Wall clock time and date at job start Tue Mar 31 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.44422 * 110.95624 * 2 1 4 4 C 1.53846 * 112.12292 * 215.88550 * 3 2 1 5 5 O 1.44180 * 112.88854 * 318.40026 * 4 3 2 6 6 C 1.40370 * 117.21190 * 317.88498 * 5 4 3 7 7 C 1.54278 * 108.64409 * 92.92015 * 6 5 4 8 8 C 1.54520 * 108.43610 * 47.87740 * 7 6 5 9 9 C 1.51307 * 104.16237 * 138.96681 * 8 7 6 10 10 O 1.21281 * 124.93256 * 164.08491 * 9 8 7 11 11 N 1.34424 * 110.13549 * 344.07971 * 9 8 7 12 12 C 1.46500 * 124.34611 * 179.33714 * 11 9 8 13 13 C 1.52995 * 109.47110 * 90.03119 * 12 11 9 14 14 C 1.50694 * 109.47377 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00363 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99721 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00216 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46939 * 90.00529 * 18 16 14 20 20 H 1.48497 * 109.46946 * 210.00059 * 18 16 14 21 21 H 1.48497 * 109.46917 * 330.00095 * 18 16 14 22 22 C 1.46798 * 111.30253 * 359.36636 * 11 9 8 23 23 C 1.46499 * 111.94789 * 282.96363 * 7 6 5 24 24 H 1.08992 * 109.47144 * 296.95590 * 1 2 3 25 25 H 1.09007 * 109.46733 * 56.95503 * 1 2 3 26 26 H 1.08998 * 109.46894 * 176.95105 * 1 2 3 27 27 H 1.09004 * 108.98134 * 95.20133 * 3 2 1 28 28 H 1.08999 * 108.96662 * 336.56066 * 3 2 1 29 29 H 1.09001 * 108.80225 * 197.52157 * 4 3 2 30 30 H 1.09001 * 108.71110 * 79.21922 * 4 3 2 31 31 H 1.09009 * 109.60493 * 333.17602 * 6 5 4 32 32 H 1.08999 * 109.74828 * 212.75234 * 6 5 4 33 33 H 1.09002 * 110.49818 * 257.63753 * 8 7 6 34 34 H 1.09000 * 110.49321 * 20.29892 * 8 7 6 35 35 H 1.09006 * 109.47184 * 210.03156 * 12 11 9 36 36 H 1.09002 * 109.47488 * 330.03030 * 12 11 9 37 37 H 1.09006 * 109.47127 * 300.00072 * 13 12 11 38 38 H 1.09002 * 109.47017 * 59.99623 * 13 12 11 39 39 H 0.97002 * 119.99784 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.25042 * 258.05164 * 22 11 9 41 41 H 1.09008 * 110.25332 * 136.03827 * 22 11 9 42 42 H 1.09002 * 108.92659 * 181.52312 * 23 7 6 43 43 H 1.08995 * 108.92742 * 300.19036 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9856 1.3487 0.0000 4 6 3.2711 1.4768 -0.8354 5 8 4.1763 0.3709 -0.6447 6 6 4.3533 -0.0948 0.6676 7 6 3.3581 -1.2461 0.9209 8 6 3.4362 -2.2299 -0.2680 9 6 3.3728 -3.5968 0.3777 10 8 3.1318 -4.6311 -0.2080 11 7 3.6226 -3.4984 1.6949 12 6 3.6263 -4.6323 2.6225 13 6 5.0337 -5.2279 2.6944 14 6 5.0376 -6.3938 3.6490 15 1 4.1272 -6.6817 4.1537 16 6 6.2032 -7.0940 3.8774 17 7 7.3118 -6.7439 3.2625 18 14 6.2079 -8.5398 5.0602 19 1 5.8967 -9.7877 4.3178 20 1 7.5473 -8.6596 5.6902 21 1 5.1835 -8.3214 6.1129 22 6 3.8907 -2.1086 2.0844 23 6 1.9991 -0.7530 1.1575 24 1 -0.3633 0.4658 0.9159 25 1 -0.3633 0.5604 -0.8615 26 1 -0.3633 -1.0262 -0.0547 27 1 2.1996 1.6464 1.0265 28 1 1.2291 2.0178 -0.4100 29 1 3.7803 2.3995 -0.5573 30 1 2.9992 1.5304 -1.8896 31 1 4.1627 0.7151 1.3719 32 1 5.3731 -0.4580 0.7951 33 1 2.5896 -2.0854 -0.9392 34 1 4.3761 -2.1051 -0.8056 35 1 3.3246 -4.2922 3.6132 36 1 2.9279 -5.3917 2.2708 37 1 5.3354 -5.5679 1.7036 38 1 5.7320 -4.4684 3.0460 39 1 8.1320 -7.2362 3.4234 40 1 4.9620 -1.9521 2.2107 41 1 3.3620 -1.8665 3.0064 42 1 1.3447 -1.6017 1.3569 43 1 2.0067 -0.1003 2.0304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273518323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:30 Heat of formation + Delta-G solvation = -90.885725 kcal Electronic energy + Delta-G solvation = -23361.667218 eV Core-core repulsion = 20020.058908 eV Total energy + Delta-G solvation = -3341.608310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09358 -39.98782 -37.51254 -37.23723 -35.99537 -34.41417 -31.77274 -30.30892 -29.43786 -27.91763 -27.28230 -26.23734 -24.76774 -23.25866 -21.83832 -20.76019 -20.42167 -18.68985 -17.73583 -17.46095 -17.27551 -16.80619 -16.58942 -16.31713 -15.86795 -15.67378 -15.20015 -14.99439 -14.78585 -14.50596 -14.30379 -14.20401 -14.02852 -13.80774 -13.39888 -12.90354 -12.87733 -12.71084 -12.58215 -12.46065 -12.19956 -12.03335 -12.02663 -11.84775 -11.80177 -11.44433 -11.39512 -10.73502 -10.59855 -10.29596 -9.58841 -9.27346 -8.23372 -6.36397 1.39209 1.42048 1.52585 1.63361 2.11858 2.41569 2.64265 3.10198 3.17094 3.36711 3.59481 3.73700 3.83405 4.08142 4.12906 4.25044 4.33895 4.37370 4.47568 4.53197 4.54666 4.60412 4.69495 4.72526 4.74527 4.76763 4.82009 4.87847 4.91297 5.02922 5.07862 5.08274 5.23697 5.34045 5.46583 5.60224 5.82810 6.02251 6.15433 6.17290 6.29822 6.57409 6.79139 7.23392 7.33580 8.88932 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032608 B = 0.003715 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.468460 B = 7534.501752 C = 7761.686330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.065 3.935 5 O -0.393 6.393 6 C 0.086 3.914 7 C -0.084 4.084 8 C -0.106 4.106 9 C 0.494 3.506 10 O -0.596 6.596 11 N -0.615 5.615 12 C 0.142 3.858 13 C 0.022 3.978 14 C -0.545 4.545 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.971 3.029 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.256 1.256 22 C 0.110 3.890 23 C 0.075 3.925 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.051 0.949 37 H -0.029 1.029 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 23.263 -2.953 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.273 5.273 3 C -0.108 4.108 4 C -0.011 4.011 5 O -0.312 6.312 6 C 0.008 3.992 7 C -0.086 4.086 8 C -0.146 4.146 9 C 0.284 3.716 10 O -0.478 6.478 11 N -0.347 5.347 12 C 0.021 3.979 13 C -0.016 4.016 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.203 1.203 20 H -0.205 1.205 21 H -0.180 1.180 22 C -0.012 4.012 23 C -0.052 4.052 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.069 0.931 37 H -0.011 1.011 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.655 22.364 -3.778 25.501 hybrid contribution 0.057 -0.827 1.189 1.449 sum -11.598 21.537 -2.589 24.598 Atomic orbital electron populations 1.22449 0.85513 1.02311 1.01476 1.61171 1.08748 1.14738 1.42655 1.22588 0.98187 0.89704 1.00343 1.23216 0.88551 0.88231 1.01112 1.87443 1.63922 1.52102 1.27705 1.22459 0.97462 0.94153 0.85133 1.21030 0.97779 0.96232 0.93528 1.22073 1.05417 0.88616 0.98464 1.21921 0.74791 0.91943 0.82930 1.90643 1.52333 1.36511 1.68311 1.48603 1.68229 1.09302 1.08535 1.21378 0.97805 0.86495 0.92237 1.19232 0.92727 0.95160 0.94493 1.21554 0.95972 1.14923 1.25901 0.91451 1.26032 0.95043 1.00668 0.98050 1.70124 1.00765 1.42173 1.44228 0.85361 0.77910 0.78476 0.78773 1.20338 1.20463 1.17971 1.22340 1.01859 0.78536 0.98502 1.20907 0.93965 0.98426 0.91939 0.94503 0.89945 0.92300 0.93009 0.88533 0.91119 0.89220 0.90502 0.89127 0.87643 0.88157 0.88783 0.93069 1.01077 0.97850 0.92696 0.90243 0.87912 0.92016 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.26 127.69 1.18 1.58 16 2 N -0.55 -8.89 4.06 -936.78 -3.80 -12.70 16 3 C 0.02 0.23 5.16 87.05 0.45 0.68 16 4 C 0.07 0.86 7.01 72.27 0.51 1.37 16 5 O -0.39 -7.86 9.28 -143.82 -1.33 -9.19 16 6 C 0.09 1.52 5.15 72.42 0.37 1.89 16 7 C -0.08 -1.81 0.62 -52.79 -0.03 -1.84 16 8 C -0.11 -3.14 5.29 30.56 0.16 -2.98 16 9 C 0.49 20.14 8.02 87.91 0.71 20.85 16 10 O -0.60 -30.68 17.60 -3.03 -0.05 -30.73 16 11 N -0.61 -22.98 2.93 -818.18 -2.40 -25.38 16 12 C 0.14 6.23 5.87 86.38 0.51 6.74 16 13 C 0.02 1.21 5.30 29.84 0.16 1.37 16 14 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 15 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 18 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 22 C 0.11 2.81 6.47 86.77 0.56 3.38 16 23 C 0.07 1.34 3.77 84.10 0.32 1.66 16 24 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.08 0.86 7.96 -2.38 -0.02 0.85 16 26 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 27 H 0.05 0.50 6.74 -2.38 -0.02 0.49 16 28 H 0.10 0.75 7.51 -2.39 -0.02 0.74 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 0.96 7.17 -2.38 -0.02 0.95 16 32 H 0.09 1.68 7.53 -2.39 -0.02 1.67 16 33 H 0.11 3.15 7.48 -2.39 -0.02 3.13 16 34 H 0.10 3.06 7.51 -2.39 -0.02 3.04 16 35 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 36 H 0.05 2.42 7.93 -2.39 -0.02 2.40 16 37 H -0.03 -1.90 8.14 -2.38 -0.02 -1.91 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.08 2.03 7.38 -2.39 -0.02 2.01 16 41 H 0.10 2.07 7.92 -2.38 -0.02 2.05 16 42 H 0.06 1.31 7.80 -2.39 -0.02 1.29 16 43 H 0.07 0.90 7.41 -2.39 -0.02 0.89 16 Total: -1.00 -78.22 337.79 1.28 -76.94 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.98 Total: 8.55 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.58 Total: 3.65 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -5.92 Total: -96.19 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.39 Total: -39.92 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.22 1.28 -76.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273518323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.946 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds