Wall clock time and date at job start Tue Mar 31 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49013 * 2 1 4 4 O 1.42909 * 109.47878 * 120.02788 * 2 1 3 5 5 C 1.42906 * 114.09441 * 181.14244 * 4 2 1 6 6 C 1.53084 * 109.41293 * 298.83847 * 5 4 2 7 7 C 1.53178 * 109.16619 * 57.61112 * 6 5 4 8 8 C 1.53088 * 109.47987 * 239.96696 * 2 1 3 9 9 H 1.09004 * 109.52263 * 62.44224 * 8 2 1 10 10 C 1.50694 * 109.52375 * 302.31557 * 8 2 1 11 11 O 1.21277 * 120.00234 * 333.71248 * 10 8 2 12 12 N 1.34781 * 119.99790 * 153.71869 * 10 8 2 13 13 C 1.46495 * 120.00201 * 5.10218 * 12 10 8 14 14 C 1.46502 * 119.99810 * 185.10468 * 12 10 8 15 15 C 1.53949 * 113.74229 * 220.81959 * 14 12 10 16 16 N 1.47576 * 86.11646 * 222.04862 * 15 14 12 17 17 C 1.36939 * 134.49057 * 204.64034 * 16 15 14 18 18 H 1.07996 * 120.00487 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99855 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47347 * 89.99642 * 21 19 17 23 23 H 1.48499 * 109.46962 * 210.00202 * 21 19 17 24 24 H 1.48501 * 109.46839 * 329.99779 * 21 19 17 25 25 C 1.47577 * 91.01652 * 24.64398 * 16 15 14 26 26 H 1.08997 * 109.47657 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47284 * 300.03099 * 1 2 3 28 28 H 1.09006 * 109.47187 * 60.02828 * 1 2 3 29 29 H 1.08994 * 109.48074 * 58.82461 * 5 4 2 30 30 H 1.09000 * 109.47887 * 178.84731 * 5 4 2 31 31 H 1.09008 * 109.52591 * 177.51733 * 6 5 4 32 32 H 1.08997 * 109.52540 * 297.70472 * 6 5 4 33 33 H 1.08998 * 109.54409 * 183.14869 * 7 6 5 34 34 H 1.09009 * 109.54275 * 62.88367 * 7 6 5 35 35 H 1.08999 * 109.47608 * 204.70259 * 13 12 10 36 36 H 1.08997 * 109.47264 * 324.70232 * 13 12 10 37 37 H 1.08994 * 109.47260 * 84.70250 * 13 12 10 38 38 H 1.08995 * 112.94623 * 352.55911 * 14 12 10 39 39 H 1.08993 * 113.76824 * 336.35630 * 15 14 12 40 40 H 1.08998 * 113.76484 * 107.74455 * 15 14 12 41 41 H 0.96999 * 120.00100 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76778 * 221.05494 * 25 16 15 43 43 H 1.08992 * 113.77018 * 89.66207 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 8 2.0065 -0.6742 1.1665 5 6 3.4307 -0.7093 1.2791 6 6 4.0175 -1.4601 0.0810 7 6 3.5710 -0.7710 -1.2121 8 6 2.0405 -0.7223 -1.2495 9 1 1.7138 -0.1850 -2.1399 10 6 1.4926 -2.1259 -1.2790 11 8 1.1882 -2.6799 -0.2440 12 7 1.3411 -2.7655 -2.4556 13 6 1.8119 -2.1415 -3.6945 14 6 0.7055 -4.0848 -2.4955 15 6 1.3877 -5.0726 -3.4593 16 7 0.0235 -5.4700 -3.8581 17 6 -0.5269 -6.6007 -4.4000 18 1 -1.5865 -6.6409 -4.6047 19 6 0.2772 -7.6955 -4.6862 20 7 1.5687 -7.6465 -4.4372 21 14 -0.4734 -9.2377 -5.4261 22 1 -0.4427 -9.1415 -6.9076 23 1 0.3051 -10.4250 -4.9908 24 1 -1.8795 -9.3726 -4.9680 25 6 -0.5093 -4.1593 -3.4383 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5143 0.8898 28 1 -0.3634 0.5134 -0.8903 29 1 3.8192 0.3089 1.2958 30 1 3.7099 -1.2201 2.2007 31 1 5.1058 -1.4498 0.1422 32 1 3.6612 -2.4902 0.0866 33 1 3.9391 -1.3328 -2.0705 34 1 3.9689 0.2435 -1.2408 35 1 1.2507 -2.5416 -4.5390 36 1 1.6630 -1.0632 -3.6377 37 1 2.8722 -2.3552 -3.8289 38 1 0.5171 -4.4960 -1.5038 39 1 1.9548 -4.5894 -4.2548 40 1 1.9460 -5.8622 -2.9565 41 1 2.1305 -8.4116 -4.6369 42 1 -1.4657 -4.2198 -2.9187 43 1 -0.4995 -3.4078 -4.2277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042661461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:55 Heat of formation + Delta-G solvation = -21.159388 kcal Electronic energy + Delta-G solvation = -23684.101525 eV Core-core repulsion = 20345.516776 eV Total energy + Delta-G solvation = -3338.584750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65396 -38.72877 -37.15611 -34.52031 -33.49788 -32.77353 -31.89030 -28.27141 -27.47484 -26.58097 -24.87115 -24.78386 -23.32187 -22.22704 -21.33057 -19.12465 -18.28532 -17.15112 -16.72735 -16.31747 -15.87975 -15.60135 -15.08063 -14.82637 -14.72761 -14.02820 -13.83878 -13.63067 -13.02759 -12.76829 -12.60590 -12.47237 -12.25578 -12.18121 -11.88698 -11.76654 -11.62106 -11.49116 -11.28361 -11.10494 -10.89442 -10.77551 -10.68796 -10.43311 -10.18864 -10.05403 -9.55676 -9.47837 -9.07407 -8.80651 -8.04297 -6.91248 -5.78981 -3.11942 2.98113 3.31364 3.39777 3.44360 3.46117 3.83589 4.44845 4.48534 4.64436 4.70715 4.87414 4.91863 5.12374 5.21431 5.24754 5.26588 5.39214 5.46378 5.48045 5.53294 5.55646 5.61209 5.68331 5.75791 5.80802 5.87625 5.94219 6.01503 6.12066 6.18837 6.23830 6.29147 6.44388 6.59296 6.84726 7.20639 7.33239 7.37605 7.52969 7.85594 7.95456 8.61140 9.02224 9.68221 10.55678 11.38171 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.003988 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.540477 B = 7019.582935 C = 7211.238261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 H 0.059 0.941 4 O -0.356 6.356 5 C 0.065 3.935 6 C -0.160 4.160 7 C -0.109 4.109 8 C -0.145 4.145 9 H 0.098 0.902 10 C 0.518 3.482 11 O -0.520 6.520 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.092 3.908 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.223 4.223 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.107 3.893 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 18.710 5.772 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.077 0.923 4 O -0.274 6.274 5 C -0.012 4.012 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.167 4.167 9 H 0.116 0.884 10 C 0.305 3.695 11 O -0.396 6.396 12 N -0.337 5.337 13 C -0.066 4.066 14 C -0.012 4.012 15 C 0.031 3.969 16 N -0.333 5.333 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.020 4.020 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.260 17.966 6.342 19.523 hybrid contribution 0.001 -0.696 -1.063 1.271 sum 4.261 17.270 5.278 18.555 Atomic orbital electron populations 1.21861 0.92991 1.04236 1.01837 1.21808 0.95385 0.93536 0.84272 0.92303 1.88080 1.20039 1.77744 1.41557 1.22473 0.81840 0.98556 0.98344 1.22217 1.00718 1.01769 0.95101 1.21502 0.92760 1.01470 0.98971 1.22157 0.97631 0.95749 1.01134 0.88414 1.20245 0.78340 0.87329 0.83574 1.90718 1.49569 1.67393 1.31871 1.48064 1.59465 1.19607 1.06539 1.21784 0.99792 0.97264 0.87762 1.23972 0.94860 0.81326 1.01011 1.22611 0.89074 0.92970 0.92263 1.45656 1.04319 1.09328 1.73948 1.18999 0.92656 0.89077 1.34366 0.90072 1.24799 0.95587 0.98323 1.01587 1.69819 1.03511 1.30512 1.52905 0.86093 0.78160 0.82583 0.78774 1.21589 1.21565 1.20527 1.22982 0.96011 0.88734 0.94242 0.90480 0.91887 0.91578 0.93880 0.89130 0.90971 0.90193 0.90791 0.91000 0.90264 0.91915 0.92777 0.86695 0.95259 0.90662 0.93566 0.93594 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.25 37.16 0.34 -1.45 16 2 C 0.11 1.28 2.85 -26.69 -0.08 1.21 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 O -0.36 -5.08 8.99 -55.64 -0.50 -5.58 16 5 C 0.06 0.73 6.84 37.20 0.25 0.98 16 6 C -0.16 -1.82 5.80 -26.60 -0.15 -1.97 16 7 C -0.11 -1.11 5.48 -26.55 -0.15 -1.26 16 8 C -0.14 -1.69 1.90 -91.64 -0.17 -1.87 16 9 H 0.10 0.92 6.17 -51.93 -0.32 0.60 16 10 C 0.52 8.27 5.07 -10.99 -0.06 8.21 16 11 O -0.52 -10.26 12.82 -14.85 -0.19 -10.45 16 12 N -0.60 -9.81 3.10 -175.75 -0.54 -10.35 16 13 C 0.08 0.99 8.52 59.84 0.51 1.50 16 14 C 0.09 1.86 4.43 -70.14 -0.31 1.55 16 15 C 0.16 3.73 6.95 -2.98 -0.02 3.71 16 16 N -0.61 -15.73 3.70 -178.10 -0.66 -16.39 16 17 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.44 11.38 55.49 0.63 -26.81 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 2.25 8.42 -2.98 -0.03 2.23 16 26 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.08 1.18 6.98 -51.93 -0.36 0.82 16 33 H 0.07 0.75 7.43 -51.93 -0.39 0.37 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.08 1.10 6.13 -51.93 -0.32 0.78 16 36 H 0.06 0.60 6.00 -51.93 -0.31 0.29 16 37 H 0.05 0.65 7.81 -51.93 -0.41 0.24 16 38 H 0.12 2.57 7.19 -51.93 -0.37 2.20 16 39 H 0.03 0.69 6.83 -51.93 -0.35 0.33 16 40 H 0.08 2.02 7.15 -51.93 -0.37 1.65 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 43 H 0.03 0.67 6.77 -51.93 -0.35 0.32 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -33.35 328.64 -8.25 -41.60 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.81 Total: -0.25 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.11 Total: 6.07 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.57 Total: -53.55 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.69 Total: -16.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.35 -8.25 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042661461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.442 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds