Wall clock time and date at job start Tue Mar 31 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99746 * 2 1 4 4 C 1.53000 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46757 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.46955 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47141 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99914 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99975 * 180.02562 * 9 7 6 11 11 H 1.09003 * 115.49040 * 9.61405 * 10 9 7 12 12 C 1.57271 * 116.89822 * 223.09583 * 10 9 7 13 13 H 1.09006 * 120.67576 * 3.42902 * 12 10 9 14 14 C 1.54386 * 118.10824 * 161.54142 * 12 10 9 15 15 N 1.48146 * 104.71862 * 86.05466 * 14 12 10 16 16 C 1.36934 * 127.83756 * 140.35768 * 15 14 12 17 17 H 1.07999 * 119.99882 * 195.61312 * 16 15 14 18 18 C 1.38816 * 120.00098 * 15.61148 * 16 15 14 19 19 N 1.31612 * 120.00108 * 9.10877 * 18 16 15 20 20 Si 1.86803 * 119.99782 * 189.10834 * 18 16 15 21 21 H 1.48496 * 109.47148 * 90.00143 * 20 18 16 22 22 H 1.48501 * 109.46707 * 210.00271 * 20 18 16 23 23 H 1.48502 * 109.47337 * 329.99715 * 20 18 16 24 24 C 1.48143 * 104.32403 * 320.35279 * 15 14 12 25 25 C 1.52994 * 117.44266 * 155.00215 * 10 9 7 26 26 H 1.08997 * 119.54403 * 354.27965 * 25 10 9 27 27 H 1.09006 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47466 * 299.99627 * 1 2 3 29 29 H 1.09002 * 109.46936 * 60.00327 * 1 2 3 30 30 H 1.09002 * 109.46731 * 59.99543 * 3 2 1 31 31 H 1.08999 * 109.47133 * 299.99765 * 3 2 1 32 32 H 1.08990 * 109.47224 * 60.00288 * 4 3 2 33 33 H 1.08998 * 109.47524 * 299.99477 * 4 3 2 34 34 H 1.09002 * 109.46994 * 59.99717 * 5 4 3 35 35 H 1.08999 * 109.47005 * 299.99856 * 5 4 3 36 36 H 1.09002 * 109.47545 * 59.99999 * 6 5 4 37 37 H 1.09005 * 109.47449 * 299.99959 * 6 5 4 38 38 H 0.96999 * 119.99987 * 0.02562 * 9 7 6 39 39 H 1.09003 * 110.40937 * 327.20591 * 14 12 10 40 40 H 1.09006 * 110.40453 * 204.89346 * 14 12 10 41 41 H 0.96998 * 120.00174 * 179.97438 * 19 18 16 42 42 H 1.08994 * 110.40818 * 158.37311 * 24 15 14 43 43 H 1.09000 * 110.40483 * 280.80198 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5826 0.0013 6 6 5.6828 2.4618 0.0013 7 6 6.2957 3.8386 0.0013 8 8 5.5828 4.8198 0.0018 9 7 7.6361 3.9795 0.0018 10 6 8.2319 5.3179 0.0024 11 1 7.5364 6.1410 0.1667 12 6 9.4572 5.5517 -0.9554 13 1 9.7987 4.7618 -1.6245 14 6 9.8335 7.0055 -1.3136 15 7 10.7244 7.4454 -0.2148 16 6 11.8552 8.2122 -0.3062 17 1 12.5480 8.2535 0.5213 18 6 12.1112 8.9365 -1.4624 19 7 11.1892 9.0319 -2.3968 20 14 13.7642 9.7757 -1.6921 21 1 14.7034 8.8432 -2.3655 22 1 13.5903 10.9916 -2.5268 23 1 14.3130 10.1596 -0.3667 24 6 10.1143 6.8677 1.0053 25 6 9.6427 5.4615 0.5767 26 1 10.1212 4.6028 1.0476 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6884 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6438 -0.8890 33 1 3.8568 0.6441 0.8909 34 1 3.8355 3.1233 0.8913 35 1 3.8364 3.1237 -0.8887 36 1 6.0046 1.9213 -0.8889 37 1 6.0045 1.9205 0.8911 38 1 8.2063 3.1948 0.0018 39 1 8.9412 7.6304 -1.3529 40 1 10.3613 7.0376 -2.2668 41 1 11.3679 9.5383 -3.2046 42 1 10.8545 6.7939 1.8020 43 1 9.2660 7.4711 1.3282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114013375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:19 Heat of formation + Delta-G solvation = -37.253197 kcal Electronic energy + Delta-G solvation = -21264.241906 eV Core-core repulsion = 17924.959277 eV Total energy + Delta-G solvation = -3339.282629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81084 -38.42053 -38.13161 -35.01335 -34.39629 -32.63350 -30.58913 -29.75169 -27.15340 -26.93320 -25.66355 -24.22751 -22.02200 -21.29182 -20.48901 -19.97158 -19.21983 -16.98653 -16.84688 -16.68654 -16.65581 -16.14457 -15.67767 -15.31159 -14.72534 -14.30282 -14.08192 -13.62862 -13.24348 -13.00727 -12.84314 -12.73644 -12.24068 -11.95550 -11.84808 -11.76613 -11.48521 -11.39845 -11.26507 -10.99603 -10.92202 -10.83609 -10.39683 -10.19388 -10.16041 -10.02608 -9.78566 -9.72641 -9.18475 -8.74580 -8.23896 -6.87279 -5.79792 -3.14506 2.65203 3.07776 3.38025 3.43015 3.45425 3.46183 4.25203 4.45601 4.55727 4.61172 4.67244 4.91529 4.92534 5.01116 5.04849 5.09292 5.10675 5.26844 5.35653 5.38460 5.40827 5.43454 5.46323 5.58346 5.62430 5.82502 5.89282 5.95273 6.07236 6.17835 6.26342 6.52645 6.68143 6.78780 6.81480 6.89128 7.36824 7.54073 7.59891 7.71637 8.20362 8.30690 9.10566 9.73235 10.50381 11.34445 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.062350 B = 0.002204 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.967335 B =12698.247579 C =12871.054448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.512 3.488 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.093 3.907 11 H 0.133 0.867 12 C -0.181 4.181 13 H 0.104 0.896 14 C 0.184 3.816 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.155 3.845 25 C -0.180 4.180 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.051 0.949 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.379 -18.154 4.744 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.178 4.178 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.347 5.347 10 C -0.013 4.013 11 H 0.151 0.849 12 C -0.203 4.203 13 H 0.121 0.879 14 C 0.058 3.942 15 N -0.317 5.317 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.560 5.560 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.028 3.972 25 C -0.201 4.201 26 H 0.119 0.881 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.639 -17.404 4.596 23.846 hybrid contribution 1.015 0.135 -0.177 1.039 sum -14.624 -17.269 4.419 23.057 Atomic orbital electron populations 1.22736 0.81022 1.02694 1.00061 1.87858 1.19750 1.28370 1.95469 1.22576 0.94222 0.84422 1.00495 1.21534 0.93028 0.97641 1.03405 1.21237 0.92848 0.95878 1.04061 1.21642 0.96901 0.94722 1.04549 1.20663 0.82009 0.91634 0.75785 1.90712 1.60870 1.40845 1.49255 1.45421 1.06585 1.08357 1.74386 1.22551 0.89461 0.85265 1.04004 0.84947 1.25464 0.99848 1.02303 0.92691 0.87850 1.21054 0.93104 0.85717 0.94332 1.45183 1.27442 1.58746 1.00301 1.18999 0.95787 1.19431 1.01408 0.90510 1.24914 0.98346 0.99017 0.98006 1.69899 1.32126 1.44673 1.09347 0.86098 0.83096 0.78705 0.77721 1.21519 1.21634 1.20524 1.21131 0.95695 0.89335 0.91053 1.24354 0.96847 1.00656 0.98236 0.88147 0.89680 0.94055 0.94040 0.93145 0.93100 0.90979 0.91025 0.90879 0.90816 0.88752 0.88815 0.76782 0.95645 0.89115 0.93508 0.93005 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.68 10.70 -35.23 -0.38 -4.06 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.12 -0.90 5.58 -26.73 -0.15 -1.05 16 5 C -0.10 -0.90 4.50 -26.73 -0.12 -1.02 16 6 C -0.14 -1.18 5.70 -27.89 -0.16 -1.34 16 7 C 0.51 6.80 7.83 -10.98 -0.09 6.71 16 8 O -0.54 -9.53 15.55 5.55 0.09 -9.45 16 9 N -0.70 -9.08 5.57 -51.56 -0.29 -9.36 16 10 C 0.09 1.57 6.19 -65.61 -0.41 1.16 16 11 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 12 C -0.18 -3.46 7.26 -86.74 -0.63 -4.09 16 13 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 14 C 0.18 4.48 5.72 -2.41 -0.01 4.47 16 15 N -0.59 -15.31 3.38 -168.86 -0.57 -15.88 16 16 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 17 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 19 N -0.91 -26.95 10.86 55.49 0.60 -26.35 16 20 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 3.27 7.03 -2.41 -0.02 3.25 16 25 C -0.18 -3.16 6.91 -89.06 -0.62 -3.78 16 26 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 3.92 8.83 -40.82 -0.36 3.56 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -33.11 355.46 -8.72 -41.83 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.39 Total: 1.43 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.11 Total: -0.45 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.25 Total: -51.59 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.29 Total: -13.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.11 -8.72 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114013375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.578 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds