Wall clock time and date at job start Tue Mar 31 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 N 1.46495 * 109.40953 * 178.67665 * 12 11 10 14 14 C 1.34770 * 120.00287 * 275.12349 * 13 12 11 15 15 O 1.21589 * 120.00257 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00135 * 180.02562 * 14 13 12 17 17 C 1.46491 * 120.00195 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.28786 * 32.86950 * 17 16 14 19 19 C 1.54257 * 110.32706 * 154.99654 * 17 16 14 20 20 C 1.54377 * 105.06529 * 118.89247 * 19 17 16 21 21 N 1.48562 * 104.59159 * 23.85438 * 20 19 17 22 22 C 1.48561 * 104.22276 * 320.52057 * 21 20 19 23 23 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 24 24 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 25 25 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 27 27 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 28 28 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 29 29 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 30 30 H 1.09005 * 109.43378 * 58.75628 * 12 11 10 31 31 H 0.97003 * 119.99326 * 95.12590 * 13 12 11 32 32 H 0.97003 * 119.99957 * 359.97438 * 16 14 13 33 33 H 1.09000 * 110.32868 * 237.79330 * 19 17 16 34 34 H 1.09005 * 110.32270 * 359.89589 * 19 17 16 35 35 H 1.09004 * 110.41227 * 142.63046 * 20 19 17 36 36 H 1.08995 * 110.41335 * 265.07537 * 20 19 17 37 37 H 1.00902 * 111.00414 * 200.95993 * 21 20 19 38 38 H 1.09008 * 110.40576 * 280.70398 * 22 21 20 39 39 H 1.08998 * 110.41403 * 158.26292 * 22 21 20 40 40 H 1.09002 * 109.49898 * 301.42152 * 23 12 11 41 41 H 1.09001 * 109.50239 * 181.32239 * 23 12 11 42 42 H 1.08997 * 109.58712 * 353.38030 * 24 9 7 43 43 H 1.09003 * 109.58223 * 113.65521 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 7 1.0498 -5.6284 2.9618 14 6 0.8490 -6.9480 2.7758 15 8 0.4764 -7.3597 1.6941 16 7 1.0603 -7.8113 3.7890 17 6 0.8426 -9.2458 3.5866 18 1 1.0858 -9.5239 2.5611 19 6 1.6949 -10.0625 4.5796 20 6 0.6759 -10.8589 5.4225 21 7 -0.5312 -10.9511 4.5615 22 6 -0.6197 -9.6175 3.9130 23 6 0.5025 -3.3049 2.4290 24 6 0.2288 -2.3345 1.2757 25 1 -0.4849 0.8401 0.0004 26 1 1.0455 -4.0685 -0.8288 27 1 2.7374 -3.5171 -0.7513 28 1 2.3168 -5.6021 0.5989 29 1 2.9115 -4.2421 1.5822 30 1 -0.0202 -5.0362 1.2582 31 1 1.3467 -5.2999 3.8249 32 1 1.3572 -7.4829 4.6521 33 1 2.3552 -10.7428 4.0417 34 1 2.2767 -9.3960 5.2165 35 1 1.0614 -11.8540 5.6446 36 1 0.4454 -10.3251 6.3445 37 1 -1.3549 -11.1406 5.1126 38 1 -1.0531 -8.8894 4.5988 39 1 -1.2098 -9.6779 2.9985 40 1 1.3517 -2.9474 3.0114 41 1 -0.3777 -3.3669 3.0689 42 1 0.1000 -1.3262 1.6692 43 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350322607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:13 Heat of formation + Delta-G solvation = -5.395772 kcal Electronic energy + Delta-G solvation = -22565.518737 eV Core-core repulsion = 19259.910301 eV Total energy + Delta-G solvation = -3305.608437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20928 -38.58536 -37.24560 -34.35996 -34.02238 -32.04145 -30.23957 -29.87741 -29.33253 -27.99522 -24.91934 -22.48602 -22.15943 -21.88024 -20.87883 -20.57233 -19.44448 -18.16539 -17.23702 -16.66699 -16.04575 -15.45875 -15.11094 -14.78100 -14.23228 -14.06766 -13.89646 -13.67903 -13.52405 -13.02361 -12.94156 -12.64627 -12.49440 -12.30989 -11.81393 -11.75797 -11.43694 -11.16530 -11.10213 -10.84194 -10.70222 -10.48775 -10.25481 -10.03008 -9.99327 -9.73355 -9.53060 -9.21591 -8.97157 -8.60035 -8.42624 -6.67708 -5.78957 -3.20140 2.75504 3.35343 3.37389 3.44654 3.47025 3.96481 4.29587 4.36863 4.46043 4.50261 4.72406 4.98774 5.11099 5.32082 5.35070 5.40709 5.43405 5.52473 5.59120 5.62887 5.77416 5.78246 5.91682 6.10384 6.16745 6.31114 6.37678 6.50849 6.55843 6.60703 6.62897 6.82371 6.88405 6.92320 7.00968 7.12490 7.33343 7.63065 7.80142 8.14992 8.45255 8.76521 9.21592 9.85160 10.42232 11.30099 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.051483 B = 0.002964 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.738229 B = 9445.268402 C = 9502.863040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.588 6.588 16 N -0.747 5.747 17 C 0.161 3.839 18 H 0.101 0.899 19 C -0.132 4.132 20 C 0.034 3.966 21 N -0.665 5.665 22 C 0.024 3.976 23 C -0.146 4.146 24 C 0.174 3.826 25 H 0.254 0.746 26 H 0.021 0.979 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.390 0.610 32 H 0.392 0.608 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.338 0.662 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -17.708 13.670 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.401 3.599 15 O -0.466 6.466 16 N -0.403 5.403 17 C 0.054 3.946 18 H 0.119 0.881 19 C -0.171 4.171 20 C -0.095 4.095 21 N -0.294 5.294 22 C -0.107 4.107 23 C -0.186 4.186 24 C 0.048 3.952 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.226 0.774 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.154 0.846 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.359 -18.304 12.045 21.954 hybrid contribution 0.355 1.773 1.677 2.467 sum 1.714 -16.531 13.722 21.553 Atomic orbital electron populations 1.70034 1.05253 1.25476 1.54026 1.25042 0.95281 0.98417 1.01020 0.86292 0.79181 0.83736 0.77642 1.21453 1.21587 1.20475 1.19192 0.92750 0.84837 1.41284 0.91653 1.44100 1.35868 1.01526 1.50085 1.20877 0.97862 0.86508 0.92733 1.22441 0.97205 0.99501 0.98801 1.20977 0.98327 0.87667 0.86571 1.45560 1.72671 1.04932 1.16065 1.16057 0.78437 0.81346 0.84072 1.90926 1.53345 1.77545 1.24749 1.45313 1.74550 1.06437 1.14036 1.21430 0.93457 0.78651 1.01046 0.88118 1.22626 0.97863 0.98820 0.97771 1.22924 0.91667 1.00420 0.94516 1.63697 1.05815 1.29184 1.30745 1.23410 0.97767 0.89547 0.99997 1.22534 1.00428 0.94735 1.00862 1.20743 0.88915 0.97995 0.87577 0.93633 0.96148 0.92632 0.92660 0.92506 0.90076 0.77702 0.77386 0.89844 0.90588 0.89898 0.94098 0.84645 0.93690 0.89324 0.92258 0.92816 0.89036 0.96077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.92 3.00 -172.31 -0.52 -15.44 16 10 C 0.15 3.22 6.50 -3.71 -0.02 3.19 16 11 C -0.14 -2.60 5.68 -26.45 -0.15 -2.75 16 12 C 0.17 2.98 2.42 -67.73 -0.16 2.81 16 13 N -0.74 -10.44 5.08 -58.48 -0.30 -10.74 16 14 C 0.70 10.45 8.53 -86.92 -0.74 9.71 16 15 O -0.59 -11.36 15.66 5.29 0.08 -11.28 16 16 N -0.75 -7.87 5.07 -57.33 -0.29 -8.16 16 17 C 0.16 1.64 3.41 -66.56 -0.23 1.41 16 18 H 0.10 1.28 7.56 -51.93 -0.39 0.89 16 19 C -0.13 -0.96 6.76 -25.35 -0.17 -1.13 16 20 C 0.03 0.23 7.47 -2.18 -0.02 0.21 16 21 N -0.67 -5.52 7.62 -109.66 -0.84 -6.36 16 22 C 0.02 0.23 7.18 -2.18 -0.02 0.22 16 23 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 24 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 25 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 31 H 0.39 4.35 8.62 -40.82 -0.35 4.00 16 32 H 0.39 2.99 8.37 -40.82 -0.34 2.65 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.45 7.67 -51.93 -0.40 0.05 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.34 2.26 8.92 -39.29 -0.35 1.90 16 38 H 0.04 0.43 8.06 -51.92 -0.42 0.02 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -32.15 340.18 -10.19 -42.35 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.15 Total: 5.63 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.91 Total: 7.85 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -1.32 Total: -66.21 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.15 -10.19 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350322607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.950 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds