Wall clock time and date at job start Tue Mar 31 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00200 * 2 1 4 4 C 1.53000 * 109.46888 * 184.87672 * 3 2 1 5 5 C 1.50695 * 115.56736 * 332.23836 * 4 3 2 6 6 O 1.21274 * 120.00254 * 246.37791 * 5 4 3 7 7 N 1.34775 * 120.00051 * 66.37294 * 5 4 3 8 8 C 1.46505 * 119.99927 * 5.39288 * 7 5 4 9 9 C 1.46497 * 120.00391 * 185.39631 * 7 5 4 10 10 C 1.53007 * 109.47300 * 97.71338 * 9 7 5 11 11 H 1.08999 * 112.96137 * 47.65505 * 10 9 7 12 12 C 1.53950 * 113.76792 * 179.33407 * 10 9 7 13 13 C 1.53950 * 86.28800 * 137.90640 * 12 10 9 14 14 N 1.47582 * 113.76782 * 275.97353 * 10 9 7 15 15 C 1.36940 * 134.49331 * 41.07214 * 14 10 9 16 16 H 1.08000 * 119.99843 * 9.15294 * 15 14 10 17 17 C 1.38812 * 120.00004 * 189.15384 * 15 14 10 18 18 N 1.31612 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47379 * 60.00642 * 19 17 15 21 21 H 1.48504 * 109.46996 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47333 * 300.00299 * 19 17 15 23 23 C 1.53008 * 117.49374 * 186.54759 * 4 3 2 24 24 C 1.53005 * 60.03191 * 252.52465 * 23 4 3 25 25 H 1.09001 * 109.47052 * 300.00082 * 1 2 3 26 26 H 1.09006 * 109.46980 * 60.00333 * 1 2 3 27 27 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46988 * 64.87956 * 3 2 1 29 29 H 1.09002 * 109.47004 * 304.87942 * 3 2 1 30 30 H 1.08997 * 109.46876 * 83.65459 * 8 7 5 31 31 H 1.08999 * 109.47107 * 203.65599 * 8 7 5 32 32 H 1.09002 * 109.46870 * 323.65770 * 8 7 5 33 33 H 1.08998 * 109.47789 * 217.71679 * 9 7 5 34 34 H 1.09002 * 109.46901 * 337.71775 * 9 7 5 35 35 H 1.08996 * 113.73641 * 252.25032 * 12 10 9 36 36 H 1.08992 * 113.74270 * 23.45545 * 12 10 9 37 37 H 1.09001 * 113.76544 * 90.69385 * 13 12 10 38 38 H 1.08991 * 113.76701 * 221.97575 * 13 12 10 39 39 H 0.96999 * 120.00209 * 179.97438 * 18 17 15 40 40 H 1.08994 * 117.49421 * 145.02726 * 23 4 3 41 41 H 1.09000 * 117.50014 * 0.02562 * 23 4 3 42 42 H 1.09003 * 117.50000 * 107.47850 * 24 23 4 43 43 H 1.08999 * 117.49626 * 252.47809 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1866 -0.1226 5 6 4.1298 -0.0843 0.4221 6 8 4.8565 -0.0450 1.3922 7 7 3.8579 -1.2647 -0.1688 8 6 3.0777 -1.3009 -1.4083 9 6 4.3425 -2.5116 0.4282 10 6 3.2238 -3.1501 1.2541 11 1 2.2734 -3.1919 0.7222 12 6 3.6236 -4.4813 1.9160 13 6 2.8800 -3.9694 3.1630 14 7 3.1156 -2.6132 2.6246 15 6 3.2003 -1.3620 3.1746 16 1 3.2383 -0.4925 2.5351 17 6 3.2374 -1.2112 4.5540 18 7 3.1917 -2.2709 5.3332 19 14 3.3537 0.4956 5.3041 20 1 2.1779 1.3009 4.8869 21 1 3.3780 0.3849 6.7848 22 1 4.5982 1.1578 4.8372 23 6 4.3527 2.4700 0.0132 24 6 4.1908 1.8074 -1.3565 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.7595 1.8148 0.9305 29 1 1.6212 1.8764 -0.8431 30 1 3.7369 -1.1225 -2.2579 31 1 2.6067 -2.2783 -1.5128 32 1 2.3091 -0.5287 -1.3765 33 1 4.6481 -3.1980 -0.3614 34 1 5.1943 -2.2982 1.0740 35 1 3.1614 -5.3555 1.4575 36 1 4.6981 -4.5948 2.0595 37 1 1.8276 -4.2514 3.1935 38 1 3.4015 -4.1704 4.0988 39 1 3.2180 -2.1656 6.2971 40 1 5.3268 2.3949 0.4964 41 1 3.8104 3.3987 0.1903 42 1 3.5415 2.3001 -2.0803 43 1 5.0584 1.2968 -1.7743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691050506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:40 Heat of formation + Delta-G solvation = 32.615671 kcal Electronic energy + Delta-G solvation = -24673.956613 eV Core-core repulsion = 21337.703725 eV Total energy + Delta-G solvation = -3336.252888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.00436 -37.97730 -37.28042 -35.99173 -34.61225 -31.82076 -28.67744 -27.91232 -27.54194 -26.05846 -25.33819 -23.27820 -23.04525 -22.43364 -21.09167 -18.81893 -18.15165 -17.02686 -16.62553 -16.32730 -15.67687 -15.36146 -15.08045 -14.69579 -14.26405 -14.14468 -13.58432 -13.44251 -13.05912 -12.64352 -12.58545 -12.27155 -11.90766 -11.77074 -11.52157 -11.34145 -11.21730 -10.97467 -10.83442 -10.65325 -10.54128 -10.45918 -10.38639 -10.19499 -9.73327 -9.48747 -9.30938 -9.08415 -8.88019 -8.41051 -7.77029 -6.50838 -5.41039 -2.71449 3.21205 3.58402 3.61205 3.63533 3.69600 3.71199 3.91364 4.73374 4.80744 4.84336 5.02373 5.12882 5.27624 5.37477 5.43627 5.53392 5.57298 5.67306 5.70672 5.74582 5.79917 5.84926 5.87257 5.89323 5.93149 6.07949 6.16028 6.18809 6.20663 6.42404 6.52945 6.57766 6.87328 6.95841 7.24314 7.28949 7.50708 7.71154 7.94424 8.14849 8.37025 9.00550 9.44289 10.08790 10.94096 11.76110 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.008730 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.189943 B = 3206.481209 C = 3976.693617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.101 3.899 4 C -0.152 4.152 5 C 0.553 3.447 6 O -0.504 6.504 7 N -0.594 5.594 8 C 0.070 3.930 9 C 0.116 3.884 10 C 0.131 3.869 11 H 0.042 0.958 12 C -0.160 4.160 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.180 4.180 16 H 0.091 0.909 17 C -0.020 4.020 18 N -0.934 5.934 19 Si 0.901 3.099 20 H -0.293 1.293 21 H -0.296 1.296 22 H -0.283 1.283 23 C -0.143 4.143 24 C -0.160 4.160 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.080 0.920 39 H 0.246 0.754 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 4.458 -17.232 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.024 3.976 4 C -0.155 4.155 5 C 0.339 3.661 6 O -0.378 6.378 7 N -0.326 5.326 8 C -0.073 4.073 9 C -0.007 4.007 10 C 0.023 3.977 11 H 0.059 0.941 12 C -0.199 4.199 13 C 0.023 3.977 14 N -0.319 5.319 15 C -0.308 4.308 16 H 0.109 0.891 17 C -0.214 4.214 18 N -0.584 5.584 19 Si 0.733 3.267 20 H -0.221 1.221 21 H -0.222 1.222 22 H -0.209 1.209 23 C -0.180 4.180 24 C -0.197 4.197 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.390 4.545 -16.430 17.213 hybrid contribution -0.501 1.093 0.470 1.291 sum -2.892 5.638 -15.960 17.171 Atomic orbital electron populations 1.22717 0.81512 1.02922 0.99483 1.88146 1.19292 1.26208 1.94142 1.21869 0.89390 0.85748 1.00550 1.21455 0.94077 0.95333 1.04653 1.18915 0.81071 0.83273 0.82880 1.90798 1.36365 1.85932 1.24745 1.47339 1.54149 1.05872 1.25289 1.22155 0.96168 1.04124 0.84829 1.21864 0.98835 0.83898 0.96149 1.22595 0.95075 0.91162 0.88891 0.94105 1.23790 1.00767 0.95382 0.99960 1.22345 0.95372 0.84051 0.95931 1.46014 1.82321 1.03173 1.00373 1.19324 1.38819 0.82793 0.89818 0.89145 1.24689 1.04076 0.96504 0.96109 1.69802 1.59260 1.26754 1.02632 0.86313 0.77965 0.84798 0.77576 1.22060 1.22207 1.20947 1.23005 1.01868 0.94333 0.98782 1.23155 1.02770 1.02982 0.90821 0.93949 0.94576 0.89560 0.92245 0.92732 0.94939 0.92258 0.87938 0.92226 0.89143 0.93487 0.90874 0.96501 0.90198 0.94416 0.87450 0.88110 0.88183 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.36 -5.63 6.03 -35.23 -0.21 -5.84 16 3 C 0.10 1.43 5.69 37.16 0.21 1.64 16 4 C -0.15 -2.35 1.49 -155.62 -0.23 -2.58 16 5 C 0.55 11.10 5.13 -10.99 -0.06 11.05 16 6 O -0.50 -12.66 13.56 5.56 0.08 -12.59 16 7 N -0.59 -10.79 2.63 -181.57 -0.48 -11.26 16 8 C 0.07 0.97 9.27 59.85 0.56 1.52 16 9 C 0.12 2.26 5.37 -4.04 -0.02 2.23 16 10 C 0.13 2.80 4.52 -66.86 -0.30 2.50 16 11 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -3.22 7.86 -25.79 -0.20 -3.42 16 13 C 0.15 3.73 7.76 -2.85 -0.02 3.70 16 14 N -0.59 -16.01 3.57 -169.72 -0.61 -16.62 16 15 C -0.18 -5.38 9.46 -15.06 -0.14 -5.52 16 16 H 0.09 2.72 4.51 -52.49 -0.24 2.49 16 17 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 18 N -0.93 -29.89 11.28 55.49 0.63 -29.26 16 19 Si 0.90 24.88 29.55 -169.99 -5.02 19.86 16 20 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 22 H -0.28 -7.91 7.11 56.52 0.40 -7.51 16 23 C -0.14 -1.91 9.77 -26.72 -0.26 -2.18 16 24 C -0.16 -1.82 9.72 -26.69 -0.26 -2.08 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 32 H 0.10 1.38 3.82 -53.54 -0.20 1.18 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.09 2.08 7.15 -51.93 -0.37 1.71 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 2.24 6.81 -51.93 -0.35 1.88 16 39 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.11 1.61 8.01 -51.93 -0.42 1.20 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -36.69 340.67 -7.23 -43.92 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.03 Total: -0.99 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 0.28 Total: 7.64 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.46 Total: -57.14 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.14 Total: -18.43 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.02 Total: 19.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.69 -7.23 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691050506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.539 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds