Wall clock time and date at job start Tue Mar 31 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99988 * 2 1 4 4 O 1.21282 * 119.99919 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00113 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.47184 * 179.97438 * 5 3 2 7 7 N 1.29024 * 124.91766 * 89.99731 * 6 5 3 8 8 C 1.31785 * 117.12771 * 179.97438 * 7 6 5 9 9 C 1.50700 * 122.74962 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47068 * 275.02549 * 9 8 7 11 11 C 1.46897 * 111.00161 * 66.05192 * 10 9 8 12 12 C 1.46906 * 110.99890 * 190.00323 * 10 9 8 13 13 C 1.50699 * 109.47140 * 170.00136 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00241 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00125 * 17 15 13 19 19 H 1.48503 * 109.47215 * 210.00315 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00276 * 17 15 13 21 21 C 1.33637 * 114.49479 * 0.23793 * 8 7 6 22 22 S 1.70974 * 124.91497 * 270.00126 * 6 5 3 23 23 H 1.08999 * 109.46974 * 300.00032 * 1 2 3 24 24 H 1.08995 * 109.46784 * 60.00640 * 1 2 3 25 25 H 1.09002 * 109.46701 * 179.97438 * 1 2 3 26 26 H 0.97005 * 119.99831 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47185 * 59.99358 * 5 3 2 28 28 H 1.09009 * 109.46974 * 299.99711 * 5 3 2 29 29 H 1.09004 * 109.46926 * 155.02552 * 9 8 7 30 30 H 1.08994 * 109.46958 * 35.03081 * 9 8 7 31 31 H 1.08997 * 109.47293 * 183.95420 * 11 10 9 32 32 H 1.09000 * 109.46769 * 303.95193 * 11 10 9 33 33 H 1.08999 * 109.47106 * 63.94333 * 11 10 9 34 34 H 1.09004 * 109.47040 * 290.00074 * 12 10 9 35 35 H 1.09000 * 109.47033 * 50.00026 * 12 10 9 36 36 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 37 37 H 1.08002 * 126.03405 * 179.77053 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1482 2.5880 -0.0002 7 7 4.3939 3.2850 1.0574 8 6 4.8297 4.5157 0.8781 9 6 5.1553 5.4402 2.0229 10 7 3.9296 6.1140 2.4719 11 6 2.9846 5.1532 3.0566 12 6 4.2389 7.1920 3.4207 13 6 3.0000 8.0134 3.6691 14 1 2.0755 7.7602 3.1715 15 6 3.0471 9.0887 4.5307 16 7 1.9659 9.8052 4.7478 17 14 4.6464 9.5272 5.3907 18 1 5.4136 10.4829 4.5521 19 1 4.3470 10.1512 6.7046 20 1 5.4500 8.2958 5.5992 21 6 4.9540 4.8786 -0.4020 22 16 4.4749 3.5097 -1.4027 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9500 -0.8401 0.0004 27 1 4.0096 0.6531 -0.8891 28 1 4.0089 0.6536 0.8909 29 1 5.8796 6.1852 1.6936 30 1 5.5759 4.8639 2.8469 31 1 2.0588 5.6664 3.3164 32 1 2.7729 4.3658 2.3332 33 1 3.4211 4.7144 3.9538 34 1 4.5835 6.7610 4.3607 35 1 5.0198 7.8289 3.0051 36 1 1.9991 10.5620 5.3537 37 1 5.2902 5.8405 -0.7600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083219113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:30 Heat of formation + Delta-G solvation = -8.534255 kcal Electronic energy + Delta-G solvation = -19676.122241 eV Core-core repulsion = 16579.578824 eV Total energy + Delta-G solvation = -3096.543417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23329 -40.39577 -38.06819 -35.63131 -34.74217 -33.60989 -30.82064 -29.84552 -28.17020 -27.47756 -26.00346 -23.81806 -22.20012 -21.48824 -20.67458 -19.17253 -18.57208 -18.29667 -17.12302 -16.81147 -16.50188 -16.38976 -15.94824 -15.81032 -15.22576 -14.95294 -14.58404 -14.35957 -14.18798 -13.96747 -13.84564 -13.54899 -13.07391 -13.01977 -12.90571 -12.69122 -12.44351 -12.40248 -12.11941 -11.85909 -11.49759 -11.14423 -10.79147 -10.60424 -10.27083 -10.14622 -9.69789 -9.09208 -8.28959 -6.33662 -0.23255 0.47708 0.76291 1.34740 1.37468 1.48416 1.59157 1.69388 2.34513 2.34953 3.03202 3.04269 3.38921 3.72159 4.01100 4.10558 4.29036 4.35801 4.44390 4.48504 4.52055 4.57495 4.59243 4.62712 4.80355 4.90601 4.96962 4.98592 5.07799 5.20754 5.42214 5.49027 5.94168 6.22930 6.53764 6.60462 6.71750 6.83722 7.26504 7.29655 8.88225 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003968 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.690060 B = 7055.295579 C = 7849.203995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.508 3.492 4 O -0.581 6.581 5 C -0.059 4.059 6 C 0.046 3.954 7 N -0.485 5.485 8 C 0.061 3.939 9 C 0.126 3.874 10 N -0.542 5.542 11 C 0.058 3.942 12 C 0.173 3.827 13 C -0.521 4.521 14 H 0.029 0.971 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.954 3.046 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.250 1.250 21 C -0.246 4.246 22 S 0.166 5.834 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.424 0.576 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.016 0.984 34 H -0.009 1.009 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -25.126 -13.818 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.293 3.707 4 O -0.460 6.460 5 C -0.102 4.102 6 C -0.232 4.232 7 N -0.201 5.201 8 C -0.071 4.071 9 C -0.004 4.004 10 N -0.266 5.266 11 C -0.091 4.091 12 C 0.046 3.954 13 C -0.559 4.559 14 H 0.048 0.952 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.776 3.224 18 H -0.184 1.184 19 H -0.206 1.206 20 H -0.174 1.174 21 C -0.386 4.386 22 S 0.421 5.579 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.135 0.865 26 H 0.262 0.738 27 H 0.177 0.823 28 H 0.162 0.838 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.008 0.992 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.891 -24.475 -14.709 29.374 hybrid contribution 0.542 0.721 2.064 2.253 sum 7.434 -23.754 -12.644 27.917 Atomic orbital electron populations 1.21642 0.79083 1.04277 1.01021 1.45606 1.08147 1.08442 1.74907 1.20845 0.90453 0.83941 0.75489 1.90810 1.71306 1.33421 1.50506 1.20413 0.90936 0.89255 1.09602 1.26654 1.03349 1.01672 0.91560 1.65978 1.14554 1.06507 1.33045 1.20036 1.01367 0.90999 0.94688 1.20638 0.92066 0.94333 0.93407 1.61836 1.12439 1.11410 1.40964 1.21987 0.96020 0.94250 0.96829 1.19986 0.95906 0.89868 0.89621 1.21234 0.96371 1.12566 1.25743 0.95244 1.25915 1.00586 0.95543 0.97016 1.70068 1.30845 1.19933 1.38202 0.85623 0.79185 0.79499 0.78064 1.18413 1.20646 1.17354 1.27083 1.10713 1.05116 0.95675 1.83355 1.59145 1.04326 1.11064 0.94294 0.93301 0.86535 0.73848 0.82253 0.83763 0.87972 0.93877 0.94204 0.91930 0.96527 0.99160 0.94231 0.92333 0.79175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.70 127.77 1.37 2.47 16 2 N -0.72 -9.03 5.71 -484.52 -2.77 -11.80 16 3 C 0.51 10.90 7.82 87.66 0.69 11.59 16 4 O -0.58 -20.13 16.03 -3.04 -0.05 -20.18 16 5 C -0.06 -0.91 6.28 29.10 0.18 -0.73 16 6 C 0.05 1.19 5.88 88.52 0.52 1.71 16 7 N -0.49 -16.03 9.21 -179.41 -1.65 -17.68 16 8 C 0.06 2.07 5.58 41.52 0.23 2.30 16 9 C 0.13 4.68 5.40 85.56 0.46 5.14 16 10 N -0.54 -25.45 4.74 -931.65 -4.42 -29.87 16 11 C 0.06 2.74 9.15 127.69 1.17 3.91 16 12 C 0.17 8.84 3.79 85.56 0.32 9.16 16 13 C -0.52 -32.11 9.07 25.60 0.23 -31.88 16 14 H 0.03 2.06 7.35 -2.91 -0.02 2.03 16 15 C 0.01 0.39 5.47 84.65 0.46 0.85 16 16 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 17 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 21 C -0.25 -7.14 11.12 66.78 0.74 -6.40 16 22 S 0.17 3.85 23.18 -56.49 -1.31 2.54 16 23 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.42 1.44 8.83 -92.70 -0.82 0.63 16 27 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.10 3.34 7.89 -2.38 -0.02 3.32 16 30 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.04 2.10 6.86 -2.39 -0.02 2.09 16 32 H 0.06 2.90 6.21 -2.39 -0.01 2.89 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H -0.01 -0.47 7.18 -2.38 -0.02 -0.49 16 35 H 0.04 1.90 7.36 -2.39 -0.02 1.88 16 36 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.19 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -86.19 326.34 -1.42 -87.61 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.21 Total: 5.60 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.38 Total: -1.88 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -8.54 Total: -120.78 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.31 Total: 2.54 kcal Total: -86.19 -1.42 -87.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.078 kcal (2) G-P(sol) polarization free energy of solvation -86.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds