Wall clock time and date at job start Tue Mar 31 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20758 * 120.00329 * 2 1 4 4 C 1.50707 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47165 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46974 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46724 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00272 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99722 * 180.02562 * 7 6 5 10 10 C 1.47019 * 125.65046 * 0.02648 * 9 7 6 11 11 C 1.54319 * 107.27271 * 178.90012 * 10 9 7 12 12 C 1.55158 * 102.94193 * 337.80471 * 11 10 9 13 13 H 1.09004 * 111.00186 * 277.43158 * 12 11 10 14 14 N 1.46502 * 111.00453 * 153.58203 * 12 11 10 15 15 C 1.46502 * 119.99782 * 301.44987 * 14 12 11 16 16 C 1.36933 * 119.99920 * 121.45552 * 14 12 11 17 17 H 1.08000 * 120.00142 * 21.71785 * 16 14 12 18 18 C 1.38810 * 119.99920 * 201.71451 * 16 14 12 19 19 N 1.31623 * 119.99840 * 13.64458 * 18 16 14 20 20 Si 1.86801 * 120.00391 * 193.64810 * 18 16 14 21 21 H 1.48501 * 109.46706 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47103 * 119.99909 * 20 18 16 23 23 H 1.48498 * 109.46971 * 240.00087 * 20 18 16 24 24 C 1.47428 * 125.64567 * 179.97438 * 9 7 6 25 25 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46945 * 299.99955 * 1 2 3 27 27 H 1.08994 * 109.47022 * 60.00039 * 1 2 3 28 28 H 1.09003 * 109.46816 * 59.99985 * 4 2 1 29 29 H 1.08995 * 109.47292 * 300.00196 * 4 2 1 30 30 H 1.08998 * 109.46578 * 59.99908 * 5 4 2 31 31 H 1.09000 * 109.46862 * 300.00084 * 5 4 2 32 32 H 1.09003 * 109.46929 * 60.00148 * 6 5 4 33 33 H 1.08995 * 109.47370 * 300.00241 * 6 5 4 34 34 H 1.08992 * 109.88469 * 59.47265 * 10 9 7 35 35 H 1.09005 * 110.01155 * 298.38577 * 10 9 7 36 36 H 1.09007 * 110.71695 * 219.44459 * 11 10 9 37 37 H 1.08994 * 110.72450 * 96.16767 * 11 10 9 38 38 H 1.09001 * 109.46646 * 94.45096 * 15 14 12 39 39 H 1.08997 * 109.46686 * 214.45445 * 15 14 12 40 40 H 1.09004 * 109.47029 * 334.45541 * 15 14 12 41 41 H 0.97001 * 119.99677 * 179.97438 * 19 18 16 42 42 H 1.08995 * 110.36791 * 85.33527 * 24 9 7 43 43 H 1.09005 * 110.36366 * 323.00489 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7648 -1.0257 -0.0002 6 6 4.5297 -2.3507 -0.0002 7 6 6.0113 -2.0753 -0.0016 8 8 6.4156 -0.9319 -0.0020 9 7 6.8871 -3.0998 -0.0024 10 6 6.5358 -4.5274 -0.0026 11 6 7.8569 -5.3244 -0.0319 12 6 8.8665 -4.3021 -0.6177 13 1 8.8099 -4.2769 -1.7060 14 7 10.2305 -4.5965 -0.1716 15 6 10.5431 -4.6247 1.2594 16 6 11.2133 -4.8453 -1.0921 17 1 11.1028 -4.4953 -2.1079 18 6 12.3515 -5.5471 -0.7198 19 7 12.3769 -6.2017 0.4218 20 14 13.8473 -5.5623 -1.8386 21 1 13.5650 -4.7561 -3.0533 22 1 15.0099 -4.9833 -1.1187 23 1 14.1557 -6.9602 -2.2336 24 6 8.3560 -2.9744 -0.0044 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9971 -1.8771 -0.8892 29 1 1.9971 -1.8764 0.8908 30 1 4.0284 -0.4535 0.8893 31 1 4.0277 -0.4547 -0.8907 32 1 4.2659 -2.9224 -0.8900 33 1 4.2667 -2.9221 0.8899 34 1 5.9412 -4.7628 -0.8852 35 1 5.9744 -4.7736 0.8987 36 1 7.7680 -6.1946 -0.6824 37 1 8.1501 -5.6223 0.9747 38 1 10.4712 -5.6484 1.6269 39 1 11.5551 -4.2520 1.4176 40 1 9.8354 -3.9947 1.7984 41 1 13.1722 -6.6925 0.6819 42 1 8.7282 -2.8590 1.0136 43 1 8.6637 -2.1291 -0.6199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188879871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:54 Heat of formation + Delta-G solvation = -57.334187 kcal Electronic energy + Delta-G solvation = -22025.660249 eV Core-core repulsion = 18685.506843 eV Total energy + Delta-G solvation = -3340.153407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98272 -39.54061 -37.50671 -34.81474 -34.41392 -31.71584 -31.01770 -29.81399 -28.68741 -27.29197 -26.08227 -23.89524 -22.38332 -21.97007 -19.87780 -19.31648 -18.85565 -17.08215 -16.90662 -16.38748 -16.05467 -15.78774 -15.22721 -15.01850 -14.69142 -14.32174 -13.77501 -13.40702 -13.36618 -12.87986 -12.79100 -12.60326 -12.51921 -12.35533 -12.06400 -12.04786 -11.81922 -11.58810 -11.32612 -10.98425 -10.93817 -10.80012 -10.51773 -10.45343 -10.23388 -9.96044 -9.90211 -9.87111 -9.54780 -8.60667 -8.32219 -6.83818 -5.78249 -3.24089 1.69245 2.84132 3.18870 3.35775 3.43652 3.45720 3.76871 4.44817 4.47978 4.67486 4.72904 4.86610 4.95653 4.99835 5.02999 5.18354 5.23028 5.31543 5.35029 5.38200 5.41835 5.52578 5.58955 5.66767 5.78032 5.90266 5.95219 6.01726 6.20198 6.29259 6.38288 6.54989 6.63998 6.78142 6.86895 7.24756 7.33790 7.67134 7.77028 7.81383 8.32225 8.40107 9.17080 9.79611 10.27593 11.26708 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047472 B = 0.002709 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.676865 B =10331.945043 C =10522.182602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.135 4.135 7 C 0.521 3.479 8 O -0.546 6.546 9 N -0.615 5.615 10 C 0.103 3.897 11 C -0.152 4.152 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.586 5.586 15 C 0.159 3.841 16 C -0.258 4.258 17 H 0.071 0.929 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.084 3.916 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.002 0.998 41 H 0.253 0.747 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.754 3.388 0.335 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.175 4.175 7 C 0.310 3.690 8 O -0.424 6.424 9 N -0.349 5.349 10 C -0.021 4.021 11 C -0.193 4.193 12 C 0.063 3.937 13 H 0.096 0.904 14 N -0.307 5.307 15 C 0.014 3.986 16 C -0.387 4.387 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.550 5.550 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C -0.040 4.040 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.078 4.513 0.418 22.538 hybrid contribution 0.732 -0.445 -0.441 0.963 sum -21.346 4.068 -0.023 21.731 Atomic orbital electron populations 1.22278 0.94670 1.04532 1.04704 1.24667 0.91845 0.90487 0.70437 1.90456 1.71879 1.35247 1.35187 1.22210 0.96698 0.97487 1.04659 1.21163 0.91459 0.96106 1.04841 1.21638 0.91974 0.99686 1.04173 1.20282 0.88086 0.84115 0.76524 1.90711 1.80238 1.20910 1.50525 1.48539 1.07712 1.06269 1.72387 1.22049 0.98794 0.80612 1.00609 1.23243 0.93747 0.99209 1.03074 1.21407 0.85221 0.89926 0.97195 0.90447 1.43836 1.02867 1.80920 1.03044 1.20835 0.97199 0.98021 0.82500 1.19272 0.97038 1.29476 0.92956 0.91151 1.25003 0.99631 0.97362 0.97565 1.70090 1.28219 1.33867 1.22861 0.86158 0.82973 0.77268 0.79977 1.20260 1.21552 1.21720 1.22957 0.77877 1.01204 1.01978 0.90030 0.89167 0.89156 0.88261 0.88270 0.90645 0.90622 0.89028 0.89075 0.91928 0.92131 0.90544 0.90573 0.95017 0.93630 0.97951 0.93722 0.91282 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.95 10.33 36.01 0.37 -0.58 16 2 C 0.35 2.90 7.27 -29.03 -0.21 2.69 16 3 O -0.45 -5.99 16.72 6.00 0.10 -5.88 16 4 C -0.17 -1.14 5.55 -27.88 -0.15 -1.29 16 5 C -0.10 -1.05 3.79 -26.73 -0.10 -1.15 16 6 C -0.13 -1.37 4.89 -27.89 -0.14 -1.51 16 7 C 0.52 8.15 7.85 -10.98 -0.09 8.06 16 8 O -0.55 -10.86 16.24 5.55 0.09 -10.77 16 9 N -0.61 -9.67 3.33 -170.52 -0.57 -10.24 16 10 C 0.10 1.32 6.49 -3.07 -0.02 1.30 16 11 C -0.15 -2.48 6.54 -24.90 -0.16 -2.64 16 12 C 0.17 3.41 3.54 -65.78 -0.23 3.18 16 13 H 0.08 1.54 7.94 -51.93 -0.41 1.13 16 14 N -0.59 -14.24 2.96 -171.03 -0.51 -14.75 16 15 C 0.16 3.80 7.82 59.85 0.47 4.27 16 16 C -0.26 -6.93 9.63 -15.06 -0.15 -7.08 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 19 N -0.91 -25.83 10.67 55.49 0.59 -25.24 16 20 Si 0.91 21.60 29.58 -169.99 -5.03 16.57 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.08 1.57 6.45 -2.53 -0.02 1.55 16 25 H 0.08 0.19 8.00 -51.93 -0.42 -0.23 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 31 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.33 7.28 -51.93 -0.38 0.96 16 38 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 39 H 0.04 1.19 7.22 -51.93 -0.38 0.81 16 40 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.07 1.36 6.03 -51.93 -0.31 1.05 16 43 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -33.67 349.53 -7.76 -41.43 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.20 Total: -3.18 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.52 Total: 6.80 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.48 Total: -50.23 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.19 Total: -16.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.67 -7.76 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188879871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.905 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds