 0.02562 * 24 23 3 41 41 H 1.09004 * 117.49987 * 145.01949 * 24 23 3 42 42 H 1.09000 * 117.49643 * 252.50728 * 25 24 23 43 43 H 1.08997 * 117.50261 * 107.49022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 1 1.3487 1.9978 -0.5209 5 6 2.2042 1.7690 1.4208 6 8 1.9621 1.0182 2.3420 7 7 2.6467 3.0178 1.6677 8 6 2.9438 3.9390 0.5623 9 6 2.1674 5.2411 0.7832 10 6 2.4962 5.7972 2.1705 11 6 2.0662 4.7910 3.2405 12 1 0.9975 4.5971 3.1490 13 7 2.3526 5.3377 4.5692 14 6 1.4501 6.1696 5.1763 15 1 0.5270 6.4223 4.6759 16 6 1.7212 6.6872 6.4355 17 7 2.8460 6.3789 7.0455 18 14 0.4898 7.8215 7.2640 19 1 -0.4595 7.0153 8.0727 20 1 1.2100 8.7725 8.1484 21 1 -0.2600 8.5783 6.2295 22 6 2.8412 3.4841 3.0474 23 6 3.3641 1.2611 -0.7113 24 6 3.5606 2.1853 -1.9147 25 6 3.4003 0.6784 -2.1255 26 1 -0.3632 -1.0240 0.0867 27 1 -0.3633 0.5870 0.8434 28 1 -0.3633 0.4369 -0.9302 29 1 2.6389 3.4874 -0.3817 30 1 4.0127 4.1508 0.5377 31 1 1.0977 5.0429 0.7149 32 1 2.4520 5.9683 0.0229 33 1 3.5694 5.9720 2.2467 34 1 1.9640 6.7366 2.3206 35 1 3.1815 5.1104 5.0188 36 1 3.0356 6.7409 7.9252 37 1 2.4685 2.7322 3.7431 38 1 3.9021 3.6558 3.2289 39 1 4.2264 1.0793 -0.0698 40 1 2.7254 2.8254 -2.1993 41 1 4.5524 2.6119 -2.0650 42 1 4.2865 0.1136 -2.4147 43 1 2.4596 0.3267 -2.5492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999041692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:16 Heat of formation + Delta-G solvation = -37.082231 kcal Electronic energy + Delta-G solvation = -23243.802248 eV Core-core repulsion = 19904.527032 eV Total energy + Delta-G solvation = -3339.275216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52048 -38.31200 -37.21708 -36.39822 -34.42675 -32.20894 -31.27240 -29.44233 -28.04470 -26.28077 -24.89004 -23.69519 -22.74559 -22.02255 -21.45374 -20.08242 -19.06589 -17.65794 -17.19786 -16.61999 -16.02128 -15.78705 -14.93869 -14.91279 -14.50715 -14.31016 -14.09798 -13.79460 -13.52419 -13.41588 -12.97727 -12.83367 -12.60318 -12.27098 -11.86625 -11.80900 -11.47195 -11.09756 -10.97515 -10.91727 -10.83169 -10.68949 -10.53667 -10.42557 -10.39149 -10.27815 -10.06145 -9.71309 -9.18067 -8.92054 -8.38717 -6.99686 -5.78445 -3.08105 2.66910 2.93532 3.26496 3.42960 3.48021 3.49446 3.89498 4.30424 4.46850 4.57627 4.61055 4.72275 4.78822 4.98841 5.09237 5.15631 5.23283 5.29973 5.33848 5.36824 5.53182 5.56384 5.58193 5.59285 5.69141 5.75065 5.78688 5.81227 5.87011 6.03423 6.15541 6.24194 6.37902 6.53460 6.67929 6.83202 6.91604 7.03686 7.57814 7.68238 8.31658 8.39734 9.50691 10.06032 10.41206 11.44074 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027680 B = 0.003939 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.303491 B = 7106.013513 C = 7512.884378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.107 3.893 4 H 0.084 0.916 5 C 0.492 3.508 6 O -0.527 6.527 7 N -0.600 5.600 8 C 0.102 3.898 9 C -0.135 4.135 10 C -0.137 4.137 11 C 0.169 3.831 12 H 0.048 0.952 13 N -0.721 5.721 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.105 3.895 23 C -0.153 4.153 24 C -0.173 4.173 25 C -0.158 4.158 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -8.093 -21.515 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.045 3.955 4 H 0.101 0.899 5 C 0.278 3.722 6 O -0.403 6.403 7 N -0.335 5.335 8 C -0.021 4.021 9 C -0.174 4.174 10 C -0.178 4.178 11 C 0.058 3.942 12 H 0.067 0.933 13 N -0.362 5.362 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.017 4.017 23 C -0.172 4.172 24 C -0.210 4.210 25 C -0.195 4.195 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.092 -8.581 -20.933 22.623 hybrid contribution -0.541 0.968 0.748 1.338 sum -0.449 -7.613 -20.185 21.577 Atomic orbital electron populations 1.22862 0.80668 1.03317 0.99920 1.87994 1.19893 1.24899 1.94410 1.21513 0.94748 0.86580 0.92648 0.89873 1.21136 0.77611 0.81734 0.91719 1.90714 1.50094 1.53607 1.45871 1.48114 1.65261 1.12227 1.07879 1.21995 1.00183 0.90507 0.89423 1.21960 1.00198 0.96144 0.99073 1.22278 1.01449 1.00740 0.93290 1.20461 0.97098 0.89911 0.86718 0.93348 1.42311 1.23014 1.56283 1.14616 1.19203 0.99017 1.20174 0.98689 0.91184 1.24748 0.97528 1.01067 0.97424 1.69661 1.24162 1.48632 1.15490 0.86189 0.80341 0.80302 0.79339 1.21673 1.21744 1.20768 1.22000 1.00433 0.97841 0.81471 1.22126 0.96755 1.07044 0.91232 1.23181 1.03725 0.93529 1.00550 1.22886 1.03682 0.95549 0.97340 0.89210 0.93467 0.94145 0.89792 0.91256 0.92042 0.91294 0.92422 0.91578 0.78174 0.93443 0.89018 0.91654 0.86759 0.88247 0.87788 0.88377 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.79 101.05 1.09 1.39 16 2 O -0.35 -4.73 9.69 -55.09 -0.53 -5.26 16 3 C 0.11 1.28 1.97 -27.89 -0.06 1.23 16 4 H 0.08 0.82 6.86 -51.93 -0.36 0.47 16 5 C 0.49 7.85 6.99 -10.99 -0.08 7.77 16 6 O -0.53 -10.75 15.92 -14.30 -0.23 -10.97 16 7 N -0.60 -8.99 2.97 -172.78 -0.51 -9.50 16 8 C 0.10 1.15 5.57 -3.71 -0.02 1.13 16 9 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 10 C -0.14 -2.31 5.46 -26.69 -0.15 -2.46 16 11 C 0.17 3.38 2.92 -67.82 -0.20 3.18 16 12 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -18.09 5.13 -53.32 -0.27 -18.36 16 14 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.11 1.91 5.90 -3.72 -0.02 1.89 16 23 C -0.15 -1.49 4.46 -90.62 -0.40 -1.89 16 24 C -0.17 -1.17 8.44 -26.73 -0.23 -1.39 16 25 C -0.16 -1.20 10.04 -26.73 -0.27 -1.47 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.74 3.02 -51.93 -0.16 0.59 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.38 10.22 7.80 -40.82 -0.32 9.91 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.09 1.90 7.01 -51.92 -0.36 1.54 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.11 1.23 8.06 -51.93 -0.42 0.82 16 40 H 0.10 0.57 7.35 -51.93 -0.38 0.19 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -33.19 343.69 -8.43 -41.63 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.03 Total: 6.99 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.73 Total: 0.33 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.06 Total: -55.29 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.76 Total: -16.23 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.19 -8.43 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999041692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds