Wall clock time and date at job start Tue Mar 31 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.64103 * 2 1 4 4 C 1.54319 * 110.71847 * 236.65507 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36937 * 125.64810 * 178.92151 * 5 4 2 7 7 H 1.08000 * 119.99681 * 0.02562 * 6 5 4 8 8 C 1.38803 * 120.00201 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99977 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00335 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47052 * 60.00367 * 10 8 6 12 12 H 1.48496 * 109.47291 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47217 * 300.00554 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 H 1.09003 * 109.51759 * 299.87900 * 20 18 17 22 22 C 1.53173 * 109.52546 * 179.68769 * 20 18 17 23 23 C 1.53177 * 109.03687 * 183.11265 * 22 20 18 24 24 C 1.53095 * 109.15881 * 56.98263 * 23 22 20 25 25 O 1.42905 * 109.41705 * 302.38824 * 24 23 22 26 26 C 1.42898 * 114.09510 * 61.16176 * 25 24 23 27 27 H 1.09003 * 109.47263 * 296.86643 * 1 2 3 28 28 H 1.09000 * 109.46908 * 56.86577 * 1 2 3 29 29 H 1.09003 * 109.47343 * 176.86280 * 1 2 3 30 30 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 31 31 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 32 32 H 0.97002 * 119.99741 * 180.02562 * 9 8 6 33 33 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 34 34 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 35 35 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 36 36 H 1.09003 * 109.54113 * 302.98140 * 22 20 18 37 37 H 1.08999 * 109.54219 * 63.24822 * 22 20 18 38 38 H 1.08998 * 109.52626 * 297.07828 * 23 22 20 39 39 H 1.08997 * 109.57219 * 176.91625 * 23 22 20 40 40 H 1.09010 * 109.47879 * 182.40920 * 24 23 22 41 41 H 1.08997 * 109.49525 * 62.38084 * 24 23 22 42 42 H 1.08994 * 109.48047 * 178.86076 * 26 25 24 43 43 H 1.09000 * 109.49011 * 58.83044 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7934 -1.2058 5 7 3.2445 -1.5521 -0.7361 6 6 4.0036 -2.4006 -1.4970 7 1 3.7603 -2.5565 -2.5376 8 6 5.0865 -3.0594 -0.9312 9 7 5.3833 -2.8690 0.3369 10 14 6.1225 -4.2162 -1.9694 11 1 6.7134 -3.4659 -3.1064 12 1 7.2094 -4.7899 -1.1360 13 1 5.2678 -5.3130 -2.4909 14 6 3.4632 -1.2486 0.6899 15 6 2.0789 -0.7933 1.2153 16 1 1.4447 -1.6506 1.4409 17 7 2.2214 0.0738 2.3874 18 6 2.1816 -0.4556 3.6262 19 8 2.0328 -1.6506 3.7704 20 6 2.3219 0.4371 4.8322 21 1 3.2843 0.9477 4.7973 22 6 2.2349 -0.4073 6.1071 23 6 2.3005 0.5190 7.3254 24 6 1.1730 1.5505 7.2336 25 8 1.2949 2.2800 6.0108 26 6 1.1935 1.4719 4.8367 27 1 -0.3634 0.4644 0.9168 28 1 -0.3633 0.5617 -0.8606 29 1 -0.3634 -1.0261 -0.0562 30 1 1.3130 -1.4787 -1.5749 31 1 2.3741 -0.1060 -1.9975 32 1 6.1403 -3.3291 0.7322 33 1 4.1930 -0.4465 0.7994 34 1 3.7959 -2.1405 1.2209 35 1 2.3403 1.0296 2.2721 36 1 1.2934 -0.9567 6.1171 37 1 3.0684 -1.1090 6.1373 38 1 3.2624 1.0313 7.3420 39 1 2.1843 -0.0676 8.2367 40 1 1.2407 2.2390 8.0760 41 1 0.2102 1.0401 7.2579 42 1 1.2761 2.1036 3.9524 43 1 0.2311 0.9602 4.8293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079480094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:17 Heat of formation + Delta-G solvation = -93.134666 kcal Electronic energy + Delta-G solvation = -23161.657873 eV Core-core repulsion = 19819.952041 eV Total energy + Delta-G solvation = -3341.705832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43728 -39.93359 -38.92382 -35.68156 -34.61476 -34.33563 -32.39171 -32.10547 -29.46404 -27.41685 -26.08455 -25.68229 -24.84934 -22.54569 -21.66224 -21.42183 -20.64971 -18.94039 -18.30334 -17.51537 -17.24021 -16.92236 -16.74148 -16.05164 -15.67912 -15.63051 -15.10870 -14.64681 -14.59173 -14.39849 -14.27544 -13.92960 -13.88101 -13.48229 -13.36926 -13.05572 -12.82787 -12.60560 -12.56758 -12.26802 -12.14147 -12.03639 -11.88169 -11.84940 -11.66250 -11.42535 -11.36342 -10.87993 -10.77587 -10.48222 -9.98646 -8.91946 -7.79074 -5.25863 1.43411 1.47712 1.54122 1.60897 2.13542 2.48479 2.89941 3.30387 3.55625 3.66029 3.69771 3.78974 3.87007 3.98961 4.03864 4.10103 4.16116 4.28708 4.45143 4.53372 4.61366 4.63716 4.66161 4.72237 4.81642 4.88647 4.93772 5.03416 5.04750 5.08606 5.13899 5.22063 5.28346 5.32304 5.43982 5.48971 5.63810 5.79086 6.17003 6.26325 6.59470 7.05439 7.29425 7.75075 8.37494 9.21293 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.004273 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.012351 B = 6551.220516 C = 7501.947993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.099 0.901 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.243 4.243 7 H 0.086 0.914 8 C -0.070 4.070 9 N -0.950 5.950 10 Si 0.983 3.017 11 H -0.273 1.273 12 H -0.296 1.296 13 H -0.276 1.276 14 C 0.156 3.844 15 C 0.136 3.864 16 H 0.066 0.934 17 N -0.699 5.699 18 C 0.514 3.486 19 O -0.584 6.584 20 C -0.134 4.134 21 H 0.115 0.885 22 C -0.105 4.105 23 C -0.148 4.148 24 C 0.053 3.947 25 O -0.387 6.387 26 C 0.079 3.921 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.244 0.756 33 H -0.008 1.008 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.118 0.882 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 13.096 11.045 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.117 0.883 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.104 0.896 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.810 3.190 11 H -0.199 1.199 12 H -0.222 1.222 13 H -0.202 1.202 14 C 0.029 3.971 15 C 0.029 3.971 16 H 0.085 0.915 17 N -0.350 5.350 18 C 0.302 3.698 19 O -0.464 6.464 20 C -0.155 4.155 21 H 0.133 0.867 22 C -0.143 4.143 23 C -0.186 4.186 24 C -0.024 4.024 25 O -0.306 6.306 26 C 0.001 3.999 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.010 0.990 34 H 0.077 0.923 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.748 12.331 11.133 19.786 hybrid contribution 1.171 -1.059 -0.656 1.710 sum -9.576 11.271 10.477 18.125 Atomic orbital electron populations 1.21696 0.91956 1.01873 1.03145 1.22384 0.97484 0.99065 0.92345 0.88265 1.21612 0.88591 0.93301 0.95764 1.44694 1.32084 1.50822 1.07760 1.19479 1.06622 1.17391 0.93667 0.89630 1.25719 1.00371 1.02526 0.97580 1.70119 1.30111 1.47127 1.12613 0.85088 0.77830 0.78650 0.77391 1.19902 1.22183 1.20210 1.21887 0.92131 0.98187 0.84878 1.22160 0.97109 0.93032 0.84806 0.91535 1.45737 1.73091 1.11524 1.04680 1.21056 0.75017 0.88606 0.85156 1.90706 1.50749 1.18105 1.86815 1.22012 1.03847 0.97221 0.92447 0.86716 1.21405 1.02604 0.97395 0.92936 1.22198 1.00673 0.97749 0.97956 1.22831 0.97435 0.95166 0.86922 1.87944 1.93771 1.34615 1.14259 1.22519 0.95361 0.92364 0.89607 0.91040 0.90314 0.93757 0.95240 0.94894 0.94596 0.99025 0.92274 0.74878 0.92013 0.92627 0.90640 0.88894 0.86573 0.92442 0.86382 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.16 71.98 0.66 -2.42 16 2 C -0.09 -2.92 3.20 -9.60 -0.03 -2.95 16 3 H 0.10 2.64 8.00 -2.39 -0.02 2.62 16 4 C 0.13 5.36 6.84 86.73 0.59 5.95 16 5 N -0.63 -33.30 3.39 -692.00 -2.35 -35.65 16 6 C -0.24 -14.04 10.27 84.03 0.86 -13.17 16 7 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 8 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 9 N -0.95 -59.85 10.09 21.65 0.22 -59.63 16 10 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.16 8.07 5.58 86.86 0.48 8.56 16 15 C 0.14 5.27 2.87 46.39 0.13 5.40 16 16 H 0.07 2.96 7.44 -2.39 -0.02 2.95 16 17 N -0.70 -21.33 5.10 -435.96 -2.22 -23.56 16 18 C 0.51 16.95 7.16 87.66 0.63 17.57 16 19 O -0.58 -25.59 15.61 -3.04 -0.05 -25.64 16 20 C -0.13 -3.15 2.73 -11.45 -0.03 -3.18 16 21 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 22 C -0.11 -2.48 4.62 30.71 0.14 -2.34 16 23 C -0.15 -2.41 6.14 30.69 0.19 -2.22 16 24 C 0.05 0.77 6.84 72.01 0.49 1.27 16 25 O -0.39 -7.27 10.77 -148.98 -1.60 -8.88 16 26 C 0.08 1.44 6.00 72.01 0.43 1.87 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 30 H 0.03 1.18 7.76 -2.39 -0.02 1.16 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.06 3.70 5.87 -2.39 -0.01 3.69 16 35 H 0.41 9.28 8.03 -92.71 -0.74 8.54 16 36 H 0.06 1.57 8.03 -2.39 -0.02 1.55 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.12 1.66 7.64 -2.39 -0.02 1.65 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.81 339.28 1.28 -75.53 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.24 Total: 17.94 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.02 Total: 10.69 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -4.35 Total: -118.83 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.65 Total: -34.52 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -76.81 1.28 -75.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079480094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.606 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds