Wall clock time and date at job start Tue Mar 31 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.54491 * 355.72058 * 4 3 2 6 6 C 1.52992 * 117.50218 * 141.38763 * 4 3 2 7 7 C 1.52999 * 117.49891 * 210.01520 * 4 3 2 8 8 H 1.09004 * 117.49305 * 145.01855 * 7 4 3 9 9 C 1.50696 * 117.50162 * 359.97438 * 7 4 3 10 10 O 1.21288 * 119.99504 * 359.97438 * 9 7 4 11 11 N 1.34767 * 120.00243 * 180.02562 * 9 7 4 12 12 C 1.46496 * 120.00206 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47453 * 180.02562 * 12 11 9 14 14 H 1.08992 * 112.85201 * 43.79860 * 13 12 11 15 15 C 1.53780 * 113.61669 * 175.00260 * 13 12 11 16 16 C 1.53778 * 87.08692 * 139.97858 * 15 13 12 17 17 H 1.09001 * 113.61461 * 220.01963 * 16 15 13 18 18 N 1.46500 * 113.61602 * 89.19372 * 16 15 13 19 19 C 1.36945 * 119.99722 * 155.00437 * 18 16 15 20 20 H 1.07997 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99666 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00053 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47558 * 59.99282 * 23 21 19 25 25 H 1.48500 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46686 * 299.99224 * 23 21 19 27 27 C 1.53785 * 113.60962 * 272.49402 * 13 12 11 28 28 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 33 33 H 1.08998 * 117.50128 * 214.97705 * 6 4 3 34 34 H 1.09007 * 117.49747 * 0.02562 * 6 4 3 35 35 H 0.97007 * 120.00323 * 359.97438 * 11 9 7 36 36 H 1.09007 * 109.46959 * 299.99922 * 12 11 9 37 37 H 1.09003 * 109.47481 * 59.99258 * 12 11 9 38 38 H 1.09007 * 113.61020 * 254.52427 * 15 13 12 39 39 H 1.08999 * 113.61569 * 25.42344 * 15 13 12 40 40 H 0.96999 * 120.00100 * 335.00242 * 18 16 15 41 41 H 0.97007 * 119.99803 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.61799 * 334.56395 * 27 13 12 43 43 H 1.09002 * 113.61657 * 105.47066 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9769 0.5197 0.0724 6 6 4.0510 2.5732 -0.8475 7 6 4.0425 2.6874 0.6782 8 1 4.9913 2.5543 1.1981 9 6 3.0967 3.6848 1.2958 10 8 1.8994 3.4985 1.2425 11 7 3.5811 4.7843 1.9062 12 6 2.6616 5.7537 2.5070 13 6 3.4629 6.8994 3.1286 14 1 4.2732 7.2458 2.4873 15 6 2.5862 8.0353 3.6815 16 6 3.5629 8.1062 4.8672 17 1 3.0727 8.2644 5.8278 18 7 4.6889 9.0170 4.6463 19 6 5.3331 9.5811 5.7150 20 1 5.0113 9.3542 6.7206 21 6 6.3997 10.4444 5.5057 22 7 6.7922 10.7204 4.2801 23 14 7.2789 11.2133 6.9635 24 1 7.8473 10.1418 7.8202 25 1 8.3733 12.0903 6.4752 26 1 6.3144 12.0197 7.7539 27 6 3.8948 6.6323 4.5802 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 5.0053 2.3652 -1.3313 34 1 3.3723 3.2197 -1.4040 35 1 4.5387 4.9336 1.9485 36 1 1.9983 6.1501 1.7382 37 1 2.0698 5.2627 3.2796 38 1 2.5884 8.9307 3.0599 39 1 1.5823 7.7156 3.9612 40 1 4.9782 9.2204 3.7430 41 1 7.5379 11.3235 4.1338 42 1 3.2487 5.9289 5.1057 43 1 4.9535 6.3949 4.6842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086315000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:32 Heat of formation + Delta-G solvation = -46.945631 kcal Electronic energy + Delta-G solvation = -21646.544345 eV Core-core repulsion = 18306.841420 eV Total energy + Delta-G solvation = -3339.702925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07457 -40.06763 -38.84680 -36.15793 -35.83567 -34.88765 -32.09092 -31.63136 -29.01372 -26.44446 -25.93688 -24.76912 -23.74007 -23.08790 -22.83166 -21.14381 -19.81846 -19.32809 -18.66276 -17.26618 -16.92825 -16.67082 -16.41102 -16.27148 -16.03052 -15.67445 -15.42395 -14.86073 -14.63836 -14.59431 -13.89973 -13.74925 -13.54010 -13.30090 -13.26090 -13.00971 -12.91893 -12.91511 -12.61123 -12.20097 -12.09477 -12.07454 -11.86387 -11.53313 -11.47932 -11.40090 -10.98792 -10.86389 -10.66135 -10.03402 -9.98035 -9.00225 -7.95077 -5.23604 1.48213 1.50846 1.56943 1.58658 2.23042 2.56082 2.62590 2.90862 3.37132 3.69490 3.74268 3.79666 3.84992 3.90580 3.99310 4.15253 4.20960 4.21117 4.32008 4.40211 4.42535 4.50645 4.51545 4.72347 4.76074 4.84085 4.90633 4.91800 4.98332 5.03412 5.04365 5.11198 5.27104 5.30004 5.35906 5.50511 5.58080 5.65919 6.28322 6.40860 6.64621 7.33312 7.36150 8.10170 8.32957 9.27940 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.002572 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.656023 B =10884.352013 C =11255.367064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.042 3.958 5 H 0.151 0.849 6 C -0.150 4.150 7 C -0.207 4.207 8 H 0.157 0.843 9 C 0.529 3.471 10 O -0.566 6.566 11 N -0.720 5.720 12 C 0.143 3.857 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.136 4.136 16 C 0.145 3.855 17 H 0.060 0.940 18 N -0.719 5.719 19 C -0.244 4.244 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.279 1.279 27 C -0.152 4.152 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 -22.412 -9.657 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.282 6.282 4 C -0.016 4.016 5 H 0.168 0.832 6 C -0.187 4.187 7 C -0.228 4.228 8 H 0.174 0.826 9 C 0.316 3.684 10 O -0.444 6.444 11 N -0.372 5.372 12 C 0.019 3.981 13 C -0.120 4.120 14 H 0.100 0.900 15 C -0.175 4.175 16 C 0.035 3.965 17 H 0.078 0.922 18 N -0.358 5.358 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.205 1.205 27 C -0.192 4.192 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.246 0.754 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.561 -22.306 -9.494 25.394 hybrid contribution 1.229 0.902 0.451 1.590 sum -6.332 -21.404 -9.042 24.083 Atomic orbital electron populations 1.21737 0.93824 1.03109 1.01987 1.22729 0.95881 0.83018 1.01076 1.88138 1.18887 1.27427 1.93774 1.22938 0.82849 0.94210 1.01649 0.83202 1.23492 1.03944 1.01432 0.89869 1.22885 1.01828 0.99783 0.98266 0.82553 1.20176 0.88652 0.81774 0.77754 1.90727 1.17548 1.76613 1.59513 1.46008 1.11186 1.22489 1.57488 1.21217 0.91849 0.88386 0.96659 1.22482 0.98449 0.95037 0.96010 0.89993 1.23356 0.98772 0.97539 0.97851 1.21371 0.88578 0.89766 0.96820 0.92222 1.42292 1.35363 1.52513 1.05598 1.19638 1.09543 1.19834 0.88565 0.90586 1.25563 1.00543 1.01689 0.98970 1.69808 1.30531 1.41030 1.20551 0.85208 0.77798 0.78026 0.78700 1.20368 1.22229 1.20484 1.23699 1.00633 0.99145 0.95758 0.93696 0.88679 0.92743 0.92569 0.91428 0.83720 0.89852 0.75370 0.92583 0.91925 0.92396 0.87845 0.79348 0.94000 0.89220 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.36 -8.88 8.48 -127.82 -1.08 -9.97 16 4 C 0.04 0.73 6.40 30.59 0.20 0.92 16 5 H 0.15 1.44 7.93 -2.39 -0.02 1.42 16 6 C -0.15 -2.31 10.18 30.59 0.31 -2.00 16 7 C -0.21 -3.79 6.19 -11.54 -0.07 -3.86 16 8 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.53 14.43 7.61 87.66 0.67 15.10 16 10 O -0.57 -20.34 14.92 18.11 0.27 -20.07 16 11 N -0.72 -17.89 5.56 -463.07 -2.57 -20.47 16 12 C 0.14 3.89 5.51 86.38 0.48 4.37 16 13 C -0.10 -2.99 3.63 -10.27 -0.04 -3.03 16 14 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 15 C -0.14 -4.30 7.39 31.12 0.23 -4.07 16 16 C 0.14 5.60 4.56 45.52 0.21 5.81 16 17 H 0.06 2.31 8.10 -2.39 -0.02 2.30 16 18 N -0.72 -35.80 5.31 -320.43 -1.70 -37.51 16 19 C -0.24 -13.44 9.97 84.03 0.84 -12.61 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 23 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C -0.15 -4.93 7.43 31.13 0.23 -4.70 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.41 8.58 8.47 -92.70 -0.79 7.80 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.06 1.76 7.85 -2.39 -0.02 1.74 16 38 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.10 2.74 8.10 -2.39 -0.02 2.73 16 40 H 0.37 19.92 7.90 -92.71 -0.73 19.19 16 41 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.09 2.54 7.90 -2.39 -0.02 2.52 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.70 359.48 1.43 -71.28 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.52 Total: 35.68 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 4.72 Total: -8.32 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.99 Total: -116.35 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.81 Total: -30.04 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.70 1.43 -71.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086315000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.330 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds