Wall clock time and date at job start Tue Mar 31 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 103.00221 * 2 1 4 4 H 1.09002 * 109.46692 * 55.00220 * 3 2 1 5 5 C 1.52997 * 109.47264 * 295.00358 * 3 2 1 6 6 C 1.50697 * 109.47038 * 174.99902 * 3 2 1 7 7 O 1.21290 * 120.00302 * 25.00819 * 6 3 2 8 8 N 1.34780 * 119.99926 * 205.00342 * 6 3 2 9 9 C 1.40160 * 120.00067 * 180.02562 * 8 6 3 10 10 C 1.40406 * 125.97165 * 359.71535 * 9 8 6 11 11 C 1.35240 * 107.86510 * 179.82611 * 10 9 8 12 12 N 1.34969 * 107.85955 * 0.43297 * 11 10 9 13 13 C 1.46503 * 125.97291 * 179.69180 * 12 11 10 14 14 C 1.52998 * 109.47124 * 125.01400 * 13 12 11 15 15 C 1.50704 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99724 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99562 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47521 * 90.00232 * 19 17 15 21 21 H 1.48511 * 109.46964 * 209.99813 * 19 17 15 22 22 H 1.48501 * 109.47622 * 329.99280 * 19 17 15 23 23 N 1.31220 * 125.97281 * 180.02562 * 9 8 6 24 24 H 1.08997 * 109.47516 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47216 * 299.99726 * 1 2 3 26 26 H 1.09000 * 109.47117 * 59.99285 * 1 2 3 27 27 H 1.09002 * 109.47153 * 299.99579 * 5 3 2 28 28 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47261 * 59.99751 * 5 3 2 30 30 H 0.96998 * 119.99716 * 359.97438 * 8 6 3 31 31 H 1.08005 * 126.06940 * 359.97438 * 10 9 8 32 32 H 1.08000 * 126.06721 * 180.13002 * 11 10 9 33 33 H 1.08999 * 109.47018 * 245.01267 * 13 12 11 34 34 H 1.09000 * 109.47160 * 5.01211 * 13 12 11 35 35 H 1.08999 * 109.47065 * 299.99838 * 14 13 12 36 36 H 1.09000 * 109.47256 * 59.99870 * 14 13 12 37 37 H 0.97007 * 119.99315 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4017 -1.3073 6 6 3.7142 1.9385 0.1239 7 8 4.4585 1.0531 -0.2410 8 7 4.2217 3.0755 0.6400 9 6 5.6095 3.2347 0.7547 10 6 6.5815 2.2939 0.3786 11 6 7.7969 2.8242 0.6443 12 7 7.6063 4.0494 1.1774 13 6 8.6581 4.9697 1.6170 14 6 8.4840 6.3168 0.9129 15 6 9.5655 7.2637 1.3656 16 1 10.3030 6.9374 2.0839 17 6 9.6129 8.5469 0.8634 18 7 8.7145 8.9444 -0.0109 19 14 10.9539 9.7202 1.4240 20 1 12.1306 9.5919 0.5273 21 1 10.4441 11.1142 1.3752 22 1 11.3529 9.3877 2.8152 23 7 6.2273 4.2869 1.2376 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.2354 1.9151 -2.1491 28 1 1.9877 3.4638 -1.3070 29 1 0.6635 2.2780 -1.3968 30 1 3.6265 3.7838 0.9313 31 1 6.3922 1.3205 -0.0494 32 1 8.7504 2.3494 0.4664 33 1 8.5891 5.1118 2.6955 34 1 9.6336 4.5525 1.3672 35 1 8.5530 6.1747 -0.1655 36 1 7.5085 6.7340 1.1628 37 1 8.7476 9.8473 -0.3639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:40 Heat of formation + Delta-G solvation = 42.389300 kcal Electronic energy + Delta-G solvation = -19185.821792 eV Core-core repulsion = 16091.486585 eV Total energy + Delta-G solvation = -3094.335206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02709 -39.58125 -35.11820 -34.05503 -33.41239 -31.83890 -29.72415 -29.18844 -28.50606 -25.53893 -24.47307 -22.05957 -21.57664 -20.20420 -19.79230 -17.53265 -17.13429 -16.67678 -16.15436 -15.60662 -15.20716 -14.77571 -14.61345 -14.52835 -14.16915 -13.87432 -13.55835 -13.18880 -12.88756 -12.70458 -12.62411 -12.30254 -12.21370 -12.09803 -11.54138 -11.09074 -10.90879 -10.60229 -10.42143 -10.18749 -10.01320 -9.84371 -9.71477 -9.32465 -8.47736 -8.45011 -7.97090 -7.79309 -6.10858 -4.16247 1.08307 2.02161 2.20323 2.48168 2.62136 3.26023 3.32078 3.34651 3.41826 3.45058 4.28924 4.37768 4.43474 4.59987 4.75997 4.79399 5.09579 5.18648 5.24457 5.25349 5.37357 5.38196 5.69709 5.91905 6.00550 6.12538 6.18455 6.35323 6.51578 7.08168 7.25262 7.44216 7.57457 7.66225 7.90403 7.97274 8.19801 8.27008 8.90014 9.48450 11.00258 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.040523 B = 0.002791 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.800844 B =10030.743251 C =10497.101158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.184 6.184 3 C -0.089 4.089 4 H 0.110 0.890 5 C -0.145 4.145 6 C 0.541 3.459 7 O -0.495 6.495 8 N -0.626 5.626 9 C 0.271 3.729 10 C -0.279 4.279 11 C 0.057 3.943 12 N -0.340 5.340 13 C 0.133 3.867 14 C 0.016 3.984 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 N -0.304 5.304 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.021 0.979 36 H 0.033 0.967 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 -15.316 -0.107 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.042 5.958 3 C -0.221 4.221 4 H 0.129 0.871 5 C -0.204 4.204 6 C 0.325 3.675 7 O -0.366 6.366 8 N -0.275 5.275 9 C 0.017 3.983 10 C -0.310 4.310 11 C -0.092 4.092 12 N -0.122 5.122 13 C 0.013 3.987 14 C -0.022 4.022 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 N -0.135 5.135 24 H 0.123 0.877 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.249 0.751 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.417 -15.465 0.070 21.143 hybrid contribution -0.374 1.499 0.076 1.547 sum -14.791 -13.966 0.146 20.343 Atomic orbital electron populations 1.23564 0.95510 1.06746 1.05040 1.87465 1.05023 1.05477 1.97868 1.23256 0.96115 0.98881 1.03894 0.87145 1.22030 1.02001 1.01527 0.94804 1.19602 0.88987 0.81529 0.77427 1.90690 1.59460 1.40336 1.46154 1.42362 1.03837 1.19131 1.62144 1.19054 0.84002 0.94249 1.00996 1.21621 0.89569 1.03724 1.16075 1.22615 1.00107 0.87283 0.99168 1.48817 1.03834 1.13118 1.46462 1.22314 0.84962 0.91337 1.00046 1.19359 0.98693 0.88324 0.95820 1.21032 1.12713 0.97020 1.26012 0.92274 1.25006 0.96073 0.98221 0.94885 1.69986 1.34559 1.18500 1.29654 0.86511 0.81729 0.80146 0.79123 1.20539 1.21115 1.19744 1.77363 0.88525 1.20467 1.27102 0.87721 0.90441 0.90248 0.90250 0.90755 0.91041 0.75085 0.81809 0.80991 0.90679 0.89433 0.96088 0.94840 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 10.45 101.05 1.06 0.26 16 2 S -0.18 -1.85 21.10 -107.50 -2.27 -4.11 16 3 C -0.09 -0.82 3.17 -27.89 -0.09 -0.91 16 4 H 0.11 0.74 8.14 -51.92 -0.42 0.31 16 5 C -0.14 -1.08 9.08 37.16 0.34 -0.74 16 6 C 0.54 7.16 6.92 -10.99 -0.08 7.09 16 7 O -0.49 -8.19 13.27 5.55 0.07 -8.12 16 8 N -0.63 -8.68 5.45 -11.13 -0.06 -8.74 16 9 C 0.27 4.89 8.11 -154.39 -1.25 3.64 16 10 C -0.28 -4.94 9.61 -39.83 -0.38 -5.32 16 11 C 0.06 0.96 11.44 -17.24 -0.20 0.77 16 12 N -0.34 -6.71 3.68 -61.38 -0.23 -6.94 16 13 C 0.13 2.69 6.44 -4.04 -0.03 2.66 16 14 C 0.02 0.40 5.16 -27.88 -0.14 0.26 16 15 C -0.53 -14.46 9.11 -34.44 -0.31 -14.78 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 N -0.30 -6.24 12.43 31.44 0.39 -5.85 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.08 0.37 7.14 -51.92 -0.37 0.00 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.39 6.92 -51.93 -0.36 0.03 16 30 H 0.41 4.52 8.82 -40.82 -0.36 4.16 16 31 H 0.16 2.87 5.92 -52.48 -0.31 2.56 16 32 H 0.17 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 331.14 15.07 4.99 4.99 Total: -1.00 -34.08 331.14 -7.73 -41.81 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.17 Total: 2.06 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.18 Total: -5.45 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.84 Total: -47.29 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.07 Total: -8.12 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.27 Total: -4.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.08 -7.73 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.203 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds