Wall clock time and date at job start Tue Mar 31 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 120.00160 * 2 1 4 4 N 1.34780 * 120.00275 * 179.97438 * 2 1 3 5 5 C 1.48190 * 127.79447 * 359.97438 * 4 2 1 6 6 C 1.54515 * 104.63216 * 140.71477 * 5 4 2 7 7 H 1.08997 * 110.47479 * 264.90786 * 6 5 4 8 8 C 1.53010 * 110.37619 * 142.60800 * 6 5 4 9 9 N 1.46500 * 109.47041 * 69.63881 * 8 6 5 10 10 C 1.36936 * 120.00105 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.38807 * 120.00051 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00284 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00148 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47184 * 90.00275 * 14 12 10 16 16 H 1.48502 * 109.46979 * 210.00505 * 14 12 10 17 17 H 1.48502 * 109.46993 * 330.00200 * 14 12 10 18 18 C 1.53782 * 104.78430 * 23.78469 * 6 5 4 19 19 C 1.48256 * 127.80039 * 179.97438 * 4 2 1 20 20 C 1.52590 * 110.27822 * 118.78283 * 18 6 5 21 21 C 1.53204 * 109.24379 * 177.72491 * 20 18 6 22 22 O 1.42915 * 109.33597 * 303.29256 * 21 20 18 23 23 C 1.42913 * 114.21755 * 61.61896 * 22 21 20 24 24 C 1.52703 * 110.34045 * 240.91210 * 18 6 5 25 25 H 1.08991 * 109.47538 * 239.99975 * 1 2 3 26 26 H 1.08997 * 109.47038 * 0.02562 * 1 2 3 27 27 H 1.09011 * 109.46616 * 120.00102 * 1 2 3 28 28 H 1.08996 * 110.40709 * 21.92745 * 5 4 2 29 29 H 1.09003 * 110.40347 * 259.50622 * 5 4 2 30 30 H 1.08995 * 109.47286 * 189.64334 * 8 6 5 31 31 H 1.09009 * 109.46832 * 309.64426 * 8 6 5 32 32 H 0.97001 * 120.00154 * 0.02562 * 9 8 6 33 33 H 0.97000 * 120.00416 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.42177 * 100.37525 * 19 4 2 35 35 H 1.08997 * 110.43134 * 337.89320 * 19 4 2 36 36 H 1.09002 * 109.51671 * 57.78106 * 20 18 6 37 37 H 1.09001 * 109.51643 * 297.67068 * 20 18 6 38 38 H 1.09000 * 109.49188 * 63.25451 * 21 20 18 39 39 H 1.09001 * 109.49379 * 183.30806 * 21 20 18 40 40 H 1.09003 * 109.49050 * 58.34622 * 23 22 21 41 41 H 1.09000 * 109.49220 * 178.42044 * 23 22 21 42 42 H 1.09004 * 109.50314 * 62.40155 * 24 18 6 43 43 H 1.08997 * 109.55213 * 302.28052 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.6210 -2.5392 0.0017 6 6 2.5445 -3.3385 -0.9448 7 1 2.1262 -3.3674 -1.9509 8 6 2.7509 -4.7586 -0.4138 9 7 1.5012 -5.5129 -0.5383 10 6 1.4443 -6.8168 -0.1239 11 1 2.3205 -7.2890 0.2950 12 6 0.2603 -7.5317 -0.2423 13 7 0.2054 -8.7848 0.1564 14 14 -1.2556 -6.7148 -0.9663 15 1 -1.2744 -6.9209 -2.4368 16 1 -2.4749 -7.3142 -0.3669 17 1 -1.2227 -5.2598 -0.6708 18 6 3.8744 -2.5665 -0.9397 19 6 3.6498 -1.3683 0.0001 20 6 4.9973 -3.4509 -0.4054 21 6 6.3193 -2.6789 -0.4638 22 8 6.5580 -2.2501 -1.8061 23 6 5.5644 -1.3626 -2.3234 24 6 4.2091 -2.0766 -2.3468 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8901 28 1 0.5998 -2.5332 -0.3794 29 1 1.6500 -2.9607 1.0065 30 1 3.5324 -5.2524 -0.9913 31 1 3.0461 -4.7152 0.6346 32 1 0.7140 -5.0888 -0.9143 33 1 -0.6220 -9.2843 0.0740 34 1 4.0021 -1.6015 1.0049 35 1 4.1550 -0.4827 -0.3851 36 1 5.0738 -4.3508 -1.0158 37 1 4.7827 -3.7281 0.6267 38 1 6.2620 -1.8095 0.1911 39 1 7.1334 -3.3265 -0.1383 40 1 5.4994 -0.4793 -1.6880 41 1 5.8355 -1.0635 -3.3359 42 1 3.4383 -1.3835 -2.6838 43 1 4.2571 -2.9267 -3.0272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186211149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:37 Heat of formation + Delta-G solvation = -88.568128 kcal Electronic energy + Delta-G solvation = -23716.583198 eV Core-core repulsion = 20375.075386 eV Total energy + Delta-G solvation = -3341.507812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03303 -40.05725 -38.47604 -36.50527 -34.66079 -33.59538 -32.18832 -31.17724 -30.98209 -27.48697 -27.20080 -25.44204 -24.87733 -23.49230 -22.06551 -20.42504 -20.01989 -19.17071 -18.12616 -17.13465 -17.02784 -16.95849 -16.53408 -16.38853 -15.96595 -15.80549 -15.42824 -15.20477 -14.77661 -14.63308 -14.04086 -13.93177 -13.60604 -13.47619 -13.23909 -13.18744 -13.04331 -12.92390 -12.82021 -12.52110 -12.34717 -12.16624 -12.00804 -11.88955 -11.76197 -11.24868 -11.14842 -10.99759 -10.85851 -10.38557 -9.82877 -9.24440 -7.98495 -5.32190 1.39865 1.45323 1.52599 1.54490 1.92563 2.52493 2.97329 3.24476 3.32651 3.38229 3.54287 3.75652 3.86576 4.04812 4.06857 4.12386 4.17512 4.20164 4.34961 4.39873 4.47271 4.54139 4.58854 4.61666 4.65893 4.70959 4.79442 4.83123 4.87438 4.96535 5.01510 5.04560 5.10768 5.13784 5.19581 5.39758 5.40786 5.80834 6.24571 6.27614 6.49242 7.05525 7.12555 7.87611 8.06954 9.23029 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.005903 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.335583 B = 4742.288865 C = 6143.991546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.526 3.474 3 O -0.597 6.597 4 N -0.620 5.620 5 C 0.109 3.891 6 C -0.094 4.094 7 H 0.086 0.914 8 C 0.168 3.832 9 N -0.756 5.756 10 C -0.231 4.231 11 H 0.056 0.944 12 C -0.065 4.065 13 N -0.986 5.986 14 Si 0.952 3.048 15 H -0.283 1.283 16 H -0.300 1.300 17 H -0.239 1.239 18 C -0.056 4.056 19 C 0.110 3.890 20 C -0.144 4.144 21 C 0.058 3.942 22 O -0.399 6.399 23 C 0.060 3.940 24 C -0.135 4.135 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.366 0.634 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 18.255 -2.654 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.318 3.682 3 O -0.479 6.479 4 N -0.353 5.353 5 C -0.014 4.014 6 C -0.114 4.114 7 H 0.105 0.895 8 C 0.042 3.958 9 N -0.402 5.402 10 C -0.362 4.362 11 H 0.074 0.926 12 C -0.257 4.257 13 N -0.637 5.637 14 Si 0.780 3.220 15 H -0.209 1.209 16 H -0.228 1.228 17 H -0.163 1.163 18 C -0.057 4.057 19 C -0.012 4.012 20 C -0.182 4.182 21 C -0.018 4.018 22 O -0.318 6.318 23 C -0.017 4.017 24 C -0.172 4.172 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.241 18.683 -2.656 19.876 hybrid contribution -1.239 -0.322 -0.113 1.285 sum 5.002 18.362 -2.769 19.231 Atomic orbital electron populations 1.21939 0.88501 1.06154 1.05936 1.21125 0.91723 0.81099 0.74293 1.90684 1.72044 1.31982 1.53155 1.49155 1.07962 1.05998 1.72161 1.22591 0.98514 0.79811 1.00461 1.22220 0.95268 0.93813 1.00067 0.89527 1.20939 0.87669 0.89137 0.98091 1.42703 1.10497 1.10319 1.76657 1.19000 0.96806 0.87975 1.32386 0.92635 1.25525 1.01234 0.96398 1.02515 1.69893 1.27724 1.10728 1.55372 0.85447 0.78938 0.79703 0.77954 1.20910 1.22756 1.16304 1.21016 0.94556 0.94398 0.95768 1.22513 0.81210 0.97796 0.99710 1.22286 0.94258 0.98830 1.02825 1.22762 0.97411 0.98406 0.83212 1.87901 1.48048 1.65786 1.30105 1.22713 0.87267 0.91441 1.00250 1.22120 0.98172 1.01302 0.95655 0.87844 0.88463 0.87725 0.88824 0.90332 0.95029 0.94867 0.80040 0.93488 0.90287 0.90414 0.90778 0.89591 0.92317 0.87609 0.92884 0.87682 0.90838 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.30 71.24 0.66 -2.06 16 2 C 0.53 12.97 8.02 87.66 0.70 13.67 16 3 O -0.60 -19.44 17.36 -3.04 -0.05 -19.49 16 4 N -0.62 -14.16 3.32 -808.21 -2.68 -16.85 16 5 C 0.11 2.45 6.30 86.57 0.55 3.00 16 6 C -0.09 -2.30 2.74 -10.01 -0.03 -2.33 16 7 H 0.09 2.14 7.70 -2.39 -0.02 2.12 16 8 C 0.17 5.44 4.41 86.38 0.38 5.82 16 9 N -0.76 -31.59 5.28 -343.44 -1.82 -33.40 16 10 C -0.23 -12.41 10.47 84.03 0.88 -11.53 16 11 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 12 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 13 N -0.99 -61.65 13.97 21.65 0.30 -61.35 16 14 Si 0.95 42.61 27.74 68.60 1.90 44.52 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 17 H -0.24 -9.05 6.52 99.48 0.65 -8.40 16 18 C -0.06 -1.19 0.69 -51.84 -0.04 -1.22 16 19 C 0.11 2.39 5.11 86.35 0.44 2.83 16 20 C -0.14 -3.02 3.62 30.53 0.11 -2.91 16 21 C 0.06 1.10 6.65 72.05 0.48 1.58 16 22 O -0.40 -8.96 10.75 -148.98 -1.60 -10.56 16 23 C 0.06 1.14 6.64 72.05 0.48 1.62 16 24 C -0.13 -2.72 4.68 30.56 0.14 -2.58 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 27 H 0.10 1.39 7.95 -2.38 -0.02 1.37 16 28 H 0.09 1.88 7.31 -2.39 -0.02 1.87 16 29 H 0.08 1.89 7.75 -2.39 -0.02 1.87 16 30 H 0.03 1.09 6.42 -2.39 -0.02 1.07 16 31 H 0.03 1.09 6.98 -2.38 -0.02 1.08 16 32 H 0.37 14.30 5.48 -92.71 -0.51 13.79 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.08 1.62 7.78 -2.39 -0.02 1.60 16 35 H 0.08 1.79 5.93 -2.39 -0.01 1.78 16 36 H 0.07 1.78 6.52 -2.39 -0.02 1.76 16 37 H 0.09 1.75 6.97 -2.39 -0.02 1.73 16 38 H 0.06 0.99 7.55 -2.39 -0.02 0.97 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 0.99 6.53 -2.39 -0.02 0.98 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.44 329.33 1.72 -68.72 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.44 Total: 25.75 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.23 Total: 2.67 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.20 Total: -111.60 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.65 Total: -30.06 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.90 Total: 44.52 kcal Total: -70.44 1.72 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186211149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.846 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds