Wall clock time and date at job start Tue Mar 31 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46200 * 118.77326 * 2 1 4 4 C 1.52600 * 109.84837 * 162.27344 * 3 2 1 5 5 C 1.53762 * 110.28013 * 169.92883 * 4 3 2 6 6 C 1.54505 * 104.88627 * 119.18891 * 5 4 3 7 7 N 1.48602 * 104.61191 * 23.76701 * 6 5 4 8 8 C 1.46896 * 111.00464 * 201.22390 * 7 6 5 9 9 C 1.52996 * 109.47317 * 174.69045 * 8 7 6 10 10 C 1.53001 * 109.47016 * 174.74318 * 9 8 7 11 11 C 1.50707 * 109.46873 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99596 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99558 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00281 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47051 * 89.99796 * 15 13 11 17 17 H 1.48501 * 109.47182 * 209.99903 * 15 13 11 18 18 H 1.48498 * 109.46947 * 329.99671 * 15 13 11 19 19 C 1.48676 * 104.29825 * 320.82721 * 7 6 5 20 20 O 1.42564 * 109.98301 * 48.08036 * 4 3 2 21 21 C 1.43040 * 113.17296 * 293.10184 * 20 4 3 22 22 C 1.33841 * 118.77724 * 180.26952 * 2 1 3 23 23 O 1.21275 * 118.69476 * 2.43142 * 22 2 1 24 24 H 1.09007 * 109.46787 * 179.73129 * 1 2 3 25 25 H 1.08998 * 109.47316 * 299.72967 * 1 2 3 26 26 H 1.08998 * 109.46839 * 59.73479 * 1 2 3 27 27 H 1.09001 * 109.39487 * 282.60046 * 3 2 1 28 28 H 1.09008 * 109.39200 * 42.31125 * 3 2 1 29 29 H 1.09001 * 110.35228 * 238.03552 * 5 4 3 30 30 H 1.08992 * 110.35786 * 0.33154 * 5 4 3 31 31 H 1.08998 * 110.41085 * 142.55615 * 6 5 4 32 32 H 1.09007 * 110.40263 * 264.87141 * 6 5 4 33 33 H 1.09004 * 109.47053 * 294.69396 * 8 7 6 34 34 H 1.09004 * 109.47189 * 54.68808 * 8 7 6 35 35 H 1.09001 * 109.47252 * 294.74473 * 9 8 7 36 36 H 1.09000 * 109.47069 * 54.74528 * 9 8 7 37 37 H 1.08998 * 109.47176 * 299.99646 * 10 9 8 38 38 H 1.08993 * 109.47101 * 59.99802 * 10 9 8 39 39 H 0.97000 * 120.00066 * 180.02562 * 14 13 11 40 40 H 1.08999 * 110.42835 * 280.27928 * 19 7 6 41 41 H 1.08994 * 110.43117 * 157.77994 * 19 7 6 42 42 H 1.08999 * 109.40615 * 288.51219 * 21 20 4 43 43 H 1.08998 * 109.32882 * 168.72727 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1688 1.2815 0.0000 4 6 3.6166 1.0775 0.4370 5 6 4.4299 2.3612 0.2026 6 6 4.9301 2.7757 1.6044 7 7 4.9232 1.5160 2.3926 8 6 4.8824 1.7968 3.8339 9 6 4.7430 0.4832 4.6057 10 6 4.8320 0.7621 6.1075 11 6 4.6953 -0.5320 6.8677 12 1 4.5590 -1.4604 6.3332 13 6 4.7454 -0.5306 8.2455 14 7 4.6266 -1.6599 8.9089 15 14 4.9819 1.0753 9.1700 16 1 3.6565 1.6764 9.4651 17 1 5.7008 0.8127 10.4426 18 1 5.7765 2.0135 8.3372 19 6 3.6893 0.8136 1.9515 20 8 4.1933 -0.0110 -0.2805 21 6 3.6081 -1.2744 0.0473 22 6 2.1094 -1.1731 -0.0055 23 8 1.4581 -2.1949 -0.0555 24 1 -0.3633 -1.0277 -0.0048 25 1 -0.3634 0.5096 0.8924 26 1 -0.3633 0.5179 -0.8876 27 1 2.1464 1.7067 -1.0034 28 1 1.6765 1.9647 0.6922 29 1 5.2741 2.1600 -0.4570 30 1 3.7953 3.1404 -0.2193 31 1 5.9404 3.1803 1.5433 32 1 4.2546 3.5074 2.0480 33 1 5.8032 2.2978 4.1326 34 1 4.0306 2.4402 4.0547 35 1 3.7792 0.0280 4.3772 36 1 5.5439 -0.1963 4.3142 37 1 5.7958 1.2171 6.3359 38 1 4.0312 1.4415 6.3989 39 1 4.6614 -1.6589 9.8783 40 1 2.8151 1.2294 2.4525 41 1 3.7691 -0.2555 2.1480 42 1 3.9160 -1.5666 1.0512 43 1 3.9456 -2.0247 -0.6677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274045424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:43 Heat of formation + Delta-G solvation = -64.384425 kcal Electronic energy + Delta-G solvation = -23154.897412 eV Core-core repulsion = 19814.438285 eV Total energy + Delta-G solvation = -3340.459128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36469 -39.18634 -37.10395 -35.69729 -34.32427 -32.49602 -30.86612 -29.53023 -28.76456 -27.41600 -26.01454 -25.46545 -22.97631 -21.36253 -21.10950 -19.90660 -18.88727 -17.88104 -17.02076 -16.73031 -16.48611 -16.00768 -15.60358 -15.20608 -14.77538 -14.26090 -14.17817 -13.94418 -13.81272 -13.43035 -13.14390 -12.86504 -12.72214 -12.51650 -12.31803 -12.10115 -11.92561 -11.79628 -11.61766 -11.48316 -11.09315 -10.90693 -10.70445 -10.46742 -9.99529 -9.74757 -9.61563 -9.55463 -9.18851 -9.06173 -8.54288 -8.43664 -6.04224 -4.02360 2.29080 2.56926 3.29221 3.33533 3.36887 3.40135 3.78191 4.12000 4.24418 4.34385 4.44475 4.49007 4.81774 4.94547 5.03024 5.04712 5.06047 5.17184 5.26486 5.29252 5.30315 5.36936 5.47488 5.56459 5.58223 5.58913 5.59503 5.83375 5.85155 6.00921 6.07530 6.41060 6.49677 6.63708 6.77265 6.94217 7.06206 7.09419 7.29459 7.42098 7.79144 7.80325 8.54268 9.00995 9.58023 11.09377 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.004118 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.345360 B = 6797.387618 C = 7553.851556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.098 3.902 4 C 0.096 3.904 5 C -0.105 4.105 6 C 0.030 3.970 7 N -0.502 5.502 8 C 0.042 3.958 9 C -0.100 4.100 10 C -0.012 4.012 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.009 3.991 20 O -0.349 6.349 21 C 0.045 3.955 22 C 0.490 3.510 23 O -0.542 6.542 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.017 0.983 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 10.789 -21.107 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.026 4.026 4 C 0.055 3.945 5 C -0.144 4.144 6 C -0.098 4.098 7 N -0.225 5.225 8 C -0.086 4.086 9 C -0.138 4.138 10 C -0.050 4.050 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.120 4.120 20 O -0.267 6.267 21 C -0.034 4.034 22 C 0.278 3.722 23 O -0.420 6.420 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.985 9.886 -21.160 23.693 hybrid contribution -0.929 1.299 1.108 1.944 sum -4.914 11.185 -20.052 23.480 Atomic orbital electron populations 1.21781 0.79038 1.04797 1.01426 1.47372 1.07576 1.05980 1.73368 1.22191 0.92106 0.85591 1.02691 1.22233 0.91155 0.89238 0.91827 1.22261 1.00309 0.93418 0.98379 1.23193 1.01736 0.92407 0.92501 1.65521 1.34485 1.16978 1.05559 1.22531 1.00711 0.99347 0.85972 1.21493 1.01219 0.94612 0.96448 1.19541 0.96217 0.97659 0.91580 1.21131 1.49743 0.93496 0.91400 0.91073 1.25040 0.94642 0.96124 0.97721 1.69919 1.50877 1.25908 1.07568 0.86769 0.78596 0.84525 0.79327 1.20404 1.21355 1.19021 1.23723 0.93180 1.01996 0.93063 1.88136 1.60342 1.13982 1.64282 1.22887 0.87537 0.87889 1.05095 1.21074 0.91968 0.83289 0.75897 1.90729 1.67417 1.33942 1.49893 0.88959 0.91888 0.92127 0.90389 0.89514 0.88805 0.89931 0.89471 0.93582 0.90549 0.95095 0.93226 0.91761 0.96510 0.97358 0.92746 0.92587 0.88978 0.88160 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.59 59.85 0.63 1.29 16 2 N -0.61 -6.58 3.20 -182.49 -0.58 -7.17 16 3 C 0.10 0.83 5.15 -4.41 -0.02 0.81 16 4 C 0.10 0.98 1.04 -89.96 -0.09 0.89 16 5 C -0.11 -0.88 6.44 -25.55 -0.16 -1.05 16 6 C 0.03 0.30 6.51 -2.09 -0.01 0.29 16 7 N -0.50 -6.81 5.45 -230.06 -1.25 -8.06 16 8 C 0.04 0.66 4.93 -3.83 -0.02 0.64 16 9 C -0.10 -1.97 4.86 -26.73 -0.13 -2.10 16 10 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 11 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 15 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 19 C 0.01 0.11 4.16 -2.37 -0.01 0.10 16 20 O -0.35 -4.06 10.31 -35.23 -0.36 -4.42 16 21 C 0.04 0.52 6.39 35.82 0.23 0.74 16 22 C 0.49 6.43 7.42 -11.59 -0.09 6.34 16 23 O -0.54 -8.87 16.11 5.56 0.09 -8.78 16 24 H 0.09 1.00 6.71 -51.92 -0.35 0.65 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.09 0.62 7.84 -51.92 -0.41 0.21 16 29 H 0.09 0.81 7.98 -51.93 -0.41 0.39 16 30 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.43 7.89 -51.92 -0.41 0.02 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.46 7.97 -51.93 -0.41 0.05 16 35 H 0.05 0.98 7.22 -51.93 -0.37 0.61 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 41 H 0.09 1.31 5.32 -51.93 -0.28 1.04 16 42 H 0.10 1.19 6.34 -51.93 -0.33 0.86 16 43 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -33.96 334.36 -8.26 -42.22 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.07 Total: -2.61 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.22 Total: -5.92 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -1.06 Total: -42.64 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.27 Total: -13.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.96 -8.26 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274045424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.161 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds