Wall clock time and date at job start Tue Mar 31 2020 02:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46812 * 2 1 4 4 C 1.42908 * 114.00094 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46582 * 329.99847 * 4 3 2 6 6 C 1.52993 * 109.47092 * 89.99608 * 4 3 2 7 7 C 1.50696 * 109.47250 * 210.00448 * 4 3 2 8 8 O 1.21278 * 120.00059 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00027 * 179.97438 * 7 4 3 10 10 C 1.46506 * 120.00038 * 179.97438 * 9 7 4 11 11 H 1.09001 * 110.55667 * 32.92674 * 10 9 7 12 12 C 1.54854 * 110.62671 * 155.82453 * 10 9 7 13 13 C 1.55836 * 103.44532 * 118.49209 * 12 10 9 14 14 H 1.09007 * 115.55862 * 159.56632 * 13 12 10 15 15 C 1.55854 * 105.06495 * 288.17420 * 13 12 10 16 16 C 1.54850 * 103.44183 * 71.82759 * 15 13 12 17 17 C 1.55844 * 110.62748 * 270.02218 * 10 9 7 18 18 H 1.08998 * 115.55697 * 81.94853 * 17 10 9 19 19 N 1.50232 * 101.05379 * 32.93952 * 13 12 10 20 20 C 1.36938 * 130.84109 * 126.02902 * 19 13 12 21 21 H 1.08001 * 119.99628 * 180.02562 * 20 19 13 22 22 C 1.38812 * 119.99854 * 0.02562 * 20 19 13 23 23 N 1.31614 * 119.99937 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99661 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47214 * 60.00192 * 24 22 20 26 26 H 1.48504 * 109.46807 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47434 * 299.99981 * 24 22 20 28 28 H 1.08997 * 109.47414 * 59.99880 * 1 2 3 29 29 H 1.09001 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47087 * 299.99600 * 1 2 3 31 31 H 1.08998 * 109.47361 * 240.00670 * 2 1 3 32 32 H 1.08997 * 109.47414 * 120.00120 * 2 1 3 33 33 H 1.09007 * 109.47269 * 179.97438 * 6 4 3 34 34 H 1.08992 * 109.47797 * 300.00039 * 6 4 3 35 35 H 1.09001 * 109.47212 * 60.00625 * 6 4 3 36 36 H 0.96995 * 120.00342 * 359.97438 * 9 7 4 37 37 H 1.09004 * 110.62352 * 236.98448 * 12 10 9 38 38 H 1.09004 * 110.62727 * 359.97438 * 12 10 9 39 39 H 1.09001 * 110.62247 * 190.31837 * 15 13 12 40 40 H 1.08994 * 110.62384 * 313.17755 * 15 13 12 41 41 H 1.08997 * 110.62734 * 118.49160 * 16 15 13 42 42 H 1.09007 * 110.62172 * 241.35033 * 16 15 13 43 43 H 0.96998 * 120.00010 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.8635 0.6017 0.5130 6 6 3.9386 1.5007 -1.4432 7 6 3.8347 2.7264 0.7099 8 8 2.9862 3.4601 1.1710 9 7 5.1388 3.0434 0.8330 10 6 5.5314 4.2746 1.5233 11 1 4.8311 4.5028 2.3268 12 6 6.9737 4.1549 2.0742 13 6 7.7420 5.2861 1.3267 14 1 8.6697 5.6140 1.7960 15 6 7.8727 4.7842 -0.1430 16 6 6.4305 4.9039 -0.6939 17 6 5.6206 5.4627 0.5186 18 1 4.6738 5.9448 0.2753 19 7 6.6626 6.3210 1.1827 20 6 6.6335 7.6411 1.5457 21 1 5.7507 8.2338 1.3564 22 6 7.7386 8.2174 2.1569 23 7 8.8141 7.4949 2.3880 24 14 7.6990 10.0183 2.6513 25 1 6.5960 10.2416 3.6203 26 1 8.9925 10.3873 3.2807 27 1 7.4770 10.8577 1.4466 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.0252 1.5873 -1.4437 34 1 3.6466 0.5849 -1.9571 35 1 3.5060 2.3593 -1.9568 36 1 5.8175 2.4565 0.4646 37 1 6.9890 4.3266 3.1505 38 1 7.3967 3.1794 1.8342 39 1 8.5535 5.4217 -0.7072 40 1 8.2106 3.7482 -0.1663 41 1 6.3959 5.6006 -1.5314 42 1 6.0514 3.9266 -0.9930 43 1 9.5865 7.8977 2.8147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108970004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:57 Heat of formation + Delta-G solvation = -37.590084 kcal Electronic energy + Delta-G solvation = -23296.563460 eV Core-core repulsion = 19957.266222 eV Total energy + Delta-G solvation = -3339.297238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15603 -38.83392 -37.42852 -33.97984 -32.65829 -32.12892 -30.31966 -29.20869 -28.95192 -27.50075 -24.72313 -23.90978 -22.86015 -21.39226 -20.42013 -19.48164 -18.57832 -17.33059 -17.11407 -16.70114 -15.87942 -15.39927 -14.91566 -14.74497 -14.44042 -14.05614 -13.83970 -13.30496 -13.19031 -12.73520 -12.49234 -12.26826 -12.20752 -12.08810 -11.73573 -11.55445 -11.48358 -11.19574 -11.02958 -10.90896 -10.88217 -10.81360 -10.21652 -10.10217 -9.98136 -9.84065 -9.42065 -9.31731 -9.16775 -8.91687 -8.48601 -6.90182 -5.71523 -3.09198 2.83672 3.02792 3.42158 3.45892 3.47214 3.90147 4.46634 4.65707 4.77424 4.86379 4.93370 5.04236 5.12811 5.20590 5.28718 5.39525 5.49817 5.54751 5.60035 5.69644 5.81606 5.85362 5.92375 5.95086 5.97716 6.07717 6.12193 6.31293 6.34289 6.53906 6.60454 6.69262 6.82516 6.91342 6.98876 7.04338 7.28340 7.53657 7.75325 7.86390 8.16505 8.53370 9.11930 9.74230 10.54559 11.38313 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.003897 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.312006 B = 7183.461220 C = 7552.185457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.508 3.492 8 O -0.522 6.522 9 N -0.710 5.710 10 C 0.128 3.872 11 H 0.083 0.917 12 C -0.141 4.141 13 C 0.157 3.843 14 H 0.153 0.847 15 C -0.137 4.137 16 C -0.130 4.130 17 C 0.128 3.872 18 H 0.086 0.914 19 N -0.589 5.589 20 C -0.211 4.211 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.925 5.925 24 Si 0.917 3.083 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -17.145 -6.314 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.009 3.991 5 H 0.100 0.900 6 C -0.228 4.228 7 C 0.293 3.707 8 O -0.397 6.397 9 N -0.363 5.363 10 C 0.022 3.978 11 H 0.102 0.898 12 C -0.181 4.181 13 C 0.050 3.950 14 H 0.170 0.830 15 C -0.177 4.177 16 C -0.170 4.170 17 C 0.019 3.981 18 H 0.104 0.896 19 N -0.310 5.310 20 C -0.339 4.339 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.573 5.573 24 Si 0.747 3.253 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.507 -16.136 -5.822 18.724 hybrid contribution 0.453 0.275 -0.009 0.530 sum -7.054 -15.861 -5.832 18.312 Atomic orbital electron populations 1.21724 0.93544 1.02042 1.03482 1.22566 0.95920 0.83830 0.99893 1.88074 1.18603 1.25956 1.94918 1.21916 0.83521 0.96964 0.96684 0.89953 1.22235 1.01762 1.03556 0.95222 1.20282 0.83145 0.87014 0.80309 1.90719 1.50162 1.51417 1.47422 1.46185 1.06283 1.25307 1.58532 1.22663 0.96650 0.82992 0.95487 0.89843 1.23305 0.94428 0.99440 1.00933 1.23696 0.95318 0.84761 0.91245 0.83019 1.23054 0.95729 0.98366 1.00539 1.22963 0.96812 0.98918 0.98315 1.23281 0.93016 0.90005 0.91788 0.89607 1.46494 1.10728 1.06073 1.67663 1.19033 0.99523 0.83618 1.31698 0.90349 1.24690 0.96088 0.98378 1.01557 1.69449 1.04650 1.34663 1.48514 0.86109 0.76708 0.84186 0.78259 1.21198 1.21598 1.21257 0.91768 0.91170 0.91612 0.93365 0.93368 0.90857 0.91558 0.90927 0.77158 0.91603 0.92745 0.92662 0.93674 0.93076 0.93106 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.86 9.52 -55.14 -0.52 -5.39 16 4 C 0.07 0.84 3.14 -27.89 -0.09 0.75 16 5 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 6 C -0.17 -1.61 9.42 37.15 0.35 -1.26 16 7 C 0.51 8.13 7.23 -10.99 -0.08 8.05 16 8 O -0.52 -10.97 16.16 -14.35 -0.23 -11.20 16 9 N -0.71 -10.50 3.60 -51.40 -0.19 -10.69 16 10 C 0.13 2.41 3.13 -65.43 -0.20 2.21 16 11 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 12 C -0.14 -2.66 6.20 -24.24 -0.15 -2.81 16 13 C 0.16 3.50 4.69 -62.80 -0.29 3.20 16 14 H 0.15 3.88 5.58 -51.93 -0.29 3.59 16 15 C -0.14 -2.61 6.44 -24.23 -0.16 -2.76 16 16 C -0.13 -2.38 6.31 -24.07 -0.15 -2.53 16 17 C 0.13 2.71 5.39 -62.51 -0.34 2.37 16 18 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 19 N -0.59 -14.74 2.98 -145.47 -0.43 -15.17 16 20 C -0.21 -5.85 10.58 -15.06 -0.16 -6.01 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.92 -26.22 10.48 55.49 0.58 -25.64 16 24 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 32 H 0.05 0.40 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.59 7.57 -51.93 -0.39 0.19 16 34 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.39 4.61 7.33 -40.82 -0.30 4.32 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.85 7.39 -51.93 -0.38 0.46 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -32.37 340.95 -8.49 -40.86 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.07 Total: 4.32 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.74 Total: 0.65 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.04 Total: -51.51 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.76 Total: -16.59 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.37 -8.49 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108970004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.274 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds