Wall clock time and date at job start Tue Mar 31 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99569 * 2 1 4 4 C 1.50706 * 109.47155 * 293.95319 * 3 2 1 5 5 H 1.07999 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99609 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00364 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99674 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46987 * 59.99847 * 8 6 4 10 10 H 1.48498 * 109.46795 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46754 * 299.99794 * 8 6 4 12 12 C 1.46897 * 111.00139 * 123.95189 * 2 1 3 13 13 C 1.53002 * 109.46648 * 66.04815 * 12 2 1 14 14 H 1.08993 * 109.47651 * 304.99918 * 13 12 2 15 15 O 1.42900 * 109.47265 * 65.00347 * 13 12 2 16 16 C 1.52998 * 109.46901 * 184.99850 * 13 12 2 17 17 N 1.46902 * 109.47421 * 180.02562 * 16 13 12 18 18 C 1.46895 * 111.00209 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.47315 * 180.02562 * 18 17 16 20 20 C 1.34669 * 126.59585 * 95.16173 * 19 18 17 21 21 N 1.34133 * 108.02235 * 180.28483 * 20 19 18 22 22 C 1.30502 * 109.25197 * 359.73051 * 21 20 19 23 23 N 1.35041 * 108.70384 * 0.02562 * 22 21 20 24 24 C 1.46499 * 126.39764 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.47071 * 296.04241 * 1 2 3 26 26 H 1.08996 * 109.47695 * 56.04930 * 1 2 3 27 27 H 1.09006 * 109.47084 * 176.04873 * 1 2 3 28 28 H 1.08999 * 109.47232 * 53.95525 * 3 2 1 29 29 H 1.09001 * 109.47349 * 173.95658 * 3 2 1 30 30 H 0.97003 * 120.00159 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47407 * 306.05093 * 12 2 1 32 32 H 1.08993 * 109.47001 * 186.04258 * 12 2 1 33 33 H 0.96698 * 114.00315 * 59.99113 * 15 13 12 34 34 H 1.09001 * 109.47363 * 59.99856 * 16 13 12 35 35 H 1.09006 * 109.47075 * 300.00164 * 16 13 12 36 36 H 1.00895 * 111.00290 * 56.04349 * 17 16 13 37 37 H 1.09000 * 109.47453 * 59.99508 * 18 17 16 38 38 H 1.09006 * 109.46924 * 299.99746 * 18 17 16 39 39 H 1.07993 * 125.98713 * 0.05405 * 20 19 18 40 40 H 1.07998 * 125.64430 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47391 * 90.01916 * 24 23 22 42 42 H 1.09001 * 109.46813 * 330.01972 * 24 23 22 43 43 H 1.09004 * 109.47041 * 210.02099 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5114 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7134 4.0013 -0.6158 8 14 1.5824 4.1870 -3.1381 9 1 0.1051 4.2244 -3.2847 10 1 2.1146 5.5733 -3.1381 11 1 2.1733 3.4294 -4.2704 12 6 1.9955 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0700 -3.0198 2.2130 17 7 1.7212 -4.4377 2.0522 18 6 2.1277 -5.2167 3.2294 19 6 1.7549 -6.6629 3.0280 20 6 2.5526 -7.6393 2.5549 21 7 1.8425 -8.7768 2.5236 22 6 0.6367 -8.5435 2.9649 23 7 0.5409 -7.2372 3.2933 24 6 -0.6425 -6.5600 3.8291 25 1 -0.3633 0.4512 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 1.5610 1.9273 0.8309 29 1 3.0797 1.3445 0.1082 30 1 2.9880 4.9174 -0.7778 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1755 33 1 3.2602 -2.7165 -0.1361 34 1 1.5635 -2.6179 3.0905 35 1 3.1484 -2.9235 2.3400 36 1 2.1269 -4.8167 1.2097 37 1 1.6209 -4.8302 4.1136 38 1 3.2063 -5.1353 3.3641 39 1 3.5824 -7.5254 2.2501 40 1 -0.1539 -9.2741 3.0520 41 1 -0.6278 -6.6095 4.9179 42 1 -1.5417 -7.0498 3.4553 43 1 -0.6387 -5.5169 3.5127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352067607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:35 Heat of formation + Delta-G solvation = 19.369459 kcal Electronic energy + Delta-G solvation = -21780.655393 eV Core-core repulsion = 18476.120858 eV Total energy + Delta-G solvation = -3304.534536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.28191 -38.40909 -36.18695 -35.10082 -34.16878 -32.54135 -31.17491 -29.23074 -27.24212 -27.14093 -26.33591 -24.73023 -23.09697 -21.65629 -21.36198 -20.27769 -20.09787 -17.43336 -16.62750 -16.31871 -16.07310 -15.96418 -15.13478 -14.96612 -14.66804 -14.44242 -14.18964 -14.04792 -13.65908 -13.41372 -13.27196 -13.05312 -12.96385 -12.51470 -12.30519 -12.02652 -11.89306 -11.35196 -11.13228 -10.89895 -10.79011 -10.68218 -10.31067 -10.17670 -10.03959 -9.81097 -9.65297 -9.15398 -8.79901 -8.51953 -8.44003 -7.21562 -6.03386 -4.04446 1.74991 2.55791 2.94262 3.33933 3.37465 3.41174 3.94316 4.40902 4.42428 4.45950 4.49735 4.64014 4.77736 4.81453 4.94213 5.07545 5.13643 5.15227 5.24673 5.27452 5.33716 5.47241 5.52253 5.60866 5.68764 6.02695 6.11588 6.17360 6.29624 6.37881 6.48985 6.70746 6.76157 6.94972 7.16212 7.25467 7.31014 7.79138 7.84906 7.93280 8.08758 8.19021 8.54296 9.03281 9.59780 11.07547 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.042469 B = 0.002511 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.143341 B =11150.032051 C =11201.314742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.115 3.885 14 H 0.103 0.897 15 O -0.546 6.546 16 C 0.027 3.973 17 N -0.683 5.683 18 C 0.133 3.867 19 C -0.018 4.018 20 C -0.023 4.023 21 N -0.495 5.495 22 C 0.178 3.822 23 N -0.449 5.449 24 C 0.070 3.930 25 H 0.008 0.992 26 H 0.075 0.925 27 H 0.047 0.953 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.367 0.633 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.354 0.646 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.167 0.833 40 H 0.204 0.796 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 -20.206 11.724 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.055 3.945 14 H 0.121 0.879 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.317 5.317 18 C 0.003 3.997 19 C -0.133 4.133 20 C -0.172 4.172 21 N -0.213 5.213 22 C -0.104 4.104 23 N -0.132 5.132 24 C -0.072 4.072 25 H 0.027 0.973 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.174 0.826 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.184 0.816 40 H 0.220 0.780 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.880 -20.948 11.147 24.226 hybrid contribution 0.669 1.887 0.440 2.050 sum -4.212 -19.061 11.587 22.701 Atomic orbital electron populations 1.22260 0.88981 0.99601 1.00407 1.62027 1.06846 1.17441 1.39090 1.19738 0.95245 0.81597 0.96623 1.21134 1.34766 0.96875 1.01697 0.91839 1.24994 0.95303 0.97349 0.97030 1.69945 1.38421 1.11511 1.34172 0.86545 0.78708 0.78272 0.83799 1.20280 1.21384 1.20100 1.22710 1.00434 0.93827 0.93476 1.21981 0.98247 0.90716 0.83595 0.87945 1.86621 1.22870 1.83777 1.41655 1.22711 0.98818 0.88584 1.00174 1.60414 1.64473 1.01921 1.04844 1.20233 0.98766 0.86205 0.94538 1.21099 0.86600 0.96333 1.09301 1.22097 1.00391 0.88531 1.06189 1.70278 1.03198 1.28019 1.19831 1.24929 0.97692 0.84596 1.03197 1.45244 1.10929 1.09450 1.47538 1.22080 0.85824 0.99823 0.99492 0.97340 0.90675 0.93426 0.99322 0.95403 0.92893 0.95363 0.91255 0.78689 0.90357 0.94671 0.82641 0.90512 0.92722 0.81591 0.77984 0.90791 0.89492 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.07 0.55 1.26 16 2 N -0.53 -11.37 4.70 -244.37 -1.15 -12.52 16 3 C 0.19 5.03 4.72 -4.97 -0.02 5.00 16 4 C -0.51 -14.33 8.46 -34.44 -0.29 -14.62 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 C 0.03 0.42 4.60 -3.82 -0.02 0.41 16 13 C 0.11 1.57 3.19 -26.73 -0.09 1.48 16 14 H 0.10 1.53 6.33 -51.93 -0.33 1.20 16 15 O -0.55 -8.04 12.62 -35.23 -0.44 -8.49 16 16 C 0.03 0.28 5.39 -3.82 -0.02 0.26 16 17 N -0.68 -6.81 6.49 -115.06 -0.75 -7.55 16 18 C 0.13 1.13 5.74 -4.98 -0.03 1.10 16 19 C -0.02 -0.18 6.46 -81.60 -0.53 -0.70 16 20 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 21 N -0.50 -6.04 11.25 -14.67 -0.17 -6.20 16 22 C 0.18 1.66 12.56 -90.37 -1.14 0.53 16 23 N -0.45 -3.91 3.15 -121.36 -0.38 -4.30 16 24 C 0.07 0.38 10.96 59.85 0.66 1.04 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 27 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 33 H 0.37 4.32 9.05 45.56 0.41 4.73 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.35 3.84 8.11 -39.29 -0.32 3.52 16 37 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.59 7.88 -51.93 -0.41 0.18 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -33.81 355.93 -9.35 -43.16 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.30 Total: 3.11 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.23 Total: -3.26 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.71 Total: -56.62 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.44 Total: -8.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.81 -9.35 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352067607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.525 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds