Wall clock time and date at job start Tue Mar 31 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87222 * 2 1 4 4 O 1.43751 * 109.87945 * 121.15623 * 2 1 3 5 5 C 1.44379 * 106.97359 * 92.91263 * 4 2 1 6 6 C 1.54995 * 103.49054 * 40.06318 * 5 4 2 7 7 C 1.54093 * 109.88185 * 238.98843 * 2 1 3 8 8 H 1.08999 * 110.49015 * 1.28480 * 7 2 1 9 9 C 1.50707 * 110.49016 * 123.79448 * 7 2 1 10 10 O 1.21281 * 119.99719 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99882 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99619 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47135 * 179.97438 * 12 11 9 14 14 H 1.08999 * 112.84544 * 43.80702 * 13 12 11 15 15 C 1.53777 * 113.61718 * 175.00163 * 13 12 11 16 16 C 1.53776 * 87.08238 * 139.98267 * 15 13 12 17 17 H 1.09000 * 113.61571 * 220.02076 * 16 15 13 18 18 N 1.46501 * 113.61044 * 89.11887 * 16 15 13 19 19 C 1.36944 * 119.99646 * 155.00402 * 18 16 15 20 20 H 1.07992 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99439 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00265 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99397 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47206 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46776 * 120.00228 * 23 21 19 26 26 H 1.48504 * 109.47108 * 239.99874 * 23 21 19 27 27 C 1.53780 * 113.61511 * 272.50242 * 13 12 11 28 28 H 1.09002 * 109.47153 * 181.00966 * 1 2 3 29 29 H 1.09001 * 109.46832 * 61.01157 * 1 2 3 30 30 H 1.09004 * 109.47261 * 301.01138 * 1 2 3 31 31 H 1.09001 * 110.61656 * 281.56312 * 5 4 2 32 32 H 1.08995 * 110.75266 * 158.62633 * 5 4 2 33 33 H 1.09009 * 110.90467 * 204.78229 * 6 5 4 34 34 H 1.08988 * 110.93885 * 81.19010 * 6 5 4 35 35 H 0.96998 * 120.00675 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47339 * 300.00119 * 12 11 9 37 37 H 1.09007 * 109.46971 * 60.00786 * 12 11 9 38 38 H 1.08997 * 113.61564 * 254.53794 * 15 13 12 39 39 H 1.09009 * 113.61094 * 25.34790 * 15 13 12 40 40 H 0.96995 * 120.00093 * 334.99778 * 18 16 15 41 41 H 0.96997 * 119.99643 * 180.02562 * 22 21 19 42 42 H 1.08996 * 113.61888 * 334.56339 * 27 13 12 43 43 H 1.08998 * 113.61570 * 105.47170 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6994 1.1569 5 6 2.2281 -2.0723 0.7621 6 6 2.8325 -1.9515 -0.6600 7 6 2.0540 -0.7466 -1.2420 8 1 1.2238 -1.0907 -1.8588 9 6 2.9718 0.1409 -2.0427 10 8 3.1992 1.2722 -1.6695 11 7 3.5407 -0.3230 -3.1730 12 6 4.4325 0.5400 -3.9517 13 6 4.9397 -0.2236 -5.1767 14 1 4.1534 -0.7862 -5.6801 15 6 5.7897 0.6340 -6.1289 16 6 6.7020 -0.5929 -6.2932 17 1 7.7635 -0.3470 -6.3218 18 7 6.2941 -1.4861 -7.3804 19 6 7.2185 -2.2960 -7.9844 20 1 8.2482 -2.2759 -7.6597 21 6 6.8318 -3.1427 -9.0142 22 7 5.5767 -3.1676 -9.4097 23 14 8.0929 -4.2469 -9.8388 24 1 9.4231 -4.0307 -9.2151 25 1 7.6920 -5.6670 -9.6714 26 1 8.1661 -3.9204 -11.2856 27 6 6.2116 -1.0450 -4.9075 28 1 -0.3633 -1.0275 0.0181 29 1 -0.3633 0.4981 -0.8989 30 1 -0.3634 0.5295 0.8808 31 1 1.2814 -2.6117 0.7323 32 1 2.9284 -2.5655 1.4362 33 1 2.6432 -2.8542 -1.2411 34 1 3.9003 -1.7385 -0.6125 35 1 3.3592 -1.2279 -3.4714 36 1 3.8882 1.4269 -4.2757 37 1 5.2796 0.8388 -3.3340 38 1 5.2692 0.9169 -7.0439 39 1 6.2752 1.4786 -5.6398 40 1 5.3692 -1.5039 -7.6722 41 1 5.3065 -3.7595 -10.1290 42 1 6.8137 -0.6604 -4.0844 43 1 6.0318 -2.1177 -4.8366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086515149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:28 Heat of formation + Delta-G solvation = -62.157260 kcal Electronic energy + Delta-G solvation = -22121.369237 eV Core-core repulsion = 18781.006686 eV Total energy + Delta-G solvation = -3340.362551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71085 -39.08973 -38.24722 -34.74858 -33.32673 -32.68761 -31.50433 -30.19619 -27.96989 -26.51822 -25.10249 -23.79586 -22.62518 -21.99119 -21.48271 -20.17013 -18.48796 -17.80254 -17.28887 -16.64803 -16.05828 -15.90937 -15.12752 -14.98292 -14.69102 -14.34965 -14.06515 -13.68511 -13.61054 -13.28981 -13.03577 -12.93417 -12.45053 -12.28490 -12.13811 -11.95683 -11.73191 -11.45783 -11.25541 -11.15583 -11.07738 -10.89548 -10.53454 -10.21595 -10.14350 -9.92496 -9.77011 -9.73881 -9.49860 -9.06207 -8.93019 -7.04757 -5.85381 -3.14443 2.49990 3.06513 3.38210 3.44468 3.46423 3.58114 4.16377 4.39159 4.47335 4.51804 4.79680 4.82349 4.95817 5.00401 5.05469 5.10902 5.19545 5.23627 5.26102 5.39432 5.41042 5.50692 5.57782 5.64083 5.67258 5.81114 5.82832 5.91237 5.94560 6.06350 6.17092 6.32897 6.36781 6.54675 6.62879 6.69508 6.85325 6.99530 7.42795 7.65499 8.11268 8.33864 9.44707 10.01936 10.36145 11.37123 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.002911 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.754713 B = 9615.024627 C =10062.048054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.117 0.883 4 O -0.369 6.369 5 C 0.046 3.954 6 C -0.146 4.146 7 C -0.143 4.143 8 H 0.110 0.890 9 C 0.520 3.480 10 O -0.542 6.542 11 N -0.720 5.720 12 C 0.130 3.870 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.168 4.168 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 3.600 17.401 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.135 0.865 4 O -0.288 6.288 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.165 4.165 8 H 0.128 0.872 9 C 0.306 3.694 10 O -0.419 6.419 11 N -0.371 5.371 12 C 0.007 3.993 13 C -0.138 4.138 14 H 0.111 0.889 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.209 4.209 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.553 4.409 17.760 20.199 hybrid contribution 0.067 -1.298 -1.036 1.662 sum -8.486 3.111 16.724 19.010 Atomic orbital electron populations 1.22282 0.95216 1.02375 1.02811 1.22787 0.93794 0.98339 0.82843 0.86508 1.88942 1.86103 1.20537 1.33184 1.23542 0.99891 0.84802 0.94808 1.23153 1.01050 0.97163 0.96983 1.22773 0.99005 0.96516 0.98211 0.87162 1.20242 0.80695 0.87590 0.80895 1.90679 1.62273 1.19705 1.69252 1.46049 1.48247 1.17873 1.24912 1.21511 0.92798 0.93103 0.91913 1.22710 0.97507 0.98610 0.94999 0.88911 1.23447 0.98726 0.97984 0.98625 1.21051 0.96180 0.89514 0.87747 0.91945 1.42181 1.09727 1.45062 1.37486 1.19339 0.91113 1.14603 1.12236 0.90927 1.24767 0.96371 1.00400 0.99363 1.69666 1.15127 1.41783 1.31484 0.86101 0.80444 0.80327 0.79218 1.20474 1.21829 1.21803 1.23890 0.96326 0.99950 1.00777 0.92371 0.91417 0.91536 0.91950 0.88672 0.89112 0.89797 0.76289 0.91784 0.91539 0.91316 0.90444 0.78126 0.93475 0.91406 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.30 37.16 0.35 -1.03 16 2 C 0.08 0.84 3.70 -26.16 -0.10 0.74 16 3 H 0.12 1.48 6.44 -51.93 -0.33 1.14 16 4 O -0.37 -4.19 11.19 -35.23 -0.39 -4.58 16 5 C 0.05 0.37 7.66 38.21 0.29 0.67 16 6 C -0.15 -1.16 6.69 -24.72 -0.17 -1.33 16 7 C -0.14 -1.34 3.06 -90.24 -0.28 -1.61 16 8 H 0.11 0.81 7.70 -51.93 -0.40 0.41 16 9 C 0.52 6.46 7.03 -10.98 -0.08 6.38 16 10 O -0.54 -8.73 15.26 5.56 0.08 -8.65 16 11 N -0.72 -8.30 5.55 -60.29 -0.33 -8.63 16 12 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 13 C -0.12 -1.72 3.63 -89.81 -0.33 -2.04 16 14 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.15 -2.31 7.39 -25.92 -0.19 -2.50 16 16 C 0.17 3.18 4.56 -67.12 -0.31 2.88 16 17 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 18 N -0.71 -17.03 5.31 -52.64 -0.28 -17.31 16 19 C -0.24 -6.54 9.97 -15.05 -0.15 -6.69 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C -0.17 -2.70 7.43 -25.92 -0.19 -2.90 16 28 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.77 7.87 -51.94 -0.41 0.36 16 35 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.06 8.10 -51.92 -0.42 0.63 16 40 H 0.38 9.80 7.90 -40.82 -0.32 9.48 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -31.61 350.49 -8.44 -40.05 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.24 Total: 9.89 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.26 Total: -6.23 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.11 Total: -52.61 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.31 Total: -13.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.61 -8.44 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086515149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.103 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds