Wall clock time and date at job start Tue Mar 31 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48498 * 109.46744 * 270.00023 * 3 2 1 5 5 H 1.48498 * 109.47401 * 29.99961 * 3 2 1 6 6 H 1.48504 * 109.47173 * 149.99998 * 3 2 1 7 7 C 1.37878 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99988 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00108 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.46962 * 110.99581 * 170.00427 * 10 9 7 12 12 C 1.53049 * 109.35970 * 183.19427 * 11 10 9 13 13 N 1.46960 * 109.36346 * 301.59288 * 12 11 10 14 14 C 1.46900 * 110.99978 * 183.19131 * 13 12 11 15 15 C 1.52999 * 109.47120 * 170.00371 * 14 13 12 16 16 N 1.46498 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.47056 * 125.41098 * 90.00081 * 16 15 14 18 18 C 1.54098 * 103.86466 * 179.73696 * 17 16 15 19 19 N 1.47056 * 103.86260 * 0.02562 * 18 17 16 20 20 C 1.33945 * 109.17788 * 359.97438 * 19 18 17 21 21 O 1.21588 * 123.03908 * 179.97438 * 20 19 18 22 22 C 1.46962 * 110.87857 * 59.32835 * 13 12 11 23 23 C 1.46950 * 111.00269 * 293.80515 * 10 9 7 24 24 H 0.97008 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46471 * 60.00386 * 9 7 2 26 26 H 1.08995 * 109.47416 * 300.00810 * 9 7 2 27 27 H 1.08996 * 109.48668 * 63.22448 * 11 10 9 28 28 H 1.09001 * 109.50422 * 303.16529 * 11 10 9 29 29 H 1.09006 * 109.48659 * 181.63301 * 12 11 10 30 30 H 1.09001 * 109.49289 * 61.56505 * 12 11 10 31 31 H 1.08993 * 109.47013 * 50.00512 * 14 13 12 32 32 H 1.09006 * 109.46937 * 290.00213 * 14 13 12 33 33 H 1.09007 * 109.47239 * 59.99982 * 15 14 13 34 34 H 1.08994 * 109.47361 * 300.00023 * 15 14 13 35 35 H 1.08998 * 110.54673 * 298.33367 * 17 16 15 36 36 H 1.09000 * 110.54647 * 60.99312 * 17 16 15 37 37 H 1.09000 * 110.54809 * 118.59281 * 18 17 16 38 38 H 1.08998 * 110.54922 * 241.40392 * 18 17 16 39 39 H 0.97001 * 125.41075 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.49087 * 60.64156 * 22 13 12 41 41 H 1.08996 * 109.48780 * 180.71255 * 22 13 12 42 42 H 1.09001 * 109.48852 * 296.77859 * 23 10 9 43 43 H 1.08997 * 109.49041 * 56.84520 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5792 0.0001 11 6 5.4504 -2.6254 -0.2386 12 6 5.9066 -4.0845 -0.3103 13 7 5.5606 -4.7654 0.9453 14 6 6.0502 -6.1504 0.9453 15 6 5.8963 -6.7457 2.3463 16 7 6.3840 -8.1272 2.3462 17 6 7.7653 -8.5431 2.6315 18 6 7.7226 -10.0782 2.5033 19 7 6.3219 -10.3642 2.1588 20 6 5.6413 -9.2124 2.0915 21 8 4.4568 -9.1571 1.8228 22 6 4.1112 -4.7192 1.1840 23 6 3.6550 -3.2600 1.2555 24 1 -0.4851 0.8401 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 5.9694 -2.1216 0.5768 28 1 5.6803 -2.1259 -1.1798 29 1 6.9859 -4.1212 -0.4584 30 1 5.4079 -4.5811 -1.1427 31 1 7.1016 -6.1641 0.6583 32 1 5.4717 -6.7403 0.2343 33 1 4.8448 -6.7321 2.6334 34 1 6.4747 -6.1559 3.0573 35 1 8.4519 -8.1171 1.9000 36 1 8.0527 -8.2491 3.6409 37 1 8.3880 -10.4144 1.7081 38 1 7.9879 -10.5487 3.4501 39 1 5.9497 -11.2467 2.0055 40 1 3.5921 -5.2229 0.3686 41 1 3.8816 -5.2186 2.1252 42 1 4.1537 -2.7635 2.0879 43 1 2.5758 -3.2233 1.4036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119313373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:28 Heat of formation + Delta-G solvation = -21.036323 kcal Electronic energy + Delta-G solvation = -22487.096353 eV Core-core repulsion = 19180.809691 eV Total energy + Delta-G solvation = -3306.286662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94965 -40.23418 -37.48999 -37.13520 -35.20908 -34.38142 -31.95099 -31.27070 -29.90723 -28.93186 -26.47437 -24.72605 -23.82402 -23.57496 -22.76522 -21.06162 -20.68147 -18.96054 -18.65964 -17.70598 -17.20523 -17.00079 -16.35149 -16.07845 -15.88172 -15.72455 -15.37992 -15.23648 -15.08532 -14.71484 -14.70221 -14.35060 -14.04262 -13.75855 -13.50075 -13.12884 -12.93331 -12.84289 -12.74283 -12.42403 -12.20976 -12.14073 -11.90270 -11.78107 -11.56678 -11.36567 -11.32173 -10.78554 -10.38146 -9.55067 -9.39552 -9.02900 -8.28737 -6.32951 1.34886 1.36983 1.48025 1.57257 2.06207 2.34623 2.84139 3.03843 3.17042 3.21371 3.63183 3.79011 3.95580 4.00490 4.15913 4.22131 4.32816 4.33522 4.44809 4.48588 4.52874 4.61910 4.70509 4.75061 4.78856 4.84542 4.91481 4.96576 4.99211 5.03191 5.09989 5.11226 5.18283 5.52102 5.66253 5.90627 5.95028 6.07266 6.19176 6.35533 6.53912 6.65816 6.73237 7.30841 7.54581 8.88189 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.003064 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.990084 B = 9135.884909 C = 9567.988250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.519 4.519 8 H 0.032 0.968 9 C 0.174 3.826 10 N -0.552 5.552 11 C 0.053 3.947 12 C 0.067 3.933 13 N -0.531 5.531 14 C 0.050 3.950 15 C 0.157 3.843 16 N -0.632 5.632 17 C 0.085 3.915 18 C 0.092 3.908 19 N -0.738 5.738 20 C 0.681 3.319 21 O -0.648 6.648 22 C 0.068 3.932 23 C 0.073 3.927 24 H 0.267 0.733 25 H -0.010 1.010 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.027 0.973 31 H 0.102 0.898 32 H 0.010 0.990 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.434 0.566 40 H 0.018 0.982 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.473 -18.335 6.521 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.277 5.277 11 C -0.075 4.075 12 C -0.061 4.061 13 N -0.256 5.256 14 C -0.079 4.079 15 C 0.035 3.965 16 N -0.370 5.370 17 C -0.037 4.037 18 C -0.031 4.031 19 N -0.399 5.399 20 C 0.381 3.619 21 O -0.530 6.530 22 C -0.061 4.061 23 C -0.055 4.055 24 H 0.076 0.924 25 H 0.007 0.993 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.045 0.955 31 H 0.120 0.880 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.276 0.724 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.751 -18.038 6.402 31.288 hybrid contribution -0.976 0.368 -0.293 1.083 sum 23.775 -17.670 6.109 30.246 Atomic orbital electron populations 1.70068 1.08262 1.28185 1.52544 1.25912 0.95654 1.03375 0.94224 0.85634 0.79293 0.78178 0.79329 1.18847 1.20696 1.17315 1.21272 0.91239 0.93151 1.50094 0.94919 1.19898 0.94084 0.86195 0.95109 1.61998 1.13625 1.17267 1.34805 1.22243 0.87266 0.96891 1.01122 1.22162 1.01480 0.92956 0.89483 1.62174 1.13044 1.15386 1.35006 1.22416 1.01216 0.87207 0.97090 1.21112 1.00179 0.78256 0.97001 1.47193 1.11580 1.05005 1.73262 1.22788 0.82345 0.94182 1.04395 1.22669 0.82004 0.94450 1.03991 1.45155 1.11980 1.07310 1.75478 1.16391 0.84440 0.83014 0.78067 1.90946 1.16371 1.87033 1.58669 1.22095 0.87939 0.95462 1.00569 1.21895 0.99735 0.93614 0.90280 0.92394 0.99279 0.95089 0.94312 0.89924 0.87112 0.95498 0.88013 0.97177 0.92455 0.86770 0.88052 0.87813 0.87650 0.87514 0.72418 0.96366 0.89443 0.94831 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.76 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.52 -31.21 9.03 25.60 0.23 -30.98 16 8 H 0.03 2.21 7.38 -2.91 -0.02 2.19 16 9 C 0.17 8.65 3.79 85.56 0.32 8.97 16 10 N -0.55 -24.10 4.70 -900.29 -4.23 -28.34 16 11 C 0.05 1.75 5.61 86.31 0.48 2.24 16 12 C 0.07 1.83 5.61 86.31 0.48 2.32 16 13 N -0.53 -14.65 4.71 -895.68 -4.22 -18.87 16 14 C 0.05 1.13 5.28 86.30 0.46 1.58 16 15 C 0.16 3.27 5.93 86.38 0.51 3.78 16 16 N -0.63 -11.63 2.96 -838.38 -2.48 -14.11 16 17 C 0.08 0.58 7.68 86.64 0.67 1.25 16 18 C 0.09 0.43 8.06 86.64 0.70 1.13 16 19 N -0.74 -10.59 6.37 -477.35 -3.04 -13.63 16 20 C 0.68 16.85 8.60 179.57 1.54 18.39 16 21 O -0.65 -23.97 17.53 -3.99 -0.07 -24.04 16 22 C 0.07 2.33 5.41 86.31 0.47 2.80 16 23 C 0.07 3.03 5.43 86.31 0.47 3.50 16 24 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 25 H -0.01 -0.51 7.18 -2.39 -0.02 -0.53 16 26 H 0.03 1.49 7.45 -2.39 -0.02 1.47 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 29 H 0.11 2.20 8.07 -2.38 -0.02 2.18 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.72 8.03 -2.39 -0.02 1.70 16 32 H 0.01 0.29 8.12 -2.38 -0.02 0.27 16 33 H 0.06 1.55 6.26 -2.38 -0.01 1.53 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.43 5.09 8.96 -92.71 -0.83 4.26 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 2.76 6.34 -2.39 -0.02 2.75 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.05 2.63 6.79 -2.39 -0.02 2.61 16 Total: -1.00 -83.31 338.59 -4.95 -88.26 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.11 Total: 8.97 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.80 Total: 15.76 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -13.67 Total: -135.70 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -83.31 -4.95 -88.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119313373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.223 kcal (2) G-P(sol) polarization free energy of solvation -83.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds