Wall clock time and date at job start Tue Mar 31 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46466 * 2 1 4 4 O 1.42902 * 109.47383 * 239.99577 * 2 1 3 5 5 C 1.42904 * 113.99647 * 90.00078 * 4 2 1 6 6 C 1.52999 * 109.46325 * 179.97438 * 5 4 2 7 7 C 1.53004 * 117.49896 * 243.74072 * 6 5 4 8 8 C 1.53006 * 117.49388 * 175.08456 * 6 5 4 9 9 C 1.50704 * 109.46781 * 119.99345 * 2 1 3 10 10 O 1.21277 * 119.99685 * 110.79472 * 9 2 1 11 11 N 1.34777 * 119.99904 * 290.79321 * 9 2 1 12 12 C 1.47019 * 125.65006 * 354.98503 * 11 9 2 13 13 C 1.54328 * 107.27027 * 181.09694 * 12 11 9 14 14 C 1.55158 * 102.94159 * 22.18979 * 13 12 11 15 15 H 1.08999 * 111.03760 * 82.58970 * 14 13 12 16 16 N 1.46501 * 111.00181 * 206.42522 * 14 13 12 17 17 C 1.36937 * 120.00153 * 267.19773 * 16 14 13 18 18 H 1.08008 * 119.99864 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00264 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00214 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47072 * 89.99985 * 21 19 17 23 23 H 1.48494 * 109.47086 * 209.99739 * 21 19 17 24 24 H 1.48497 * 109.46988 * 329.99603 * 21 19 17 25 25 C 1.47422 * 125.64326 * 175.02784 * 11 9 2 26 26 H 1.09002 * 109.46820 * 185.36001 * 1 2 3 27 27 H 1.08997 * 109.47591 * 305.36717 * 1 2 3 28 28 H 1.09007 * 109.46730 * 65.36591 * 1 2 3 29 29 H 1.08996 * 109.47098 * 299.99540 * 5 4 2 30 30 H 1.08993 * 109.46872 * 60.00248 * 5 4 2 31 31 H 1.08999 * 115.55453 * 29.41704 * 6 5 4 32 32 H 1.08998 * 117.49566 * 0.02562 * 7 6 5 33 33 H 1.08994 * 117.49813 * 145.02182 * 7 6 5 34 34 H 1.08997 * 117.50119 * 214.97583 * 8 6 5 35 35 H 1.09003 * 117.49782 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.88177 * 300.51110 * 12 11 9 37 37 H 1.08993 * 109.88668 * 61.52249 * 12 11 9 38 38 H 1.09000 * 110.71652 * 263.82444 * 13 12 11 39 39 H 1.09000 * 110.72040 * 140.55484 * 13 12 11 40 40 H 0.96994 * 119.99957 * 86.92601 * 16 14 13 41 41 H 0.96998 * 120.00626 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.37187 * 36.99497 * 25 11 9 43 43 H 1.09005 * 110.45878 * 274.71488 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1829 -2.2941 6 6 2.7093 -0.6408 -3.4786 7 6 4.1074 -0.3219 -4.0120 8 6 2.8701 0.0764 -4.8206 9 6 2.0323 -0.7103 1.2306 10 8 2.5859 -1.7844 1.1272 11 7 1.8662 -0.1519 2.4459 12 6 1.3100 1.1839 2.7064 13 6 1.3389 1.4023 4.2339 14 6 2.4312 0.4069 4.7067 15 1 3.4273 0.8327 4.5862 16 7 2.2027 -0.0031 6.0945 17 6 2.8060 0.6780 7.1178 18 1 3.4500 1.5178 6.9018 19 6 2.5900 0.2893 8.4327 20 7 1.8048 -0.7337 8.6960 21 14 3.4125 1.2189 9.8287 22 1 2.5300 2.3276 10.2728 23 1 3.6545 0.2936 10.9647 24 1 4.7069 1.7745 9.3585 25 6 2.2130 -0.7791 3.7342 26 1 -0.3633 -1.0232 0.0960 27 1 -0.3634 0.5948 0.8380 28 1 -0.3633 0.4284 -0.9342 29 1 1.2539 0.6545 -2.5589 30 1 2.9320 0.9512 -2.0450 31 1 2.3880 -1.6822 -3.4999 32 1 4.6646 0.4745 -3.5187 33 1 4.7057 -1.1533 -4.3845 34 1 2.6551 -0.4931 -5.7247 35 1 2.6129 1.1350 -4.8595 36 1 1.9181 1.9415 2.2121 37 1 0.2843 1.2360 2.3416 38 1 0.3742 1.1555 4.6770 39 1 1.6226 2.4276 4.4715 40 1 1.6209 -0.7545 6.2887 41 1 1.6535 -1.0052 9.6148 42 1 3.1280 -1.3636 3.6375 43 1 1.3956 -1.4102 4.0830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181426987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:21 Heat of formation + Delta-G solvation = -59.619696 kcal Electronic energy + Delta-G solvation = -22110.202126 eV Core-core repulsion = 18769.949613 eV Total energy + Delta-G solvation = -3340.252514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34162 -39.52947 -38.56695 -37.41178 -35.97892 -33.62874 -32.35248 -30.97509 -29.23185 -28.07987 -26.12574 -24.99168 -23.51285 -23.25391 -21.75490 -21.66839 -20.38822 -19.33164 -18.49634 -17.80055 -17.39369 -16.92445 -16.59735 -16.13392 -15.87909 -15.63632 -15.26758 -14.89051 -14.71187 -14.43253 -14.11502 -13.92025 -13.66561 -13.34192 -13.23540 -13.06100 -12.95437 -12.67142 -12.59399 -12.37980 -12.35011 -12.14500 -12.00207 -11.76160 -11.58158 -11.40784 -11.29004 -10.94539 -10.90397 -10.40139 -9.71775 -9.05472 -7.95389 -5.25738 1.48431 1.49218 1.50982 1.58748 1.62077 2.55167 2.64418 2.97384 3.33159 3.43658 3.69895 3.81373 3.88606 3.92589 3.95511 3.98093 4.06661 4.15902 4.24431 4.31697 4.33804 4.46830 4.50494 4.58542 4.67407 4.75252 4.77755 4.78925 4.84454 4.98561 5.01185 5.16060 5.20407 5.22847 5.25119 5.27367 5.42357 5.53519 6.10981 6.25229 6.48367 7.05832 7.31998 8.03299 8.27319 9.27891 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040055 B = 0.002772 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.867377 B =10099.001352 C =10200.168794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.083 3.917 3 H 0.116 0.884 4 O -0.389 6.389 5 C 0.087 3.913 6 C -0.175 4.175 7 C -0.187 4.187 8 C -0.152 4.152 9 C 0.519 3.481 10 O -0.581 6.581 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.144 4.144 14 C 0.166 3.834 15 H 0.064 0.936 16 N -0.729 5.729 17 C -0.240 4.240 18 H 0.082 0.918 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.106 3.894 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.054 0.946 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 8.870 -25.496 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.134 0.866 4 O -0.308 6.308 5 C 0.012 3.988 6 C -0.194 4.194 7 C -0.224 4.224 8 C -0.189 4.189 9 C 0.308 3.692 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.184 4.184 14 C 0.056 3.944 15 H 0.082 0.918 16 N -0.368 5.368 17 C -0.372 4.372 18 H 0.100 0.900 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.194 1.194 25 C -0.019 4.019 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.291 8.200 -25.551 26.933 hybrid contribution 0.236 -0.352 1.391 1.454 sum -2.056 7.848 -24.161 25.487 Atomic orbital electron populations 1.22265 0.91460 1.03291 1.05296 1.21893 0.96410 0.96428 0.83020 0.86620 1.88020 1.86873 1.35980 1.19905 1.22323 1.00665 0.91734 0.84124 1.22142 1.01634 1.00760 0.94817 1.23175 0.90924 1.03900 1.04384 1.23085 1.00530 1.01813 0.93453 1.20899 0.78530 0.85491 0.84243 1.90686 1.44428 1.24442 1.86474 1.48416 1.62454 1.18986 1.04511 1.22432 1.00450 0.82567 0.96709 1.23218 1.00373 1.01363 0.93483 1.21449 0.97401 0.92462 0.83136 0.91786 1.42416 1.56490 1.37517 1.00366 1.19618 1.21518 1.09577 0.86462 0.90047 1.25589 1.01546 0.99657 0.99935 1.69820 1.43021 1.30254 1.18886 0.85127 0.78402 0.77323 0.78805 1.21121 1.22658 1.19374 1.22293 0.99758 0.96595 0.83223 0.93209 0.88862 0.88552 0.90381 0.92083 0.88473 0.88279 0.88672 0.87450 0.87007 0.88560 0.88454 0.91572 0.89288 0.79376 0.94012 0.92702 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.40 71.98 0.68 -2.01 16 2 C 0.08 1.80 2.53 29.85 0.08 1.88 16 3 H 0.12 1.71 7.60 -2.39 -0.02 1.69 16 4 O -0.39 -9.95 9.54 -130.11 -1.24 -11.20 16 5 C 0.09 1.46 6.03 71.98 0.43 1.89 16 6 C -0.18 -2.96 6.05 -10.79 -0.07 -3.03 16 7 C -0.19 -2.73 10.18 30.62 0.31 -2.42 16 8 C -0.15 -1.68 10.25 30.62 0.31 -1.37 16 9 C 0.52 16.51 7.17 87.66 0.63 17.14 16 10 O -0.58 -24.81 16.76 15.85 0.27 -24.54 16 11 N -0.61 -17.93 3.33 -811.80 -2.70 -20.64 16 12 C 0.10 2.11 6.17 86.73 0.54 2.65 16 13 C -0.14 -4.11 6.65 31.78 0.21 -3.90 16 14 C 0.17 6.22 3.71 46.38 0.17 6.40 16 15 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 16 N -0.73 -35.53 5.24 -316.37 -1.66 -37.19 16 17 C -0.24 -12.82 9.96 84.03 0.84 -11.98 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 21 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.11 3.84 6.58 86.86 0.57 4.41 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.19 5.70 -2.39 -0.01 1.17 16 28 H 0.10 1.07 7.78 -2.38 -0.02 1.05 16 29 H 0.08 0.91 7.78 -2.39 -0.02 0.89 16 30 H 0.06 0.88 7.82 -2.39 -0.02 0.86 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.10 1.52 5.92 -2.39 -0.01 1.50 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.37 19.87 7.76 -92.71 -0.72 19.16 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.05 2.21 7.99 -2.39 -0.02 2.19 16 43 H 0.06 2.23 8.00 -2.38 -0.02 2.21 16 Total: -1.00 -73.33 352.70 2.42 -70.91 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.27 Total: 27.93 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.17 Total: 5.91 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -4.08 Total: -116.12 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.98 Total: -35.74 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.33 2.42 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181426987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.294 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds