Wall clock time and date at job start Tue Mar 31 2020 03:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99951 * 2 1 4 4 N 1.34772 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00221 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47380 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00080 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99827 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99854 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46963 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00462 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00575 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00342 * 225.28084 * 13 12 10 15 15 C 1.38956 * 119.99571 * 45.28112 * 13 12 10 16 16 N 1.31412 * 119.99777 * 197.86041 * 15 13 12 17 17 Si 1.86797 * 120.00327 * 17.85886 * 15 13 12 18 18 H 1.48497 * 109.47168 * 266.07844 * 17 15 13 19 19 H 1.48502 * 109.46600 * 26.07404 * 17 15 13 20 20 H 1.48493 * 109.47183 * 146.07411 * 17 15 13 21 21 C 1.46503 * 119.99573 * 0.02562 * 12 10 9 22 22 C 1.53002 * 117.49564 * 183.22229 * 21 12 10 23 23 C 1.52998 * 59.99946 * 252.50835 * 22 21 12 24 24 H 1.09002 * 109.47278 * 270.00113 * 1 2 3 25 25 H 1.09003 * 109.47239 * 30.00183 * 1 2 3 26 26 H 1.08996 * 109.47585 * 150.00151 * 1 2 3 27 27 H 0.97002 * 120.00281 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.46980 * 59.99396 * 5 4 2 29 29 H 1.09001 * 109.46533 * 300.00374 * 5 4 2 30 30 H 0.97003 * 120.00449 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.46948 * 60.00097 * 9 8 6 32 32 H 1.08997 * 109.47058 * 299.99569 * 9 8 6 33 33 H 0.97005 * 120.00026 * 179.97438 * 16 15 13 34 34 H 1.08998 * 115.55338 * 328.92604 * 21 12 10 35 35 H 1.09001 * 117.50205 * 359.97438 * 22 21 12 36 36 H 1.09008 * 117.49934 * 145.01928 * 22 21 12 37 37 H 1.09003 * 117.49684 * 252.51460 * 23 22 21 38 38 H 1.08994 * 117.51843 * 107.48430 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1481 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0009 8 7 5.4732 -2.8344 0.0019 9 6 5.9614 -4.2156 0.0024 10 6 7.4684 -4.2156 0.0029 11 8 8.0750 -3.1652 0.0033 12 7 8.1424 -5.3828 0.0038 13 6 9.5133 -5.3829 0.0037 14 1 10.0532 -6.0416 -0.6603 15 6 10.2081 -4.5354 0.8580 16 7 11.4747 -4.2684 0.6316 17 14 9.3418 -3.7757 2.3283 18 1 8.8222 -2.4348 1.9582 19 1 8.2127 -4.6471 2.7421 20 1 10.3016 -3.6415 3.4534 21 6 7.4098 -6.6515 0.0039 22 6 8.2300 -7.9408 0.0813 23 6 7.5467 -7.5464 -1.2295 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6958 -2.0073 0.0005 28 1 4.0088 -0.6532 0.8910 29 1 4.0095 -0.6536 -0.8889 30 1 6.1036 -2.0971 0.0024 31 1 5.5988 -4.7295 -0.8878 32 1 5.5975 -4.7293 0.8922 33 1 11.9597 -3.6764 1.2278 34 1 6.4449 -6.6373 0.5108 35 1 9.3146 -7.8451 0.1318 36 1 7.8048 -8.7751 0.6394 37 1 6.6719 -8.1211 -1.5339 38 1 8.1814 -7.1910 -2.0412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:54 Heat of formation + Delta-G solvation = -64.330706 kcal Electronic energy + Delta-G solvation = -22189.134057 eV Core-core repulsion = 18647.418253 eV Total energy + Delta-G solvation = -3541.715804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32096 -39.50950 -38.82259 -36.65940 -34.74093 -34.30569 -33.02976 -31.65026 -30.79933 -28.76987 -26.55670 -24.31410 -21.97297 -21.55061 -20.81878 -20.64032 -19.64195 -18.22247 -16.96858 -16.71875 -16.32088 -16.22006 -15.85345 -15.42338 -15.36195 -14.91013 -14.47902 -14.03437 -13.85087 -13.33658 -13.28313 -13.16847 -12.91771 -12.82514 -12.64985 -12.31181 -12.06687 -11.49473 -11.25045 -11.03739 -10.47076 -10.24965 -10.20096 -10.10159 -10.04706 -9.92255 -9.41444 -9.08656 -8.75154 -8.67775 -7.64698 -6.33198 -4.13774 2.38448 2.49156 2.67577 3.12809 3.34878 3.35634 3.49919 3.57963 4.18804 4.37736 4.45823 4.53769 4.68161 4.95059 4.96590 5.06937 5.18003 5.22223 5.24705 5.34343 5.49306 5.53585 5.55735 5.64950 5.75257 6.06386 6.07481 6.16835 6.34719 6.54297 6.78063 7.26705 7.46674 7.69918 7.80369 7.97347 8.08743 8.58718 8.69791 9.26451 9.58188 10.72473 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.004080 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.868362 B = 6861.613091 C = 7751.350467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.718 5.718 5 C 0.098 3.902 6 C 0.510 3.490 7 O -0.549 6.549 8 N -0.704 5.704 9 C 0.104 3.896 10 C 0.445 3.555 11 O -0.542 6.542 12 N -0.427 5.427 13 C -0.347 4.347 14 H 0.097 0.903 15 C 0.094 3.906 16 N -0.861 5.861 17 Si 0.906 3.094 18 H -0.256 1.256 19 H -0.279 1.279 20 H -0.303 1.303 21 C 0.055 3.945 22 C -0.168 4.168 23 C -0.196 4.196 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.413 0.587 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.415 0.585 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.274 0.726 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 0.209 -0.476 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.427 6.427 4 N -0.374 5.374 5 C -0.029 4.029 6 C 0.295 3.705 7 O -0.427 6.427 8 N -0.358 5.358 9 C -0.023 4.023 10 C 0.234 3.766 11 O -0.425 6.425 12 N -0.148 5.148 13 C -0.473 4.473 14 H 0.115 0.885 15 C -0.116 4.116 16 N -0.495 5.495 17 Si 0.735 3.265 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.231 1.231 21 C -0.051 4.051 22 C -0.205 4.205 23 C -0.234 4.234 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.250 0.750 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.254 0.746 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.432 0.907 -0.439 17.461 hybrid contribution -0.138 0.090 0.771 0.788 sum -17.570 0.998 0.332 17.601 Atomic orbital electron populations 1.21856 0.91181 1.05012 1.04922 1.20837 0.90769 0.83057 0.75502 1.90741 1.70807 1.31421 1.49747 1.45829 1.06043 1.09963 1.75549 1.21050 0.82223 0.94376 1.05275 1.20404 0.82621 0.91010 0.76471 1.90669 1.55261 1.45889 1.50905 1.45690 1.06832 1.09795 1.73456 1.21171 0.94168 0.83355 1.03610 1.20136 0.88145 0.85382 0.82953 1.90560 1.68734 1.30403 1.52794 1.43046 1.06120 1.01500 1.64103 1.18690 0.77690 1.27404 1.23516 0.88549 1.25299 0.94712 0.94407 0.97139 1.69727 1.09979 1.33327 1.36498 0.86439 0.78863 0.81435 0.79716 1.18106 1.20461 1.23122 1.21891 0.97064 0.84391 1.01734 1.23156 1.01469 0.96391 0.99532 1.23294 1.03022 1.04188 0.92926 0.88723 0.88749 0.89977 0.74952 0.88136 0.88033 0.74613 0.88905 0.89640 0.91591 0.87213 0.86856 0.89265 0.89254 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.30 36.01 0.37 -0.71 16 2 C 0.51 5.57 7.94 -10.99 -0.09 5.49 16 3 O -0.55 -8.33 17.10 5.56 0.10 -8.23 16 4 N -0.72 -7.56 5.53 -61.47 -0.34 -7.89 16 5 C 0.10 1.14 6.15 -5.19 -0.03 1.10 16 6 C 0.51 7.08 7.90 -10.99 -0.09 6.99 16 7 O -0.55 -8.62 15.67 5.56 0.09 -8.53 16 8 N -0.70 -10.90 5.53 -61.48 -0.34 -11.24 16 9 C 0.10 1.79 4.77 -5.19 -0.02 1.76 16 10 C 0.44 9.79 5.95 -10.99 -0.07 9.72 16 11 O -0.54 -13.71 11.49 5.55 0.06 -13.64 16 12 N -0.43 -9.65 2.45 -107.73 -0.26 -9.92 16 13 C -0.35 -9.24 8.35 -14.93 -0.12 -9.36 16 14 H 0.10 2.69 7.47 -52.49 -0.39 2.30 16 15 C 0.09 2.65 4.88 -17.47 -0.09 2.57 16 16 N -0.86 -25.35 13.96 55.50 0.77 -24.57 16 17 Si 0.91 23.01 24.91 -169.99 -4.23 18.78 16 18 H -0.26 -6.67 6.38 56.52 0.36 -6.31 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 21 C 0.05 0.97 5.87 -67.93 -0.40 0.57 16 22 C -0.17 -2.74 9.80 -26.73 -0.26 -3.00 16 23 C -0.20 -3.02 10.36 -26.73 -0.28 -3.30 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.41 3.91 7.44 -40.82 -0.30 3.61 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.42 6.50 7.44 -40.82 -0.30 6.20 16 31 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.09 1.39 7.56 -51.93 -0.39 1.00 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.11 1.67 6.96 -51.93 -0.36 1.31 16 35 H 0.11 2.13 6.74 -51.93 -0.35 1.78 16 36 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -34.34 324.66 -5.42 -39.76 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.08 Total: 8.77 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -1.07 Total: 11.83 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.17 Total: -53.63 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: 0.25 Total: -30.41 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.23 Total: 18.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.34 -5.42 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.568 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds