Wall clock time and date at job start Tue Mar 31 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00106 * 2 1 4 4 H 1.08998 * 109.46730 * 330.00001 * 3 2 1 5 5 C 1.53004 * 109.47016 * 89.99359 * 3 2 1 6 6 C 1.50694 * 109.47243 * 209.99635 * 3 2 1 7 7 O 1.21288 * 119.99977 * 352.84176 * 6 3 2 8 8 N 1.34771 * 120.00292 * 172.84416 * 6 3 2 9 9 C 1.48263 * 127.73710 * 175.09705 * 8 6 3 10 10 C 1.54708 * 104.66436 * 141.20701 * 9 8 6 11 11 C 1.53047 * 104.47742 * 23.67645 * 10 9 8 12 12 C 1.53896 * 111.34240 * 238.27036 * 11 10 9 13 13 C 1.55135 * 101.45120 * 273.27944 * 12 11 10 14 14 N 1.47537 * 105.06762 * 324.20871 * 13 12 11 15 15 C 1.36936 * 125.67109 * 203.96778 * 14 13 12 16 16 H 1.08004 * 120.00055 * 180.02562 * 15 14 13 17 17 C 1.38819 * 120.00310 * 0.03134 * 15 14 13 18 18 N 1.31619 * 119.99436 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00391 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46928 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47359 * 119.99817 * 19 17 15 22 22 H 1.48501 * 109.46866 * 239.99992 * 19 17 15 23 23 C 1.47600 * 108.52162 * 23.93871 * 14 13 12 24 24 C 1.48455 * 127.73249 * 355.12107 * 8 6 3 25 25 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47441 * 300.00244 * 1 2 3 27 27 H 1.09001 * 109.46884 * 60.00001 * 1 2 3 28 28 H 1.08996 * 109.47313 * 305.99815 * 5 3 2 29 29 H 1.09008 * 109.47139 * 65.99457 * 5 3 2 30 30 H 1.08997 * 109.46975 * 185.99306 * 5 3 2 31 31 H 1.08995 * 110.39936 * 22.40868 * 9 8 6 32 32 H 1.09002 * 110.49503 * 260.05038 * 9 8 6 33 33 H 1.09000 * 110.43670 * 264.92724 * 10 9 8 34 34 H 1.08999 * 110.53695 * 142.47435 * 10 9 8 35 35 H 1.09007 * 111.02532 * 155.23622 * 12 11 10 36 36 H 1.09003 * 111.06073 * 31.34364 * 12 11 10 37 37 H 1.09003 * 110.33773 * 83.14268 * 13 12 11 38 38 H 1.08997 * 110.33638 * 205.27902 * 13 12 11 39 39 H 0.96999 * 120.00074 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.94592 * 238.65982 * 23 14 13 41 41 H 1.09000 * 109.96391 * 117.40699 * 23 14 13 42 42 H 1.08992 * 110.46448 * 99.67149 * 24 8 6 43 43 H 1.08998 * 110.46198 * 337.08882 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2175 1.7714 1.4425 6 6 3.3386 1.2639 -0.7103 7 8 3.8082 0.2005 -1.0565 8 7 4.0050 2.4082 -0.9609 9 6 5.3562 2.5608 -1.5518 10 6 5.2410 3.7934 -2.4795 11 6 4.0651 4.5914 -1.9114 12 6 2.9602 4.7873 -2.9647 13 6 3.4450 6.0735 -3.6840 14 7 4.0523 6.9002 -2.6236 15 6 4.1968 8.2615 -2.6567 16 1 4.6572 8.7761 -1.8262 17 6 3.7515 8.9803 -3.7577 18 7 3.1908 8.3532 -4.7699 19 14 3.9480 10.8373 -3.8026 20 1 4.6032 11.2961 -2.5514 21 1 4.7848 11.2186 -4.9686 22 1 2.6117 11.4737 -3.9231 23 6 4.4763 6.0133 -1.5226 24 6 3.5506 3.7985 -0.7065 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.2756 1.7001 1.9863 29 1 2.9641 1.1401 1.9246 30 1 2.5607 2.8060 1.4444 31 1 5.6208 1.6746 -2.1285 32 1 6.0959 2.7403 -0.7716 33 1 5.0304 3.4815 -3.5025 34 1 6.1554 4.3857 -2.4437 35 1 1.9916 4.9457 -2.4906 36 1 2.9225 3.9439 -3.6543 37 1 4.1869 5.8261 -4.4434 38 1 2.6016 6.5958 -4.1354 39 1 2.8799 8.8553 -5.5394 40 1 3.9788 6.3049 -0.5977 41 1 5.5577 6.0669 -1.3970 42 1 3.9886 4.1798 0.2158 43 1 2.4625 3.8410 -0.6588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041114915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:29 Heat of formation + Delta-G solvation = -64.443677 kcal Electronic energy + Delta-G solvation = -23297.990654 eV Core-core repulsion = 19957.528957 eV Total energy + Delta-G solvation = -3340.461697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57690 -40.08391 -38.48476 -37.11688 -34.46457 -33.10392 -31.58355 -30.57712 -29.88167 -27.71735 -27.27819 -26.00250 -24.62350 -23.34947 -22.17028 -20.54481 -20.10889 -18.83398 -18.41454 -17.58972 -17.00147 -16.78563 -16.42783 -16.10993 -15.79199 -15.56900 -15.39416 -14.79394 -14.32419 -14.26591 -14.05987 -13.67442 -13.54504 -13.40158 -13.27673 -13.04671 -12.93893 -12.75350 -12.66285 -12.54400 -12.38229 -12.12667 -11.96025 -11.75409 -11.58119 -11.40086 -11.16226 -11.03913 -10.70976 -10.53997 -9.78258 -8.83530 -7.73785 -5.17142 1.49215 1.49754 1.50058 1.60032 1.65990 2.52467 2.89145 3.35048 3.37460 3.54672 3.65252 3.71718 3.87637 3.93859 4.02114 4.23654 4.33140 4.37627 4.47013 4.54576 4.55714 4.64149 4.68426 4.73371 4.79369 4.81426 4.85618 4.88648 4.94326 5.04740 5.06878 5.18187 5.22041 5.32562 5.41649 5.52157 5.66384 5.86144 6.06848 6.34183 6.46934 7.06132 7.14509 7.82530 8.46882 9.28252 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.003862 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.508062 B = 7249.294664 C = 7540.061485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.073 3.927 4 H 0.105 0.895 5 C -0.163 4.163 6 C 0.530 3.470 7 O -0.578 6.578 8 N -0.616 5.616 9 C 0.110 3.890 10 C -0.112 4.112 11 C -0.075 4.075 12 C -0.117 4.117 13 C 0.158 3.842 14 N -0.626 5.626 15 C -0.231 4.231 16 H 0.084 0.916 17 C -0.069 4.069 18 N -0.951 5.951 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.297 1.297 22 H -0.293 1.293 23 C 0.148 3.852 24 C 0.121 3.879 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.067 0.933 37 H -0.019 1.019 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.102 0.898 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -11.660 12.324 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.012 3.988 4 H 0.123 0.877 5 C -0.221 4.221 6 C 0.320 3.680 7 O -0.457 6.457 8 N -0.350 5.350 9 C -0.012 4.012 10 C -0.150 4.150 11 C -0.077 4.077 12 C -0.155 4.155 13 C 0.033 3.967 14 N -0.352 5.352 15 C -0.360 4.360 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.220 1.220 23 C 0.023 3.977 24 C -0.001 4.001 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.085 0.915 37 H -0.001 1.001 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.120 0.880 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.312 -12.329 12.075 17.572 hybrid contribution 0.076 1.259 -0.844 1.517 sum -3.236 -11.071 11.231 16.098 Atomic orbital electron populations 1.23103 0.78598 1.04270 1.01434 1.87987 1.21946 1.26270 1.95211 1.21994 0.91863 0.86811 0.98083 0.87716 1.22214 1.04268 1.02612 0.92972 1.20603 0.86803 0.81996 0.78617 1.90679 1.70124 1.30771 1.54127 1.49056 1.18477 1.05868 1.61629 1.22445 0.84006 0.97903 0.96813 1.22401 0.98347 0.95462 0.98773 1.21477 0.95992 0.94397 0.95791 1.22823 0.97536 0.97610 0.97534 1.21685 0.96355 0.89161 0.89527 1.44943 1.70231 1.02291 1.17749 1.19508 1.32059 0.82303 1.02148 0.89793 1.25582 1.01736 1.02281 0.96492 1.70073 1.47276 1.34406 1.08364 0.85031 0.76829 0.80158 0.77463 1.18893 1.22449 1.22013 1.21426 0.97078 0.88042 0.91181 1.22492 1.01306 0.78689 0.97576 0.88323 0.91700 0.93201 0.89139 0.92452 0.89154 0.91138 0.88923 0.91977 0.89865 0.91034 0.91468 1.00069 0.91408 0.94588 0.94018 0.95130 0.88006 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -9.76 9.89 -130.04 -1.29 -11.05 16 3 C 0.07 1.56 2.47 29.85 0.07 1.64 16 4 H 0.11 1.79 7.14 -2.39 -0.02 1.78 16 5 C -0.16 -2.51 9.39 71.98 0.68 -1.84 16 6 C 0.53 15.07 7.25 87.66 0.64 15.71 16 7 O -0.58 -21.81 16.77 15.88 0.27 -21.54 16 8 N -0.62 -15.18 3.33 -808.65 -2.69 -17.87 16 9 C 0.11 2.69 7.09 86.62 0.61 3.30 16 10 C -0.11 -3.06 6.24 31.19 0.19 -2.87 16 11 C -0.08 -2.18 0.79 -51.80 -0.04 -2.22 16 12 C -0.12 -4.00 5.93 31.63 0.19 -3.81 16 13 C 0.16 7.47 5.81 86.91 0.51 7.97 16 14 N -0.63 -30.22 3.42 -692.26 -2.37 -32.58 16 15 C -0.23 -12.37 10.29 84.04 0.86 -11.51 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 18 N -0.95 -55.74 10.09 21.65 0.22 -55.52 16 19 Si 0.98 44.53 29.55 68.60 2.03 46.56 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 C 0.15 5.27 6.40 86.18 0.55 5.82 16 24 C 0.12 2.60 4.58 86.05 0.39 2.99 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 0.70 7.77 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.09 1.04 7.77 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 1.12 6.73 -2.39 -0.02 1.10 16 31 H 0.07 1.88 7.85 -2.39 -0.02 1.86 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.86 7.49 -2.39 -0.02 1.84 16 34 H 0.08 2.30 7.33 -2.39 -0.02 2.28 16 35 H 0.07 2.30 7.75 -2.38 -0.02 2.28 16 36 H 0.07 2.20 7.70 -2.39 -0.02 2.18 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.07 3.73 5.88 -2.39 -0.01 3.71 16 39 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.04 1.38 7.78 -2.39 -0.02 1.36 16 41 H 0.03 1.08 7.38 -2.39 -0.02 1.07 16 42 H 0.10 1.76 7.79 -2.39 -0.02 1.74 16 43 H 0.10 1.79 6.53 -2.39 -0.02 1.78 16 Total: -1.00 -72.38 336.58 3.50 -68.88 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.98 Total: 9.71 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.35 Total: 13.42 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.84 Total: -105.98 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.02 Total: -32.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.38 3.50 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041114915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.438 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds