Wall clock time and date at job start Tue Mar 31 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47258 * 2 1 4 4 O 1.42903 * 109.47146 * 119.99914 * 2 1 3 5 5 C 1.42898 * 114.00101 * 270.00062 * 4 2 1 6 6 C 1.53001 * 109.47280 * 179.97438 * 5 4 2 7 7 C 1.52996 * 117.50010 * 243.74799 * 6 5 4 8 8 C 1.52998 * 117.49903 * 175.08801 * 6 5 4 9 9 C 1.50692 * 109.47271 * 239.99781 * 2 1 3 10 10 O 1.21287 * 120.00613 * 249.59725 * 9 2 1 11 11 N 1.34778 * 120.00150 * 69.59520 * 9 2 1 12 12 C 1.47020 * 125.65494 * 175.23005 * 11 9 2 13 13 C 1.54320 * 107.27290 * 181.09565 * 12 11 9 14 14 C 1.55154 * 102.94192 * 22.19641 * 13 12 11 15 15 H 1.08999 * 111.03972 * 82.58458 * 14 13 12 16 16 N 1.46507 * 111.00058 * 206.42025 * 14 13 12 17 17 C 1.36934 * 120.00333 * 267.19356 * 16 14 13 18 18 H 1.08001 * 119.99608 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00188 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00195 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46788 * 90.00666 * 21 19 17 23 23 H 1.48502 * 109.47098 * 210.00106 * 21 19 17 24 24 H 1.48493 * 109.47194 * 330.00477 * 21 19 17 25 25 C 1.47429 * 125.64471 * 355.27343 * 11 9 2 26 26 H 1.09005 * 109.46786 * 184.95937 * 1 2 3 27 27 H 1.09003 * 109.46977 * 304.95814 * 1 2 3 28 28 H 1.08993 * 109.46985 * 64.96051 * 1 2 3 29 29 H 1.08998 * 109.47269 * 300.00303 * 5 4 2 30 30 H 1.09000 * 109.47124 * 59.99944 * 5 4 2 31 31 H 1.08998 * 115.55098 * 29.41918 * 6 5 4 32 32 H 1.09002 * 117.49827 * 359.97438 * 7 6 5 33 33 H 1.08998 * 117.50450 * 145.02218 * 7 6 5 34 34 H 1.09005 * 117.49893 * 214.98131 * 8 6 5 35 35 H 1.08997 * 117.50084 * 359.97341 * 8 6 5 36 36 H 1.08999 * 109.88429 * 300.51745 * 12 11 9 37 37 H 1.09002 * 109.88175 * 61.52429 * 12 11 9 38 38 H 1.09005 * 110.71940 * 263.82644 * 13 12 11 39 39 H 1.09005 * 110.71890 * 140.56216 * 13 12 11 40 40 H 0.97006 * 119.99729 * 87.19826 * 16 14 13 41 41 H 0.96998 * 120.00293 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.36886 * 36.99804 * 25 11 9 43 43 H 1.08996 * 110.36823 * 274.67483 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6408 3.4792 7 6 1.8106 -0.7277 4.7154 8 6 3.0877 0.1153 4.7540 9 6 2.0324 -0.7104 -1.2304 10 8 2.5798 -1.7878 -1.1276 11 7 1.8734 -0.1486 -2.4451 12 6 2.3994 -0.6804 -3.7108 13 6 1.9950 0.3067 -4.8259 14 6 1.7511 1.6275 -4.0491 15 1 2.6883 2.1535 -3.8676 16 7 0.7994 2.4860 -4.7588 17 6 1.2546 3.4363 -5.6333 18 1 2.3153 3.5527 -5.8001 19 6 0.3529 4.2492 -6.3061 20 7 -0.9399 4.1070 -6.1032 21 14 0.9740 5.5461 -7.4985 22 1 1.0780 4.9588 -8.8585 23 1 0.0264 6.6892 -7.5243 24 1 2.3110 6.0212 -7.0608 25 6 1.1438 1.1017 -2.7246 26 1 -0.3633 -1.0239 0.0888 27 1 -0.3633 0.5888 0.8423 28 1 -0.3633 0.4349 -0.9310 29 1 2.9319 0.9513 2.0450 30 1 1.2538 0.6546 2.5589 31 1 3.2968 -1.5212 3.2220 32 1 0.8586 -0.1976 4.6845 33 1 1.8093 -1.6650 5.2716 34 1 3.9262 -0.2680 5.3355 35 1 2.9763 1.1995 4.7482 36 1 3.4855 -0.7558 -3.6583 37 1 1.9689 -1.6623 -3.9077 38 1 1.0819 -0.0238 -5.3211 39 1 2.8039 0.4269 -5.5466 40 1 -0.1533 2.3812 -4.6092 41 1 -1.5700 4.6754 -6.5731 42 1 1.3035 1.8216 -1.9220 43 1 0.0798 0.9004 -2.8486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181426988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:25 Heat of formation + Delta-G solvation = -40.737512 kcal Electronic energy + Delta-G solvation = -22230.525094 eV Core-core repulsion = 18891.091374 eV Total energy + Delta-G solvation = -3339.433721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12771 -38.56191 -37.37474 -36.50134 -34.15071 -32.22831 -31.16084 -29.41493 -27.71129 -27.27842 -24.71988 -23.61166 -22.69144 -22.09768 -21.02388 -20.23416 -19.18751 -17.61913 -17.37602 -16.62436 -16.05311 -15.87325 -15.38710 -15.13497 -14.53597 -14.40542 -13.86903 -13.63348 -13.38078 -13.11182 -12.96495 -12.77254 -12.54796 -12.20037 -11.91943 -11.87160 -11.77011 -11.57379 -11.25768 -11.12585 -10.89981 -10.80128 -10.74528 -10.58082 -10.32250 -10.14105 -9.88967 -9.80631 -9.39339 -9.03472 -8.44877 -7.13137 -5.89810 -3.20641 2.70496 2.74451 3.36543 3.41631 3.43519 3.44261 3.73325 4.39951 4.50953 4.57928 4.59138 4.75939 4.80521 4.93293 5.04255 5.07328 5.19253 5.21138 5.32352 5.37977 5.38803 5.48072 5.53937 5.57383 5.57625 5.59963 5.71050 5.79429 5.83562 5.93148 6.04309 6.09989 6.14455 6.31596 6.47283 6.57178 6.82787 6.98200 7.59061 7.66092 8.27099 8.29665 9.39509 9.92040 10.27023 11.32249 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.003134 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.087038 B = 8931.379282 C = 9513.020728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.086 0.914 4 O -0.355 6.355 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.530 3.470 10 O -0.530 6.530 11 N -0.612 5.612 12 C 0.111 3.889 13 C -0.156 4.156 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.714 5.714 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.086 3.914 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -6.810 16.850 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.103 0.897 4 O -0.274 6.274 5 C 0.013 3.987 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.317 3.683 10 O -0.406 6.406 11 N -0.348 5.348 12 C -0.011 4.011 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.354 5.354 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.038 4.038 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.786 -7.473 16.886 19.076 hybrid contribution -0.156 0.978 -0.699 1.212 sum 4.630 -6.495 16.188 18.046 Atomic orbital electron populations 1.22282 0.93369 1.03812 1.03655 1.21817 0.95333 0.96094 0.85232 0.89667 1.88019 1.86568 1.34038 1.18726 1.22115 0.99120 0.92035 0.85401 1.22116 1.04055 1.02472 0.88309 1.23082 0.94954 1.02115 1.01279 1.22989 0.99317 0.98907 0.99945 1.19940 0.79608 0.85647 0.83130 1.90692 1.43219 1.20831 1.85825 1.48391 1.54332 1.25808 1.06231 1.21968 0.98536 0.97741 0.82867 1.23443 1.02346 0.97055 0.96838 1.21296 0.94012 0.90082 0.88616 0.91375 1.42264 1.04631 1.39118 1.49398 1.19218 0.92360 1.09656 1.16453 0.90936 1.24767 0.95280 0.99975 1.00531 1.69654 1.00271 1.42027 1.45821 0.86170 0.77644 0.81144 0.81082 1.21587 1.21700 1.20660 1.22818 0.96596 0.84611 0.99780 0.91082 0.91324 0.90222 0.92700 0.92917 0.86671 0.88637 0.88613 0.88398 0.88614 0.91935 0.92013 0.90576 0.90598 0.77950 0.93309 0.90809 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.43 37.16 0.35 -1.60 16 2 C 0.08 1.00 2.46 -27.89 -0.07 0.93 16 3 H 0.09 0.96 7.15 -51.93 -0.37 0.59 16 4 O -0.36 -4.97 9.54 -54.96 -0.52 -5.50 16 5 C 0.09 0.93 6.03 37.16 0.22 1.16 16 6 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 7 C -0.18 -1.39 10.18 -26.70 -0.27 -1.66 16 8 C -0.17 -1.29 10.25 -26.70 -0.27 -1.56 16 9 C 0.53 8.65 7.20 -10.99 -0.08 8.57 16 10 O -0.53 -10.59 16.86 -14.17 -0.24 -10.83 16 11 N -0.61 -9.43 3.33 -170.53 -0.57 -10.00 16 12 C 0.11 1.70 6.87 -3.07 -0.02 1.68 16 13 C -0.16 -2.54 6.65 -24.90 -0.17 -2.70 16 14 C 0.17 3.09 3.71 -65.78 -0.24 2.85 16 15 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 16 N -0.71 -16.32 5.24 -51.35 -0.27 -16.58 16 17 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 21 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.09 1.29 5.07 -2.53 -0.01 1.28 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.64 7.99 -51.93 -0.41 0.22 16 28 H 0.08 0.89 5.84 -51.93 -0.30 0.58 16 29 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.05 0.47 7.72 -51.93 -0.40 0.07 16 31 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 0.69 8.03 -51.93 -0.42 0.28 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.39 9.35 7.76 -40.82 -0.32 9.03 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.07 1.00 7.19 -51.93 -0.37 0.62 16 43 H 0.07 1.10 7.22 -51.93 -0.38 0.73 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -31.02 352.76 -9.10 -40.12 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.16 Total: 6.93 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.36 Total: 0.09 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.11 Total: -52.47 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.76 Total: -16.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.02 -9.10 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181426988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.616 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds