Wall clock time and date at job start Tue Mar 31 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48818 * 2 1 4 4 O 1.42900 * 109.48061 * 120.03275 * 2 1 3 5 5 C 1.42902 * 114.09912 * 181.14198 * 4 2 1 6 6 C 1.53093 * 109.41196 * 298.83992 * 5 4 2 7 7 C 1.53176 * 109.16501 * 57.60694 * 6 5 4 8 8 C 1.53098 * 109.48019 * 239.97442 * 2 1 3 9 9 H 1.09000 * 109.57392 * 62.46948 * 8 2 1 10 10 C 1.50703 * 109.51821 * 302.31581 * 8 2 1 11 11 O 1.21279 * 120.00457 * 0.31146 * 10 8 2 12 12 N 1.34774 * 119.99601 * 180.31639 * 10 8 2 13 13 C 1.46503 * 119.99954 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.85121 * 28.71440 * 13 12 10 15 15 C 1.53775 * 113.61406 * 159.91555 * 13 12 10 16 16 C 1.53780 * 87.08454 * 89.11653 * 15 13 12 17 17 H 1.09000 * 113.62103 * 140.06572 * 16 15 13 18 18 N 1.46507 * 113.61129 * 270.88348 * 16 15 13 19 19 C 1.36940 * 119.99715 * 200.00435 * 18 16 15 20 20 H 1.07995 * 120.00114 * 359.72511 * 19 18 16 21 21 C 1.38810 * 119.99474 * 179.72681 * 19 18 16 22 22 N 1.31621 * 119.99722 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00549 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47201 * 90.00100 * 23 21 19 25 25 H 1.48496 * 109.47263 * 210.00238 * 23 21 19 26 26 H 1.48501 * 109.46981 * 330.00337 * 23 21 19 27 27 C 1.53778 * 87.08251 * 25.43175 * 16 15 13 28 28 H 1.08997 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46933 * 300.02827 * 1 2 3 30 30 H 1.08998 * 109.47124 * 60.02621 * 1 2 3 31 31 H 1.08999 * 109.48026 * 178.85699 * 5 4 2 32 32 H 1.09003 * 109.48194 * 58.81831 * 5 4 2 33 33 H 1.09001 * 109.52192 * 297.70221 * 6 5 4 34 34 H 1.09001 * 109.57439 * 177.54638 * 6 5 4 35 35 H 1.08999 * 109.54515 * 183.14628 * 7 6 5 36 36 H 1.09011 * 109.54034 * 62.88792 * 7 6 5 37 37 H 0.96998 * 120.00055 * 359.97438 * 12 10 8 38 38 H 1.08996 * 113.61842 * 334.56387 * 15 13 12 39 39 H 1.09004 * 113.61472 * 203.66069 * 15 13 12 40 40 H 0.96993 * 119.99944 * 19.72486 * 18 16 15 41 41 H 0.96997 * 120.00326 * 179.97438 * 22 21 19 42 42 H 1.08993 * 113.61423 * 89.11455 * 27 16 15 43 43 H 1.08995 * 113.61668 * 220.02419 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6743 1.1663 5 6 3.4307 -0.7094 1.2790 6 6 4.0176 -1.4601 0.0808 7 6 3.5710 -0.7709 -1.2122 8 6 2.0406 -0.7222 -1.2496 9 1 1.7148 -0.1852 -2.1405 10 6 1.4926 -2.1258 -1.2792 11 8 0.7606 -2.5099 -0.3918 12 7 1.8162 -2.9542 -2.2918 13 6 1.2840 -4.3189 -2.3203 14 1 0.3180 -4.4070 -1.8232 15 6 1.3202 -4.9652 -3.7152 16 6 2.7304 -5.4656 -3.3604 17 1 2.9330 -6.4801 -3.7037 18 7 3.7941 -4.5223 -3.7142 19 6 5.0837 -4.9631 -3.8473 20 1 5.3174 -6.0052 -3.6872 21 6 6.0906 -4.0703 -4.1880 22 7 7.3302 -4.4939 -4.3155 23 14 5.6863 -2.2679 -4.4656 24 1 5.8075 -1.5301 -3.1825 25 1 6.6319 -1.6954 -5.4571 26 1 4.2978 -2.1452 -4.9777 27 6 2.3021 -5.3864 -1.8856 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 3.7099 -1.2204 2.2004 32 1 3.8193 0.3089 1.2957 33 1 3.6612 -2.4902 0.0863 34 1 5.1059 -1.4509 0.1414 35 1 3.9392 -1.3326 -2.0707 36 1 3.9690 0.2436 -1.2408 37 1 2.4014 -2.6470 -3.0017 38 1 1.3057 -4.2431 -4.5315 39 1 0.5924 -5.7663 -3.8443 40 1 3.5841 -3.5863 -3.8580 41 1 8.0338 -3.8702 -4.5539 42 1 1.8427 -6.3024 -1.5146 43 1 3.0802 -5.0042 -1.2249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022008886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:00 Heat of formation + Delta-G solvation = -66.477580 kcal Electronic energy + Delta-G solvation = -24238.222525 eV Core-core repulsion = 20897.672631 eV Total energy + Delta-G solvation = -3340.549894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86870 -40.37167 -38.70597 -35.58933 -35.08498 -33.81296 -33.56840 -32.45299 -28.96931 -26.62731 -26.47234 -25.72561 -24.29908 -23.19498 -22.55110 -21.05095 -20.37453 -19.47414 -18.04256 -17.44305 -16.97884 -16.74299 -16.71645 -16.26630 -16.01698 -15.74091 -15.37454 -14.90639 -14.83143 -14.69339 -13.97728 -13.79864 -13.58286 -13.53796 -13.33320 -13.24410 -12.94540 -12.78223 -12.67899 -12.54147 -12.13570 -12.04638 -11.86086 -11.75275 -11.66419 -11.38337 -11.23561 -10.88499 -10.62288 -10.29278 -9.91751 -9.32797 -8.03508 -5.38458 1.29067 1.37626 1.44343 1.65326 2.16011 2.45911 2.88770 3.26137 3.40609 3.53369 3.65878 3.70198 3.74959 3.83845 3.90993 4.02328 4.24065 4.28158 4.31003 4.38165 4.42300 4.59660 4.62067 4.69579 4.79650 4.80732 4.86123 4.91216 4.92414 5.01582 5.06009 5.07349 5.15354 5.19738 5.30818 5.48155 5.70455 5.79132 6.20213 6.37139 6.52010 7.04470 7.28836 7.79316 7.97662 9.17780 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.007078 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.260556 B = 3955.138305 C = 4907.690996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 H 0.088 0.912 4 O -0.388 6.388 5 C 0.062 3.938 6 C -0.159 4.159 7 C -0.120 4.120 8 C -0.143 4.143 9 H 0.132 0.868 10 C 0.521 3.479 11 O -0.551 6.551 12 N -0.709 5.709 13 C 0.126 3.874 14 H 0.098 0.902 15 C -0.139 4.139 16 C 0.148 3.852 17 H 0.064 0.936 18 N -0.728 5.728 19 C -0.233 4.233 20 H 0.055 0.945 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.938 3.062 24 H -0.257 1.257 25 H -0.299 1.299 26 H -0.247 1.247 27 C -0.178 4.178 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.395 0.605 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.361 0.639 41 H 0.257 0.743 42 H 0.102 0.898 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 11.329 5.493 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.106 0.894 4 O -0.307 6.307 5 C -0.014 4.014 6 C -0.197 4.197 7 C -0.157 4.157 8 C -0.164 4.164 9 H 0.149 0.851 10 C 0.309 3.691 11 O -0.429 6.429 12 N -0.361 5.361 13 C 0.020 3.980 14 H 0.116 0.884 15 C -0.178 4.178 16 C 0.038 3.962 17 H 0.082 0.918 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.073 0.927 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.764 3.236 24 H -0.182 1.182 25 H -0.226 1.226 26 H -0.171 1.171 27 C -0.220 4.220 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.231 0.769 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.196 0.804 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.541 10.822 6.248 19.173 hybrid contribution 1.246 0.637 -0.770 1.597 sum -13.295 11.458 5.478 18.386 Atomic orbital electron populations 1.22061 0.92573 1.04210 1.02756 1.22011 0.95908 0.94452 0.82743 0.89397 1.88016 1.21206 1.78516 1.42994 1.22630 0.80825 1.00286 0.97666 1.22170 1.01717 0.99423 0.96369 1.21717 0.92969 1.03084 0.97974 1.22228 0.97089 0.93678 1.03411 0.85063 1.20752 0.79884 0.87784 0.80679 1.90598 1.37846 1.77391 1.37021 1.45950 1.50764 1.13099 1.26327 1.21802 0.97000 0.80835 0.98319 0.88402 1.23710 0.97360 1.01357 0.95378 1.21446 0.87665 0.93584 0.93488 0.91769 1.42428 1.03968 1.06726 1.84020 1.19014 0.84318 0.94720 1.38324 0.92703 1.25517 0.94917 1.02753 1.02240 1.69889 1.00933 1.35925 1.56554 0.85711 0.78441 0.80798 0.78635 1.18221 1.22610 1.17133 1.24156 0.98802 0.99604 0.99415 0.91299 0.91787 0.89699 0.88705 0.90774 0.94218 0.90228 0.92633 0.87856 0.76865 0.90686 0.85251 0.80397 0.93386 0.87986 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.21 71.98 0.66 -2.87 16 2 C 0.11 2.46 2.84 30.63 0.09 2.55 16 3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 4 O -0.39 -11.15 9.47 -133.11 -1.26 -12.41 16 5 C 0.06 1.52 6.84 72.01 0.49 2.01 16 6 C -0.16 -4.52 5.87 30.68 0.18 -4.34 16 7 C -0.12 -3.07 5.46 30.71 0.17 -2.91 16 8 C -0.14 -3.44 2.60 -11.45 -0.03 -3.47 16 9 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 10 C 0.52 15.99 5.64 87.66 0.49 16.49 16 11 O -0.55 -19.94 12.56 12.84 0.16 -19.78 16 12 N -0.71 -21.57 4.96 -440.03 -2.18 -23.75 16 13 C 0.13 3.71 4.26 45.52 0.19 3.91 16 14 H 0.10 2.83 7.59 -2.39 -0.02 2.81 16 15 C -0.14 -3.68 7.54 31.12 0.23 -3.44 16 16 C 0.15 5.28 4.55 45.52 0.21 5.49 16 17 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 18 N -0.73 -31.89 4.93 -320.44 -1.58 -33.47 16 19 C -0.23 -12.85 10.46 84.03 0.88 -11.97 16 20 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 21 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 22 N -0.98 -61.68 13.97 21.65 0.30 -61.37 16 23 Si 0.94 41.66 27.04 68.60 1.86 43.51 16 24 H -0.26 -10.56 6.46 99.48 0.64 -9.92 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.25 -9.50 6.52 99.48 0.65 -8.85 16 27 C -0.18 -5.98 7.68 31.12 0.24 -5.74 16 28 H 0.07 1.99 5.31 -2.39 -0.01 1.97 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.39 7.39 -2.39 -0.02 1.38 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.65 6.08 -2.39 -0.01 1.64 16 36 H 0.10 2.05 8.14 -2.38 -0.02 2.04 16 37 H 0.40 12.03 5.72 -92.71 -0.53 11.50 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.36 14.71 3.39 -92.71 -0.31 14.40 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.91 329.15 1.61 -69.30 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: 0.04 Total: 45.38 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.28 Total: -7.41 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -3.46 Total: -118.59 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.10 Total: -32.18 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.86 Total: 43.51 kcal Total: -70.91 1.61 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022008886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.821 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds