Wall clock time and date at job start Tue Mar 31 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47120 * 2 1 4 4 N 1.46491 * 109.47412 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00155 * 263.16322 * 4 3 2 6 6 H 1.08000 * 120.00310 * 188.56755 * 5 4 3 7 7 C 1.38959 * 119.99729 * 8.56038 * 5 4 3 8 8 N 1.31403 * 120.00054 * 25.72077 * 7 5 4 9 9 Si 1.86798 * 119.99855 * 205.72163 * 7 5 4 10 10 H 1.48498 * 109.47600 * 84.99003 * 9 7 5 11 11 H 1.48500 * 109.46918 * 204.98906 * 9 7 5 12 12 H 1.48509 * 109.47260 * 324.98640 * 9 7 5 13 13 C 1.34775 * 120.00117 * 83.43566 * 4 3 2 14 14 O 1.21292 * 120.00395 * 179.72473 * 13 4 3 15 15 C 1.50699 * 120.00136 * 359.72750 * 13 4 3 16 16 N 1.46490 * 109.47467 * 179.97438 * 15 13 4 17 17 C 1.34437 * 126.82549 * 124.99813 * 16 15 13 18 18 N 1.30830 * 108.07819 * 180.02562 * 17 16 15 19 19 C 1.33246 * 109.83023 * 359.97438 * 18 17 16 20 20 N 1.48017 * 125.52891 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99562 * 359.97438 * 20 19 18 22 22 O 1.21794 * 120.00523 * 179.97438 * 20 19 18 23 23 N 1.30716 * 108.94676 * 359.72389 * 19 18 17 24 24 H 1.08996 * 109.46837 * 299.99106 * 1 2 3 25 25 H 1.08991 * 109.47601 * 59.99776 * 1 2 3 26 26 H 1.09009 * 109.46629 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47243 * 240.00308 * 2 1 3 28 28 H 1.08999 * 109.47917 * 120.00105 * 2 1 3 29 29 H 1.09001 * 109.46811 * 60.00044 * 3 2 1 30 30 H 1.08999 * 109.46811 * 300.00782 * 3 2 1 31 31 H 0.97001 * 120.00351 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46902 * 299.99931 * 15 13 4 33 33 H 1.08996 * 109.47166 * 59.99460 * 15 13 4 34 34 H 1.07997 * 125.95943 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.5838 1.1780 6 1 5.2619 1.7229 1.1661 7 6 3.5082 1.5482 2.3877 8 7 2.3660 0.9050 2.4789 9 14 4.2142 2.4147 3.8844 10 1 3.8140 3.8446 3.8634 11 1 3.6943 1.7733 5.1188 12 1 5.6958 2.3150 3.8611 13 6 4.1783 1.3094 -1.1604 14 8 5.3912 1.3145 -1.1616 15 6 3.4243 1.1542 -2.4560 16 7 4.3758 1.0290 -3.5628 17 6 4.4339 0.0358 -4.4670 18 7 5.4207 0.2908 -5.2873 19 6 6.0129 1.4331 -4.9407 20 7 7.1676 2.0479 -5.6332 21 8 7.6545 1.5023 -6.6073 22 8 7.6309 3.0992 -5.2291 23 7 5.4047 1.9259 -3.8939 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9564 -0.8899 31 1 1.8896 0.8798 3.3235 32 1 2.8015 0.2610 -2.4091 33 1 2.7939 2.0287 -2.6165 34 1 3.7801 -0.8227 -4.5089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:20 Heat of formation + Delta-G solvation = 84.891432 kcal Electronic energy + Delta-G solvation = -22282.548287 eV Core-core repulsion = 18643.762897 eV Total energy + Delta-G solvation = -3638.785390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.111 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.86487 -41.82513 -38.99731 -36.64164 -35.75905 -34.23378 -32.63974 -31.98142 -31.64861 -29.10748 -26.90526 -25.91474 -24.53047 -22.72106 -22.08268 -21.09738 -19.63032 -19.09851 -18.67324 -17.87148 -17.25574 -16.89973 -16.43907 -15.62864 -15.24493 -14.76461 -14.60658 -14.11488 -13.98093 -13.22158 -12.93396 -12.56384 -12.20478 -11.88445 -11.67654 -11.66294 -11.50009 -11.25070 -11.18728 -11.10374 -10.71583 -10.63782 -10.50865 -10.45750 -10.38071 -10.34642 -9.96647 -9.15784 -8.74437 -8.06769 -6.64273 -4.05398 0.05198 0.59452 1.34203 2.05928 2.44363 2.97516 3.13293 3.17264 3.42384 3.75524 3.94879 4.23924 4.46618 4.75075 4.93996 4.99390 5.12357 5.14257 5.60324 5.62177 5.71068 5.90309 6.03442 6.15792 6.25640 6.31590 6.47532 6.59232 6.96743 7.11349 7.20306 7.44030 7.75437 7.77700 8.18658 8.87373 9.08477 9.58750 10.35664 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.004578 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.421826 B = 6115.341658 C = 7181.016982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.425 5.425 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.037 3.963 8 N -0.858 5.858 9 Si 0.922 3.078 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.417 3.583 14 O -0.569 6.569 15 C 0.107 3.893 16 N -0.318 5.318 17 C 0.276 3.724 18 N -0.501 5.501 19 C 0.253 3.747 20 N 0.068 4.932 21 O -0.109 6.109 22 O -0.115 6.115 23 N -0.177 5.177 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.028 0.972 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.033 0.967 31 H 0.271 0.729 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -2.140 -7.587 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.143 5.143 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.167 4.167 8 N -0.496 5.496 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.203 3.797 14 O -0.453 6.453 15 C -0.018 4.018 16 N -0.112 5.112 17 C -0.020 4.020 18 N -0.232 5.232 19 C -0.106 4.106 20 N 0.599 4.401 21 O -0.330 6.330 22 O -0.334 6.334 23 N -0.017 5.017 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.624 -1.991 -6.975 9.824 hybrid contribution 0.021 0.194 0.811 0.834 sum -6.604 -1.796 -6.164 9.211 Atomic orbital electron populations 1.21615 0.96769 1.00449 1.00890 1.21923 0.94447 0.97801 1.02305 1.21696 0.80386 0.97231 1.01511 1.43761 1.05370 1.59903 1.05221 1.19751 0.94578 1.47814 0.81656 0.87518 1.25220 0.96376 0.96112 0.99037 1.70064 1.16684 1.35758 1.27102 0.86003 0.79773 0.79681 0.79738 1.20085 1.20910 1.19317 1.19430 0.88266 0.87701 0.84341 1.90646 1.13038 1.55995 1.85576 1.22206 0.88668 1.06236 0.84661 1.50345 1.22612 1.15359 1.22879 1.26239 0.95717 0.94768 0.85260 1.69928 1.09444 1.14310 1.29502 1.23905 0.96146 0.94881 0.95715 1.41663 0.98723 1.00068 0.99674 1.94593 1.59480 1.64471 1.14457 1.94650 1.61263 1.08501 1.68966 1.78404 0.99360 1.13648 1.10314 0.92434 0.94279 0.93743 0.95325 0.87765 0.87295 0.94832 0.91848 0.85116 0.86778 0.74122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.13 -2.06 5.67 -26.73 -0.15 -2.21 16 3 C 0.12 2.08 4.35 -4.04 -0.02 2.07 16 4 N -0.42 -9.34 2.64 -114.81 -0.30 -9.65 16 5 C -0.31 -7.79 9.42 -14.93 -0.14 -7.94 16 6 H 0.11 2.94 7.31 -52.49 -0.38 2.56 16 7 C 0.04 0.87 4.88 -17.47 -0.09 0.78 16 8 N -0.86 -19.25 8.71 55.50 0.48 -18.76 16 9 Si 0.92 18.97 29.62 -169.99 -5.04 13.93 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.42 8.87 7.61 -10.99 -0.08 8.79 16 14 O -0.57 -14.87 15.35 5.55 0.09 -14.79 16 15 C 0.11 1.55 5.64 -5.20 -0.03 1.52 16 16 N -0.32 -4.98 3.40 -63.82 -0.22 -5.20 16 17 C 0.28 3.46 12.63 -90.65 -1.14 2.31 16 18 N -0.50 -8.04 11.15 -12.81 -0.14 -8.18 16 19 C 0.25 4.66 9.01 -308.63 -2.78 1.88 16 20 N 0.07 1.25 4.45 31.81 0.14 1.39 16 21 O -0.11 -1.90 19.23 -29.46 -0.57 -2.46 16 22 O -0.12 -2.14 19.22 -29.46 -0.57 -2.71 16 23 N -0.18 -3.43 11.79 31.75 0.37 -3.05 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.03 0.41 6.42 -51.93 -0.33 0.07 16 28 H 0.10 2.09 6.39 -51.93 -0.33 1.76 16 29 H 0.11 2.22 5.83 -51.93 -0.30 1.91 16 30 H 0.03 0.50 6.72 -51.93 -0.35 0.15 16 31 H 0.27 5.83 8.31 -40.82 -0.34 5.49 16 32 H 0.13 1.38 6.33 -51.93 -0.33 1.05 16 33 H 0.11 1.40 7.41 -51.93 -0.38 1.02 16 34 H 0.24 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -31.08 303.23 -8.48 -39.56 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.24 Total: -0.38 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -4.06 Total: 5.73 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.34 Total: -43.45 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.05 Total: -19.96 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.04 Total: 13.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.08 -8.48 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.449 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds