Wall clock time and date at job start Tue Mar 31 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 H 1.09001 * 109.47088 * 24.37780 * 3 2 1 5 5 C 1.50698 * 109.47229 * 144.37707 * 3 2 1 6 6 O 1.21275 * 120.00298 * 3.53494 * 5 3 2 7 7 N 1.34783 * 119.99941 * 183.53059 * 5 3 2 8 8 C 1.46496 * 119.99905 * 184.99684 * 7 5 3 9 9 C 1.52996 * 109.47102 * 185.01592 * 8 7 5 10 10 H 1.09002 * 110.00307 * 305.52092 * 9 8 7 11 11 C 1.54325 * 109.88279 * 66.62071 * 9 8 7 12 12 C 1.55155 * 102.94867 * 141.60811 * 11 9 8 13 13 C 1.54911 * 101.58095 * 324.49914 * 12 11 9 14 14 N 1.47020 * 109.88469 * 184.42374 * 9 8 7 15 15 C 1.36939 * 125.64921 * 61.60912 * 14 9 8 16 16 H 1.08002 * 119.99738 * 9.29593 * 15 14 9 17 17 C 1.38808 * 120.00327 * 189.29564 * 15 14 9 18 18 N 1.31621 * 120.00262 * 12.55216 * 17 15 14 19 19 Si 1.86799 * 120.00191 * 192.54970 * 17 15 14 20 20 H 1.48506 * 109.47176 * 5.00530 * 19 17 15 21 21 H 1.48494 * 109.47387 * 125.00804 * 19 17 15 22 22 H 1.48501 * 109.47358 * 245.00981 * 19 17 15 23 23 C 1.52995 * 109.47281 * 264.38080 * 3 2 1 24 24 C 1.52998 * 117.49854 * 8.43982 * 23 3 2 25 25 C 1.52994 * 117.49866 * 299.81698 * 23 3 2 26 26 H 1.09005 * 109.47001 * 183.47301 * 1 2 3 27 27 H 1.09003 * 109.47053 * 303.46688 * 1 2 3 28 28 H 1.08999 * 109.47672 * 63.47056 * 1 2 3 29 29 H 0.97004 * 120.00049 * 5.00791 * 7 5 3 30 30 H 1.09000 * 109.47117 * 65.01847 * 8 7 5 31 31 H 1.09001 * 109.47830 * 305.02150 * 8 7 5 32 32 H 1.09007 * 110.72180 * 23.24006 * 11 9 8 33 33 H 1.08999 * 110.71747 * 259.97746 * 11 9 8 34 34 H 1.08996 * 111.00701 * 206.42080 * 12 11 9 35 35 H 1.09003 * 110.99835 * 82.56695 * 12 11 9 36 36 H 1.08996 * 110.36681 * 155.84498 * 13 12 11 37 37 H 1.08997 * 110.36218 * 278.06323 * 13 12 11 38 38 H 0.96994 * 120.00262 * 180.02562 * 18 17 15 39 39 H 1.09003 * 115.55293 * 154.14968 * 23 3 2 40 40 H 1.08999 * 117.50185 * 359.97438 * 24 23 3 41 41 H 1.09008 * 117.50049 * 145.02360 * 24 23 3 42 42 H 1.09001 * 117.50290 * 214.97817 * 25 23 3 43 43 H 1.09006 * 117.50024 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3029 2.0181 0.4242 5 6 3.2696 1.2945 0.8275 6 8 3.6683 0.2564 1.3114 7 7 3.9530 2.4385 1.0298 8 6 5.2336 2.4108 1.7407 9 6 5.7351 3.8419 1.9441 10 1 5.7780 4.3615 0.9868 11 6 4.7950 4.5953 2.9086 12 6 5.7764 5.4492 3.7543 13 6 6.9953 4.5001 3.8687 14 7 7.0689 3.8213 2.5620 15 6 8.1935 3.2633 2.0149 16 1 8.1828 2.9210 0.9906 17 6 9.3470 3.1376 2.7767 18 7 9.2985 3.3195 4.0793 19 14 10.9683 2.7103 1.9531 20 1 10.7818 2.6775 0.4802 21 1 11.9852 3.7350 2.3006 22 1 11.4267 1.3785 2.4237 23 6 2.3467 1.7139 -1.4355 24 6 1.8462 0.8091 -2.5632 25 6 3.3339 0.8357 -2.2069 26 1 -0.3633 -1.0258 0.0623 27 1 -0.3633 0.5667 0.8573 28 1 -0.3634 0.4590 -0.9194 29 1 3.5967 3.2802 0.7049 30 1 5.9622 1.8504 1.1549 31 1 5.1008 1.9311 2.7104 32 1 4.2495 3.8949 3.5411 33 1 4.1063 5.2339 2.3555 34 1 5.3576 5.6675 4.7366 35 1 6.0442 6.3679 3.2324 36 1 7.9053 5.0716 4.0511 37 1 6.8374 3.7745 4.6665 38 1 10.1046 3.2320 4.6116 39 1 2.3733 2.7870 -1.6250 40 1 1.2775 -0.0774 -2.2824 41 1 1.5432 1.2869 -3.4950 42 1 4.0096 1.3309 -2.9042 43 1 3.7433 -0.0334 -1.6918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691076606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:54 Heat of formation + Delta-G solvation = -30.422863 kcal Electronic energy + Delta-G solvation = -22916.462405 eV Core-core repulsion = 19577.475961 eV Total energy + Delta-G solvation = -3338.986444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.10586 -38.27322 -37.36031 -36.01713 -34.16979 -32.47824 -30.10101 -29.31825 -28.13145 -26.25194 -24.79192 -23.72425 -22.47506 -21.53028 -20.35441 -19.91330 -19.44041 -17.36854 -17.13785 -16.52962 -16.44644 -15.51295 -14.96133 -14.74910 -14.59571 -14.42338 -14.00721 -13.77533 -13.41118 -13.05266 -12.73332 -12.13239 -12.01956 -11.89007 -11.71550 -11.54201 -11.49924 -11.35865 -10.90841 -10.81112 -10.71251 -10.56021 -10.25827 -10.08190 -9.98347 -9.94190 -9.85899 -9.68615 -9.23651 -8.62537 -8.56409 -6.87931 -5.77468 -3.09682 2.81841 3.06409 3.40335 3.46871 3.48945 3.55529 4.04443 4.44748 4.50248 4.72020 4.75995 4.99999 5.06987 5.14786 5.20510 5.23676 5.34060 5.38899 5.46105 5.49834 5.55748 5.59428 5.76118 5.80162 5.97823 6.05491 6.12056 6.12445 6.22808 6.43724 6.53913 6.61234 6.71223 6.78708 6.89245 7.07453 7.48162 7.57895 7.77642 7.81930 8.22513 8.52705 9.16325 9.78597 10.44356 11.35619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.004181 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.412359 B = 6695.270971 C = 7393.572466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.101 3.899 4 H 0.088 0.912 5 C 0.511 3.489 6 O -0.523 6.523 7 N -0.719 5.719 8 C 0.110 3.890 9 C 0.153 3.847 10 H 0.038 0.962 11 C -0.126 4.126 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.234 4.234 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.913 5.913 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C -0.183 4.183 24 C -0.166 4.166 25 C -0.164 4.164 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.394 0.606 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.253 0.747 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 1.355 -9.342 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.039 3.961 4 H 0.106 0.894 5 C 0.295 3.705 6 O -0.398 6.398 7 N -0.372 5.372 8 C -0.014 4.014 9 C 0.044 3.956 10 H 0.056 0.944 11 C -0.164 4.164 12 C -0.186 4.186 13 C 0.047 3.953 14 N -0.313 5.313 15 C -0.362 4.362 16 H 0.095 0.905 17 C -0.200 4.200 18 N -0.559 5.559 19 Si 0.739 3.261 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.202 4.202 24 C -0.203 4.203 25 C -0.201 4.201 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.227 0.773 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.402 0.361 -8.904 19.551 hybrid contribution 0.492 0.345 -0.497 0.780 sum -16.910 0.707 -9.401 19.361 Atomic orbital electron populations 1.22920 0.80921 1.03063 1.00089 1.88036 1.19418 1.25177 1.94551 1.21448 0.94417 0.86577 0.93609 0.89424 1.20244 0.85065 0.84349 0.80837 1.90727 1.68492 1.31487 1.49099 1.46008 1.23511 1.08769 1.58863 1.22249 0.82109 1.00582 0.96500 1.21118 0.87066 0.91768 0.95632 0.94401 1.22615 0.97113 0.98486 0.98198 1.22980 0.98321 0.98773 0.98528 1.21420 0.94391 0.92246 0.87274 1.44566 1.02471 1.65340 1.18879 1.19029 0.87585 1.34336 0.95257 0.90474 1.24806 0.98549 1.01339 0.95310 1.69990 1.27349 1.54977 1.03629 0.86105 0.83785 0.77587 0.78628 1.20389 1.21634 1.21717 1.22700 1.07756 0.98056 0.91704 1.22940 0.97940 1.01815 0.97634 1.22925 0.92336 1.02192 1.02635 0.89331 0.93865 0.93691 0.77266 0.91551 0.91604 0.91806 0.92389 0.92293 0.92268 0.91402 0.95425 0.93678 0.86551 0.87949 0.88903 0.88616 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.20 101.05 1.03 1.26 16 2 O -0.35 -4.67 8.55 -55.12 -0.47 -5.15 16 3 C 0.10 1.21 2.98 -27.89 -0.08 1.13 16 4 H 0.09 0.80 7.68 -51.93 -0.40 0.40 16 5 C 0.51 8.30 6.83 -10.98 -0.08 8.23 16 6 O -0.52 -11.20 16.48 -14.32 -0.24 -11.43 16 7 N -0.72 -10.75 5.29 -60.30 -0.32 -11.07 16 8 C 0.11 2.14 5.12 -4.05 -0.02 2.12 16 9 C 0.15 2.97 3.19 -66.95 -0.21 2.76 16 10 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.13 -2.06 6.20 -24.90 -0.15 -2.22 16 12 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 13 C 0.17 4.07 5.42 -2.52 -0.01 4.05 16 14 N -0.59 -14.54 3.13 -162.57 -0.51 -15.05 16 15 C -0.23 -6.41 9.71 -15.06 -0.15 -6.56 16 16 H 0.08 2.07 7.86 -52.49 -0.41 1.66 16 17 C 0.00 -0.08 5.36 -17.43 -0.09 -0.17 16 18 N -0.91 -26.72 10.78 55.49 0.60 -26.12 16 19 Si 0.91 22.13 29.57 -169.99 -5.03 17.10 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.18 -1.87 5.79 -90.63 -0.53 -2.39 16 24 C -0.17 -1.56 9.48 -26.73 -0.25 -1.82 16 25 C -0.16 -1.90 9.80 -26.73 -0.26 -2.16 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.33 8.02 -51.93 -0.42 -0.08 16 28 H 0.04 0.31 7.44 -51.93 -0.39 -0.08 16 29 H 0.39 4.53 8.40 -40.82 -0.34 4.19 16 30 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 31 H 0.07 1.45 7.99 -51.93 -0.42 1.03 16 32 H 0.06 1.05 7.78 -51.93 -0.40 0.64 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.78 6.99 -51.93 -0.36 1.42 16 37 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.01 6.25 -51.93 -0.32 0.68 16 41 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -33.27 348.23 -8.93 -42.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.23 Total: 2.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.98 Total: 1.41 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.23 Total: -52.24 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.71 Total: -16.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.27 -8.93 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691076606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.780 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds