Wall clock time and date at job start Tue Mar 31 2020 03:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 119.99951 * 2 1 4 4 N 1.34772 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00221 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47380 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00080 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99827 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99854 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46963 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00462 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00575 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00342 * 225.28084 * 13 12 10 15 15 C 1.38956 * 119.99571 * 45.28112 * 13 12 10 16 16 N 1.31412 * 119.99777 * 197.86041 * 15 13 12 17 17 Si 1.86797 * 120.00327 * 17.85886 * 15 13 12 18 18 H 1.48497 * 109.47168 * 266.07844 * 17 15 13 19 19 H 1.48502 * 109.46600 * 26.07404 * 17 15 13 20 20 H 1.48493 * 109.47183 * 146.07411 * 17 15 13 21 21 C 1.46503 * 119.99573 * 0.02562 * 12 10 9 22 22 C 1.53002 * 117.49564 * 183.22229 * 21 12 10 23 23 C 1.52998 * 59.99946 * 252.50835 * 22 21 12 24 24 H 1.09002 * 109.47278 * 270.00113 * 1 2 3 25 25 H 1.09003 * 109.47239 * 30.00183 * 1 2 3 26 26 H 1.08996 * 109.47585 * 150.00151 * 1 2 3 27 27 H 0.97002 * 120.00281 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.46980 * 59.99396 * 5 4 2 29 29 H 1.09001 * 109.46533 * 300.00374 * 5 4 2 30 30 H 0.97003 * 120.00449 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.46948 * 60.00097 * 9 8 6 32 32 H 1.08997 * 109.47058 * 299.99569 * 9 8 6 33 33 H 0.97005 * 120.00026 * 179.97438 * 16 15 13 34 34 H 1.08998 * 115.55338 * 328.92604 * 21 12 10 35 35 H 1.09001 * 117.50205 * 359.97438 * 22 21 12 36 36 H 1.09008 * 117.49934 * 145.01928 * 22 21 12 37 37 H 1.09003 * 117.49684 * 252.51460 * 23 22 21 38 38 H 1.08994 * 117.51843 * 107.48430 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1481 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0009 8 7 5.4732 -2.8344 0.0019 9 6 5.9614 -4.2156 0.0024 10 6 7.4684 -4.2156 0.0029 11 8 8.0750 -3.1652 0.0033 12 7 8.1424 -5.3828 0.0038 13 6 9.5133 -5.3829 0.0037 14 1 10.0532 -6.0416 -0.6603 15 6 10.2081 -4.5354 0.8580 16 7 11.4747 -4.2684 0.6316 17 14 9.3418 -3.7757 2.3283 18 1 8.8222 -2.4348 1.9582 19 1 8.2127 -4.6471 2.7421 20 1 10.3016 -3.6415 3.4534 21 6 7.4098 -6.6515 0.0039 22 6 8.2300 -7.9408 0.0813 23 6 7.5467 -7.5464 -1.2295 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6958 -2.0073 0.0005 28 1 4.0088 -0.6532 0.8910 29 1 4.0095 -0.6536 -0.8889 30 1 6.1036 -2.0971 0.0024 31 1 5.5988 -4.7295 -0.8878 32 1 5.5975 -4.7293 0.8922 33 1 11.9597 -3.6764 1.2278 34 1 6.4449 -6.6373 0.5108 35 1 9.3146 -7.8451 0.1318 36 1 7.8048 -8.7751 0.6394 37 1 6.6719 -8.1211 -1.5339 38 1 8.1814 -7.1910 -2.0412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:54 Heat of formation + Delta-G solvation = -92.414874 kcal Electronic energy + Delta-G solvation = -22190.351878 eV Core-core repulsion = 18647.418253 eV Total energy + Delta-G solvation = -3542.933625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51649 -40.85830 -40.02809 -38.17578 -35.87668 -35.45583 -34.87238 -33.50284 -31.59210 -29.98755 -27.79050 -25.99746 -23.35304 -22.95768 -21.87030 -21.65864 -21.32363 -19.50999 -18.40582 -17.92363 -17.70091 -17.42056 -17.13200 -16.81518 -16.59455 -16.25525 -15.77155 -15.38343 -15.26800 -14.87465 -14.68285 -14.49885 -14.22850 -14.10612 -13.53286 -13.32401 -13.30176 -12.93166 -12.92222 -12.53547 -12.19418 -12.13806 -11.71125 -11.32516 -11.26692 -11.09989 -10.81424 -10.49880 -10.38879 -10.22458 -9.43042 -8.46039 -6.24778 1.19057 1.31887 1.35807 1.44138 1.59232 1.63431 1.78105 2.35051 2.36378 2.64435 2.93925 3.17000 3.48345 3.65664 3.93810 4.05623 4.13140 4.21092 4.26558 4.32802 4.34725 4.40210 4.55376 4.68801 4.89377 4.93003 5.06017 5.11182 5.23998 5.24707 5.46206 5.65858 5.81321 6.29171 6.47821 6.64005 6.81293 6.92532 7.16575 7.26215 7.72642 8.63464 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.004080 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.868362 B = 6861.613091 C = 7751.350467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.713 5.713 5 C 0.101 3.899 6 C 0.519 3.481 7 O -0.562 6.562 8 N -0.710 5.710 9 C 0.118 3.882 10 C 0.442 3.558 11 O -0.581 6.581 12 N -0.444 5.444 13 C -0.336 4.336 14 H 0.068 0.932 15 C 0.045 3.955 16 N -0.910 5.910 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.261 1.261 20 H -0.303 1.303 21 C 0.033 3.967 22 C -0.169 4.169 23 C -0.175 4.175 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.420 0.580 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.414 0.586 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.274 0.726 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.547 -0.905 -0.087 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.368 5.368 5 C -0.027 4.027 6 C 0.306 3.694 7 O -0.441 6.441 8 N -0.364 5.364 9 C -0.010 4.010 10 C 0.233 3.767 11 O -0.466 6.466 12 N -0.165 5.165 13 C -0.463 4.463 14 H 0.086 0.914 15 C -0.160 4.160 16 N -0.547 5.547 17 Si 0.784 3.216 18 H -0.195 1.195 19 H -0.185 1.185 20 H -0.232 1.232 21 C -0.071 4.071 22 C -0.206 4.206 23 C -0.214 4.214 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.259 0.741 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.252 0.748 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.177 -0.269 -0.053 21.179 hybrid contribution 0.960 0.367 0.527 1.155 sum -20.216 0.099 0.473 20.222 Atomic orbital electron populations 1.21896 0.87407 1.06398 1.06437 1.21672 0.92506 0.82133 0.74018 1.90723 1.72114 1.33022 1.52088 1.45863 1.05523 1.10397 1.75060 1.21007 0.83107 0.92765 1.05786 1.20604 0.81721 0.91639 0.75421 1.90663 1.55383 1.46575 1.51495 1.45739 1.07466 1.09125 1.74087 1.21045 0.89914 0.84700 1.05307 1.20985 0.90372 0.84483 0.80895 1.90537 1.70210 1.31867 1.53968 1.43210 1.04973 1.03806 1.64469 1.18527 0.79945 1.25839 1.22034 0.91396 1.25957 0.95182 0.95382 0.99470 1.69822 1.11468 1.35409 1.37983 0.85636 0.78390 0.80251 0.77373 1.19545 1.18514 1.23187 1.22289 0.98124 0.82418 1.04246 1.23189 0.99599 0.96933 1.00890 1.23323 1.03692 1.02898 0.91439 0.86983 0.88407 0.87550 0.74104 0.87719 0.87510 0.74766 0.86966 0.87849 0.91709 0.83557 0.90394 0.85490 0.85009 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.30 71.24 0.73 -0.85 16 2 C 0.51 10.11 7.94 87.66 0.70 10.81 16 3 O -0.60 -17.67 17.10 -3.01 -0.05 -17.72 16 4 N -0.71 -13.39 5.53 -466.80 -2.58 -15.97 16 5 C 0.10 2.15 6.15 85.63 0.53 2.68 16 6 C 0.52 13.12 7.90 87.66 0.69 13.81 16 7 O -0.56 -15.82 15.67 -3.02 -0.05 -15.87 16 8 N -0.71 -20.46 5.53 -466.80 -2.58 -23.04 16 9 C 0.12 3.67 4.77 85.63 0.41 4.08 16 10 C 0.44 18.90 5.95 87.66 0.52 19.42 16 11 O -0.58 -29.37 11.49 -3.07 -0.04 -29.41 16 12 N -0.44 -19.66 2.45 -613.12 -1.50 -21.16 16 13 C -0.34 -18.31 8.35 84.04 0.70 -17.61 16 14 H 0.07 3.99 7.47 -2.91 -0.02 3.97 16 15 C 0.04 2.57 4.88 84.93 0.41 2.99 16 16 N -0.91 -55.77 13.96 21.67 0.30 -55.47 16 17 Si 0.96 48.01 24.91 68.60 1.71 49.72 16 18 H -0.27 -14.02 6.38 99.48 0.63 -13.38 16 19 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 21 C 0.03 1.08 5.87 44.99 0.26 1.34 16 22 C -0.17 -5.13 9.80 30.59 0.30 -4.83 16 23 C -0.18 -4.91 10.36 30.59 0.32 -4.59 16 24 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.42 6.75 7.44 -92.71 -0.69 6.06 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.41 12.49 7.44 -92.71 -0.69 11.80 16 31 H 0.11 3.11 8.11 -2.39 -0.02 3.10 16 32 H 0.10 2.92 7.56 -2.39 -0.02 2.90 16 33 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 34 H 0.15 3.72 6.96 -2.39 -0.02 3.70 16 35 H 0.08 2.96 6.74 -2.39 -0.02 2.94 16 36 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 37 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -77.30 324.66 0.44 -76.85 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.35 Total: 24.82 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.58 Total: 27.23 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -6.36 Total: -115.64 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -0.13 Total: -62.99 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.71 Total: 49.72 kcal Total: -77.30 0.44 -76.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds