Wall clock time and date at job start Tue Mar 31 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 H 1.08997 * 109.46716 * 304.99705 * 5 4 2 7 7 C 1.52995 * 109.47020 * 184.99542 * 5 4 2 8 8 N 1.46500 * 109.47196 * 64.99371 * 5 4 2 9 9 C 1.36931 * 120.00025 * 204.99877 * 8 5 4 10 10 H 1.07998 * 120.00351 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00181 * 180.02562 * 9 8 5 12 12 N 1.31625 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00271 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47093 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47494 * 119.99817 * 13 11 9 16 16 H 1.48503 * 109.47071 * 240.00239 * 13 11 9 17 17 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 18 18 C 1.34777 * 120.00199 * 275.00460 * 17 2 1 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 2 21 21 H 1.08993 * 115.50896 * 34.34821 * 20 18 17 22 22 C 1.52998 * 117.43261 * 179.72263 * 20 18 17 23 23 H 1.09004 * 119.80624 * 354.34904 * 22 20 18 24 24 C 1.54478 * 118.06667 * 198.08492 * 22 20 18 25 25 O 1.44425 * 104.79925 * 321.12844 * 24 22 20 26 26 C 1.44429 * 105.27790 * 319.48556 * 25 24 22 27 27 C 1.52998 * 117.42926 * 249.07030 * 20 18 17 28 28 H 1.08996 * 119.81172 * 4.63124 * 27 20 18 29 29 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 30 30 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 31 31 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 33 33 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 34 34 H 1.08997 * 109.47509 * 299.99677 * 7 5 4 35 35 H 1.09006 * 109.47535 * 60.00108 * 7 5 4 36 36 H 1.09006 * 109.47305 * 179.97438 * 7 5 4 37 37 H 0.97003 * 119.99657 * 25.00473 * 8 5 4 38 38 H 0.96998 * 119.99846 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99484 * 94.99557 * 17 2 1 40 40 H 1.08994 * 110.37218 * 79.95742 * 24 22 20 41 41 H 1.09000 * 110.37081 * 202.29788 * 24 22 20 42 42 H 1.09004 * 110.36836 * 159.34207 * 26 25 24 43 43 H 1.08998 * 110.37528 * 281.57447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6240 8 7 4.1536 -1.3341 -0.1824 9 6 5.3943 -0.9855 0.2806 10 1 5.9385 -0.1789 -0.1879 11 6 5.9524 -1.6689 1.3522 12 7 5.2894 -2.6523 1.9230 13 14 7.6446 -1.1929 1.9843 14 1 8.1754 -0.0653 1.1769 15 1 7.5433 -0.7791 3.4068 16 1 8.5605 -2.3563 1.8712 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3572 19 8 1.8589 1.1586 2.4115 20 6 2.6553 -0.7271 3.5861 21 1 3.4026 -1.5000 3.4068 22 6 2.7844 0.0939 4.8706 23 1 2.6011 1.1682 4.8478 24 6 3.6783 -0.4616 6.0014 25 8 3.4332 -1.8849 6.0000 26 6 2.0115 -2.0261 5.7883 27 6 1.6627 -0.9590 4.7271 28 1 0.6161 -0.6828 4.5994 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1369 34 1 3.7723 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4658 36 1 5.1508 -1.1476 -2.6701 37 1 3.6647 -2.0584 0.2386 38 1 5.6793 -3.1296 2.6720 39 1 2.2490 -1.6317 1.1526 40 1 4.7279 -0.2571 5.7906 41 1 3.3914 -0.0281 6.9595 42 1 1.7809 -3.0234 5.4136 43 1 1.4691 -1.8344 6.7141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135231199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:29 Heat of formation + Delta-G solvation = -39.606704 kcal Electronic energy + Delta-G solvation = -23825.256937 eV Core-core repulsion = 20485.872252 eV Total energy + Delta-G solvation = -3339.384685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33868 -38.78617 -36.74106 -34.27199 -33.79271 -32.21382 -30.55633 -28.52444 -28.47907 -26.37418 -25.98108 -23.62801 -22.35227 -20.46383 -20.26968 -20.18175 -19.07013 -17.26766 -17.09697 -15.83346 -15.70343 -15.11779 -14.93941 -14.79129 -14.15761 -13.86879 -13.69527 -13.45801 -12.88535 -12.77546 -12.42310 -12.35942 -12.11195 -11.93072 -11.73466 -11.64770 -11.45970 -11.30434 -10.99094 -10.82351 -10.71090 -10.36047 -10.20156 -9.92630 -9.89540 -9.85258 -9.65281 -9.40296 -9.11611 -8.92589 -8.32637 -6.91431 -5.76696 -3.02789 3.05197 3.44936 3.52185 3.53378 3.66660 4.01062 4.25562 4.61940 4.92702 4.98993 5.10815 5.12869 5.20693 5.42999 5.51508 5.53084 5.57381 5.67666 5.69052 5.77691 5.82994 5.90077 5.91776 5.98882 6.00835 6.02997 6.15728 6.16789 6.25856 6.36291 6.43516 6.56864 6.61603 6.74438 6.87285 6.96869 7.07158 7.21977 7.73983 8.24234 8.42702 8.94414 9.54343 10.07605 10.43247 11.45887 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.008490 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.803245 B = 3297.298735 C = 5089.975701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.230 4.230 10 H 0.067 0.933 11 C -0.007 4.007 12 N -0.930 5.930 13 Si 0.898 3.102 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.294 1.294 17 N -0.689 5.689 18 C 0.561 3.439 19 O -0.567 6.567 20 C -0.131 4.131 21 H 0.153 0.847 22 C -0.169 4.169 23 H 0.129 0.871 24 C 0.072 3.928 25 O -0.367 6.367 26 C 0.075 3.925 27 C -0.184 4.184 28 H 0.120 0.880 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.378 0.622 38 H 0.255 0.745 39 H 0.407 0.593 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 1.808 1.693 10.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.359 5.359 9 C -0.361 4.361 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.579 5.579 13 Si 0.730 3.270 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.221 1.221 17 N -0.341 5.341 18 C 0.348 3.652 19 O -0.447 6.447 20 C -0.152 4.152 21 H 0.171 0.829 22 C -0.188 4.188 23 H 0.147 0.853 24 C -0.004 4.004 25 O -0.285 6.285 26 C -0.002 4.002 27 C -0.203 4.203 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.213 0.787 38 H 0.065 0.935 39 H 0.244 0.756 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.856 2.533 1.783 10.331 hybrid contribution 0.892 -0.269 0.346 0.994 sum -8.963 2.264 2.128 9.487 Atomic orbital electron populations 1.22204 0.96381 1.01595 1.01826 1.20805 0.92406 0.97706 0.84655 0.90013 1.22205 0.97853 1.00606 0.96528 1.20277 0.89675 0.95872 0.88261 0.93502 1.22422 1.01521 1.00335 0.98066 1.42447 1.18719 1.39986 1.34780 1.19212 0.93251 1.13078 1.10597 0.91547 1.24567 0.98269 0.98598 0.98893 1.69555 1.37914 1.24472 1.25999 0.86250 0.84761 0.77361 0.78638 1.20939 1.21862 1.22128 1.45857 1.65408 1.14428 1.08366 1.19250 0.75959 0.86096 0.83899 1.90594 1.52158 1.16227 1.85746 1.22309 1.02192 1.03084 0.87636 0.82905 1.23882 0.99639 0.98380 0.96874 0.85314 1.22926 1.00581 0.81215 0.95725 1.89214 1.22984 1.22758 1.93555 1.22873 0.82540 0.99203 0.95587 1.23950 0.96398 0.99942 1.00022 0.86197 0.92554 0.92165 0.92797 0.91728 0.90870 0.93613 0.94645 0.92891 0.78731 0.93484 0.75562 0.88636 0.91556 0.88707 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 2 C 0.15 2.42 2.57 -67.93 -0.17 2.25 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -2.01 4.43 -26.73 -0.12 -2.12 16 5 C 0.17 3.15 2.89 -67.93 -0.20 2.96 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 8 N -0.72 -16.16 3.84 -53.43 -0.21 -16.36 16 9 C -0.23 -6.02 9.93 -15.06 -0.15 -6.17 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.93 -25.29 12.69 55.49 0.70 -24.58 16 13 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 N -0.69 -12.55 3.80 -53.81 -0.20 -12.76 16 18 C 0.56 11.26 7.57 -10.98 -0.08 11.18 16 19 O -0.57 -12.59 16.01 5.55 0.09 -12.50 16 20 C -0.13 -2.50 5.56 -91.77 -0.51 -3.01 16 21 H 0.15 3.39 7.69 -51.93 -0.40 2.99 16 22 C -0.17 -2.85 6.68 -89.05 -0.60 -3.45 16 23 H 0.13 2.18 7.82 -51.93 -0.41 1.77 16 24 C 0.07 1.13 7.53 37.93 0.29 1.41 16 25 O -0.37 -6.33 11.31 -35.23 -0.40 -6.73 16 26 C 0.07 1.05 7.53 37.93 0.29 1.33 16 27 C -0.18 -2.82 6.95 -89.05 -0.62 -3.44 16 28 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.38 8.73 5.70 -40.82 -0.23 8.50 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.41 7.57 6.51 -40.82 -0.27 7.31 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -29.27 350.01 -8.19 -37.46 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -7.16 Total: 16.71 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.27 Total: -3.65 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.29 Total: -53.70 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.31 Total: -19.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.27 -8.19 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135231199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds