Wall clock time and date at job start Tue Mar 31 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.47092 * 60.00077 * 3 2 1 7 7 C 1.37875 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99972 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99942 * 169.99729 * 10 9 7 12 12 C 1.53239 * 109.34007 * 187.25208 * 11 10 9 13 13 N 1.47077 * 108.52279 * 306.17426 * 12 11 10 14 14 C 1.34774 * 120.87928 * 231.18454 * 13 12 11 15 15 O 1.21588 * 120.00294 * 184.97167 * 14 13 12 16 16 N 1.34774 * 120.00099 * 4.97873 * 14 13 12 17 17 C 1.46499 * 120.00088 * 175.00045 * 16 14 13 18 18 C 1.53007 * 109.47258 * 184.89001 * 17 16 14 19 19 N 1.46903 * 115.54498 * 83.78845 * 18 17 16 20 20 C 1.52995 * 117.51701 * 229.48512 * 18 17 16 21 21 C 1.52996 * 117.49816 * 298.11505 * 18 17 16 22 22 C 1.47075 * 118.23736 * 51.45378 * 13 12 11 23 23 C 1.46897 * 110.99781 * 294.30399 * 10 9 7 24 24 H 0.97010 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47163 * 59.99782 * 9 7 2 26 26 H 1.08997 * 109.46998 * 299.99498 * 9 7 2 27 27 H 1.08999 * 109.49143 * 67.29385 * 11 10 9 28 28 H 1.09001 * 109.49621 * 307.21915 * 11 10 9 29 29 H 1.08997 * 109.62824 * 186.46129 * 12 11 10 30 30 H 1.09002 * 109.62686 * 65.88524 * 12 11 10 31 31 H 0.96998 * 119.99897 * 354.99813 * 16 14 13 32 32 H 1.09010 * 109.47249 * 64.89212 * 17 16 14 33 33 H 1.08998 * 109.47611 * 304.89337 * 17 16 14 34 34 H 1.00904 * 111.00127 * 29.42755 * 19 18 17 35 35 H 1.00897 * 110.99698 * 153.38257 * 19 18 17 36 36 H 1.09004 * 117.49520 * 214.96867 * 20 18 17 37 37 H 1.08997 * 117.50686 * 359.97438 * 20 18 17 38 38 H 1.08995 * 117.50361 * 359.97438 * 21 18 17 39 39 H 1.09006 * 117.49147 * 144.99374 * 21 18 17 40 40 H 1.09002 * 109.62905 * 68.25301 * 22 13 12 41 41 H 1.09004 * 109.62982 * 188.83468 * 22 13 12 42 42 H 1.09003 * 109.48954 * 292.70203 * 23 10 9 43 43 H 1.08994 * 109.49880 * 52.75449 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0032 0.4115 13 7 3.4615 -5.9862 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 4.5253 -7.1001 -2.3537 16 7 3.0602 -8.2521 -1.1456 17 6 3.2499 -9.4474 -1.9712 18 6 2.3123 -10.5555 -1.4875 19 7 0.9424 -10.5015 -2.0153 20 6 2.9200 -11.9376 -1.2398 21 6 2.4986 -11.0639 -0.0565 22 6 4.0836 -4.7090 -1.1338 23 6 2.9767 -3.6491 -1.2493 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.8795 -5.1263 -0.6111 28 1 0.9159 -4.8190 1.1422 29 1 2.0631 -6.9694 0.4740 30 1 3.1393 -5.8265 1.3201 31 1 2.4657 -8.2811 -0.3797 32 1 4.2833 -9.7848 -1.8901 33 1 3.0258 -9.2101 -3.0111 34 1 0.9243 -10.0794 -2.9316 35 1 0.5249 -11.4199 -2.0319 36 1 2.3032 -12.8068 -1.4683 37 1 3.9879 -12.0579 -1.4218 38 1 3.2894 -10.6094 0.5402 39 1 1.6046 -11.3583 0.4933 40 1 4.8026 -4.4103 -0.3709 41 1 4.5885 -4.8192 -2.0936 42 1 2.3147 -3.8993 -2.0785 43 1 3.4267 -2.6721 -1.4253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357679318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:12 Heat of formation + Delta-G solvation = 14.580258 kcal Electronic energy + Delta-G solvation = -22549.358421 eV Core-core repulsion = 19244.616210 eV Total energy + Delta-G solvation = -3304.742211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28515 -38.75124 -37.45815 -34.42227 -34.05342 -32.35035 -31.35482 -30.66566 -28.49392 -26.83014 -25.27726 -23.14816 -22.87897 -22.08533 -20.68505 -20.27456 -19.13085 -17.96368 -16.59805 -16.31458 -16.21078 -15.92336 -15.27320 -14.81709 -14.50223 -14.27974 -14.12495 -13.87850 -13.77558 -13.49571 -13.35043 -12.62199 -12.46821 -12.17852 -11.98679 -11.93816 -11.70765 -11.26956 -11.11467 -10.82897 -10.76436 -10.70835 -10.57649 -10.49111 -9.97884 -9.83207 -9.24801 -9.13892 -8.82675 -8.47167 -8.28517 -7.29624 -6.04933 -4.06517 2.66043 3.30557 3.33640 3.38177 3.39938 3.43004 3.88401 4.02722 4.22773 4.39061 4.40818 4.59988 4.82789 5.20472 5.25606 5.26477 5.30462 5.39863 5.41283 5.43607 5.51720 5.52786 5.69168 5.73491 5.86437 5.96744 6.07530 6.24271 6.43923 6.46663 6.58787 6.67926 6.72421 6.96742 7.10732 7.24492 7.30768 7.76478 8.02759 8.05498 8.14866 8.49798 8.70965 9.01236 9.58116 11.05965 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.036014 B = 0.003195 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.283377 B = 8760.985716 C = 9151.456535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.624 5.624 14 C 0.707 3.293 15 O -0.600 6.600 16 N -0.743 5.743 17 C 0.179 3.821 18 C 0.040 3.960 19 N -0.806 5.806 20 C -0.203 4.203 21 C -0.165 4.165 22 C 0.133 3.867 23 C 0.051 3.949 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.350 0.650 35 H 0.345 0.655 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.024 0.976 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -22.290 -1.192 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.408 3.592 15 O -0.480 6.480 16 N -0.402 5.402 17 C 0.053 3.947 18 C -0.054 4.054 19 N -0.336 5.336 20 C -0.243 4.243 21 C -0.203 4.203 22 C 0.010 3.990 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.237 0.763 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.042 0.958 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.165 -21.582 -0.882 21.998 hybrid contribution -0.366 0.112 -0.917 0.994 sum 3.799 -21.471 -1.800 21.878 Atomic orbital electron populations 1.69969 1.06093 1.26716 1.51010 1.24994 0.94864 0.99373 0.95389 0.86442 0.80114 0.83378 0.77495 1.19587 1.21127 1.21026 1.21187 0.93556 0.89855 1.50055 0.91705 1.19730 0.90012 0.87243 0.96157 1.62073 1.27882 1.02475 1.33584 1.22372 0.94748 0.90880 1.00859 1.21767 0.91848 0.98310 0.88579 1.47387 1.49469 1.07852 1.31371 1.15824 0.81099 0.80242 0.81991 1.90882 1.38073 1.84783 1.34215 1.45163 1.50749 1.10150 1.34116 1.20599 0.97197 0.82341 0.94523 1.21644 0.89748 0.94283 0.99760 1.58474 1.15809 1.27636 1.31646 1.23659 1.02161 0.94241 1.04226 1.23153 1.03423 1.02874 0.90891 1.21829 0.95348 0.80557 1.01225 1.22450 0.95195 0.99169 0.91018 0.92956 0.99136 0.95062 0.95495 0.90147 0.91154 0.90696 0.76312 0.91068 0.91191 0.83588 0.84164 0.88548 0.88331 0.88166 0.88211 0.91179 0.89420 0.95762 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 9 C 0.19 4.94 4.72 -4.97 -0.02 4.92 16 10 N -0.53 -11.19 4.62 -235.47 -1.09 -12.28 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.64 6.59 -3.60 -0.02 1.62 16 13 N -0.62 -9.80 3.00 -177.91 -0.53 -10.34 16 14 C 0.71 11.22 8.31 -86.92 -0.72 10.50 16 15 O -0.60 -11.50 15.83 5.29 0.08 -11.42 16 16 N -0.74 -8.90 5.41 -65.22 -0.35 -9.25 16 17 C 0.18 1.81 5.73 -4.04 -0.02 1.79 16 18 C 0.04 0.31 2.82 -131.60 -0.37 -0.06 16 19 N -0.81 -5.89 9.85 0.74 0.01 -5.88 16 20 C -0.20 -1.28 9.87 -26.73 -0.26 -1.54 16 21 C -0.17 -1.17 9.90 -26.73 -0.26 -1.44 16 22 C 0.13 2.26 6.61 -3.37 -0.02 2.23 16 23 C 0.05 0.99 5.47 -3.46 -0.02 0.98 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 26 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 29 H 0.07 0.77 5.63 -51.93 -0.29 0.48 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.24 5.79 -40.82 -0.24 4.01 16 32 H 0.07 0.74 7.92 -51.92 -0.41 0.32 16 33 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 34 H 0.35 2.46 8.72 -39.29 -0.34 2.12 16 35 H 0.34 1.91 8.75 -39.29 -0.34 1.57 16 36 H 0.10 0.50 8.07 -51.93 -0.42 0.09 16 37 H 0.10 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -32.22 345.35 -9.99 -42.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.89 Total: 4.23 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.14 Total: 6.84 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -1.23 Total: -63.48 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.22 -9.99 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357679318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.787 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds