Wall clock time and date at job start Tue Mar 31 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00200 * 2 1 4 4 C 1.53000 * 109.46888 * 184.87672 * 3 2 1 5 5 C 1.50695 * 115.56736 * 332.23836 * 4 3 2 6 6 O 1.21274 * 120.00254 * 246.37791 * 5 4 3 7 7 N 1.34775 * 120.00051 * 66.37294 * 5 4 3 8 8 C 1.46505 * 119.99927 * 5.39288 * 7 5 4 9 9 C 1.46497 * 120.00391 * 185.39631 * 7 5 4 10 10 C 1.53007 * 109.47300 * 97.71338 * 9 7 5 11 11 H 1.08999 * 112.96137 * 47.65505 * 10 9 7 12 12 C 1.53950 * 113.76792 * 179.33407 * 10 9 7 13 13 C 1.53950 * 86.28800 * 137.90640 * 12 10 9 14 14 N 1.47582 * 113.76782 * 275.97353 * 10 9 7 15 15 C 1.36940 * 134.49331 * 41.07214 * 14 10 9 16 16 H 1.08000 * 119.99843 * 9.15294 * 15 14 10 17 17 C 1.38812 * 120.00004 * 189.15384 * 15 14 10 18 18 N 1.31612 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47379 * 60.00642 * 19 17 15 21 21 H 1.48504 * 109.46996 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47333 * 300.00299 * 19 17 15 23 23 C 1.53008 * 117.49374 * 186.54759 * 4 3 2 24 24 C 1.53005 * 60.03191 * 252.52465 * 23 4 3 25 25 H 1.09001 * 109.47052 * 300.00082 * 1 2 3 26 26 H 1.09006 * 109.46980 * 60.00333 * 1 2 3 27 27 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46988 * 64.87956 * 3 2 1 29 29 H 1.09002 * 109.47004 * 304.87942 * 3 2 1 30 30 H 1.08997 * 109.46876 * 83.65459 * 8 7 5 31 31 H 1.08999 * 109.47107 * 203.65599 * 8 7 5 32 32 H 1.09002 * 109.46870 * 323.65770 * 8 7 5 33 33 H 1.08998 * 109.47789 * 217.71679 * 9 7 5 34 34 H 1.09002 * 109.46901 * 337.71775 * 9 7 5 35 35 H 1.08996 * 113.73641 * 252.25032 * 12 10 9 36 36 H 1.08992 * 113.74270 * 23.45545 * 12 10 9 37 37 H 1.09001 * 113.76544 * 90.69385 * 13 12 10 38 38 H 1.08991 * 113.76701 * 221.97575 * 13 12 10 39 39 H 0.96999 * 120.00209 * 179.97438 * 18 17 15 40 40 H 1.08994 * 117.49421 * 145.02726 * 23 4 3 41 41 H 1.09000 * 117.50014 * 0.02562 * 23 4 3 42 42 H 1.09003 * 117.50000 * 107.47850 * 24 23 4 43 43 H 1.08999 * 117.49626 * 252.47809 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1866 -0.1226 5 6 4.1298 -0.0843 0.4221 6 8 4.8565 -0.0450 1.3922 7 7 3.8579 -1.2647 -0.1688 8 6 3.0777 -1.3009 -1.4083 9 6 4.3425 -2.5116 0.4282 10 6 3.2238 -3.1501 1.2541 11 1 2.2734 -3.1919 0.7222 12 6 3.6236 -4.4813 1.9160 13 6 2.8800 -3.9694 3.1630 14 7 3.1156 -2.6132 2.6246 15 6 3.2003 -1.3620 3.1746 16 1 3.2383 -0.4925 2.5351 17 6 3.2374 -1.2112 4.5540 18 7 3.1917 -2.2709 5.3332 19 14 3.3537 0.4956 5.3041 20 1 2.1779 1.3009 4.8869 21 1 3.3780 0.3849 6.7848 22 1 4.5982 1.1578 4.8372 23 6 4.3527 2.4700 0.0132 24 6 4.1908 1.8074 -1.3565 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.7595 1.8148 0.9305 29 1 1.6212 1.8764 -0.8431 30 1 3.7369 -1.1225 -2.2579 31 1 2.6067 -2.2783 -1.5128 32 1 2.3091 -0.5287 -1.3765 33 1 4.6481 -3.1980 -0.3614 34 1 5.1943 -2.2982 1.0740 35 1 3.1614 -5.3555 1.4575 36 1 4.6981 -4.5948 2.0595 37 1 1.8276 -4.2514 3.1935 38 1 3.4015 -4.1704 4.0988 39 1 3.2180 -2.1656 6.2971 40 1 5.3268 2.3949 0.4964 41 1 3.8104 3.3987 0.1903 42 1 3.5415 2.3001 -2.0803 43 1 5.0584 1.2968 -1.7743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691050506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:39 Heat of formation + Delta-G solvation = 6.998351 kcal Electronic energy + Delta-G solvation = -24675.067464 eV Core-core repulsion = 21337.703725 eV Total energy + Delta-G solvation = -3337.363738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34475 -39.60930 -38.64547 -37.17519 -36.13110 -34.06356 -30.14654 -29.64154 -29.04913 -27.29983 -26.38196 -25.17607 -24.84204 -23.38259 -22.56889 -20.74547 -19.46679 -18.67180 -18.24466 -17.50359 -16.96903 -16.79827 -16.61060 -16.27979 -15.89030 -15.65669 -15.31772 -14.87067 -14.54952 -14.27802 -13.74696 -13.54055 -13.33538 -13.11690 -13.03611 -12.92309 -12.84539 -12.61095 -12.44221 -12.38684 -12.33016 -12.02495 -11.69704 -11.58467 -11.41255 -11.27126 -11.09314 -10.73999 -10.53437 -10.23233 -9.25957 -8.66097 -7.74445 -5.03081 1.31625 1.38691 1.46423 1.83463 2.33123 2.54380 2.60837 2.85509 3.41700 3.48810 3.74015 3.84952 3.98416 4.02438 4.04358 4.34635 4.36603 4.47065 4.51284 4.54674 4.56437 4.65154 4.70788 4.71380 4.74641 4.85605 4.90292 4.93012 4.95614 5.01764 5.08937 5.19151 5.19933 5.39841 5.47840 5.74211 5.81866 5.94264 6.13713 6.24851 6.74656 7.13001 7.55908 7.80684 8.72937 9.42353 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.008730 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.189943 B = 3206.481209 C = 3976.693617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.387 6.387 3 C 0.104 3.896 4 C -0.180 4.180 5 C 0.541 3.459 6 O -0.574 6.574 7 N -0.594 5.594 8 C 0.066 3.934 9 C 0.121 3.879 10 C 0.135 3.865 11 H 0.056 0.944 12 C -0.130 4.130 13 C 0.137 3.863 14 N -0.624 5.624 15 C -0.162 4.162 16 H 0.087 0.913 17 C -0.088 4.088 18 N -0.965 5.965 19 Si 0.951 3.049 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.294 1.294 23 C -0.155 4.155 24 C -0.116 4.116 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.042 0.958 39 H 0.237 0.763 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 4.914 -21.296 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.306 6.306 3 C 0.028 3.972 4 C -0.183 4.183 5 C 0.330 3.670 6 O -0.453 6.453 7 N -0.325 5.325 8 C -0.075 4.075 9 C -0.004 4.004 10 C 0.028 3.972 11 H 0.074 0.926 12 C -0.169 4.169 13 C 0.012 3.988 14 N -0.349 5.349 15 C -0.292 4.292 16 H 0.104 0.896 17 C -0.278 4.278 18 N -0.618 5.618 19 Si 0.783 3.217 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.192 4.192 24 C -0.153 4.153 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.160 0.840 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.583 4.988 -20.579 21.475 hybrid contribution -0.141 0.900 1.600 1.841 sum -3.725 5.888 -18.979 20.217 Atomic orbital electron populations 1.22832 0.80164 1.03222 1.00593 1.88088 1.20885 1.27287 1.94350 1.21949 0.88429 0.85533 1.01302 1.21466 0.94932 0.93606 1.08285 1.19800 0.80041 0.85170 0.82021 1.90755 1.39519 1.87156 1.27907 1.47522 1.53831 1.04890 1.26241 1.22405 0.96531 1.05196 0.83344 1.21673 0.96484 0.85457 0.96747 1.22792 0.96201 0.91191 0.86977 0.92638 1.23530 1.00403 0.96472 0.96501 1.22346 0.95579 0.84179 0.96696 1.46407 1.82254 1.02760 1.03484 1.19535 1.35534 0.84300 0.89781 0.89576 1.25350 1.06178 0.99272 0.96988 1.69977 1.61871 1.27937 1.02026 0.85497 0.77607 0.81825 0.76765 1.20829 1.22078 1.22187 1.23088 1.00608 0.94668 1.00844 1.23300 1.02163 1.00071 0.89778 0.95448 0.90785 0.89743 0.94703 0.88027 0.92236 0.91127 0.87117 0.87761 0.93478 0.88832 0.90853 0.96536 0.93914 0.95375 0.90260 0.85749 0.83973 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.39 -11.21 6.03 -148.98 -0.90 -12.11 16 3 C 0.10 2.68 5.69 71.98 0.41 3.09 16 4 C -0.18 -5.21 1.49 -52.90 -0.08 -5.29 16 5 C 0.54 21.63 5.13 87.66 0.45 22.08 16 6 O -0.57 -30.04 13.56 -3.01 -0.04 -30.08 16 7 N -0.59 -20.53 2.63 -846.76 -2.22 -22.75 16 8 C 0.07 1.56 9.27 127.77 1.18 2.74 16 9 C 0.12 4.51 5.37 86.38 0.46 4.98 16 10 C 0.13 5.57 4.52 45.10 0.20 5.77 16 11 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 12 C -0.13 -5.00 7.86 31.25 0.25 -4.75 16 13 C 0.14 6.99 7.76 86.44 0.67 7.66 16 14 N -0.62 -34.15 3.57 -690.87 -2.47 -36.62 16 15 C -0.16 -10.02 9.46 84.03 0.79 -9.22 16 16 H 0.09 5.37 4.51 -2.91 -0.01 5.36 16 17 C -0.09 -5.68 5.50 84.86 0.47 -5.21 16 18 N -0.96 -64.43 11.28 21.65 0.24 -64.19 16 19 Si 0.95 53.40 29.55 68.60 2.03 55.42 16 20 H -0.28 -15.00 7.11 99.48 0.71 -14.30 16 21 H -0.29 -16.26 7.11 99.48 0.71 -15.55 16 22 H -0.29 -16.86 7.11 99.48 0.71 -16.15 16 23 C -0.15 -3.93 9.77 30.60 0.30 -3.64 16 24 C -0.12 -2.19 9.72 30.62 0.30 -1.89 16 25 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.62 7.87 -2.39 -0.02 1.60 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 32 H 0.11 2.51 3.82 -27.86 -0.11 2.41 16 33 H 0.10 2.95 8.13 -2.39 -0.02 2.93 16 34 H 0.05 2.20 7.15 -2.39 -0.02 2.18 16 35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.04 2.49 6.81 -2.39 -0.02 2.47 16 39 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.08 2.45 8.01 -2.39 -0.02 2.43 16 41 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.14 1.53 8.03 -2.39 -0.02 1.51 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -86.55 340.67 4.18 -82.37 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.89 Total: 9.76 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.66 Total: 18.19 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -4.45 Total: -123.56 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.94 Total: -42.18 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.03 Total: 55.42 kcal Total: -86.55 4.18 -82.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691050506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.368 kcal (2) G-P(sol) polarization free energy of solvation -86.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds