Wall clock time and date at job start Tue Mar 31 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46696 * 2 1 4 4 C 1.46498 * 119.99972 * 269.99710 * 3 2 1 5 5 C 1.50697 * 109.46975 * 270.00216 * 4 3 2 6 6 H 1.08001 * 120.00685 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99927 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00207 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99904 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47124 * 90.00022 * 9 7 5 11 11 H 1.48498 * 109.47313 * 209.99674 * 9 7 5 12 12 H 1.48495 * 109.47525 * 330.00433 * 9 7 5 13 13 C 1.34781 * 120.00057 * 90.00035 * 3 2 1 14 14 O 1.21279 * 119.99984 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99850 * 359.97438 * 13 3 2 16 16 O 1.42895 * 109.47048 * 180.02562 * 15 13 3 17 17 C 1.42902 * 114.00272 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47375 * 179.97438 * 17 16 15 19 19 N 1.31130 * 126.54646 * 89.99852 * 18 17 16 20 20 C 1.34492 * 105.61399 * 179.97438 * 19 18 17 21 21 C 1.50700 * 126.29104 * 180.02562 * 20 19 18 22 22 N 1.29954 * 107.42242 * 359.97438 * 20 19 18 23 23 O 1.21293 * 110.25286 * 0.02562 * 22 20 19 24 24 H 1.09004 * 109.47201 * 299.99921 * 1 2 3 25 25 H 1.08998 * 109.47260 * 60.00244 * 1 2 3 26 26 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47517 * 240.00197 * 2 1 3 28 28 H 1.08998 * 109.47260 * 119.99756 * 2 1 3 29 29 H 1.09004 * 109.47207 * 30.00225 * 4 3 2 30 30 H 1.09000 * 109.46824 * 150.00427 * 4 3 2 31 31 H 0.96999 * 120.00029 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47270 * 59.99665 * 15 13 3 33 33 H 1.09002 * 109.47301 * 300.00388 * 15 13 3 34 34 H 1.09000 * 109.47047 * 59.99747 * 17 16 15 35 35 H 1.08997 * 109.47035 * 300.00089 * 17 16 15 36 36 H 1.08999 * 109.47105 * 269.97611 * 21 20 19 37 37 H 1.09005 * 109.47013 * 29.97723 * 21 20 19 38 38 H 1.08996 * 109.47115 * 149.97626 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 5.3913 2.1836 -3.2573 9 14 3.0130 3.4360 -3.9287 10 1 3.1156 4.8562 -3.5068 11 1 3.4067 3.3139 -5.3553 12 1 1.6135 2.9694 -3.7596 13 6 2.2428 2.0167 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 8 2.3002 2.1821 3.5584 17 6 2.0954 1.6027 4.8486 18 6 2.4510 2.6084 5.9131 19 7 1.6420 3.4806 6.4647 20 6 2.3913 4.1583 7.3525 21 6 1.9209 5.2753 8.2481 22 7 3.5952 3.6723 7.2969 23 8 3.6507 2.7810 6.4760 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1383 31 1 5.7176 2.5747 -4.0828 32 1 2.6210 0.4187 2.5302 33 1 0.9431 1.0125 2.5299 34 1 2.7281 0.7216 4.9558 35 1 1.0497 1.3143 4.9555 36 1 2.0499 6.2295 7.7372 37 1 0.8673 5.1304 8.4868 38 1 2.5054 5.2739 9.1681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114558960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:42 Heat of formation + Delta-G solvation = -30.551359 kcal Electronic energy + Delta-G solvation = -21868.375175 eV Core-core repulsion = 18328.124154 eV Total energy + Delta-G solvation = -3540.251021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.72865 -40.89945 -38.89826 -37.19377 -36.97034 -34.87481 -34.38804 -31.96363 -30.71246 -30.18777 -29.14429 -27.55535 -24.71818 -24.40969 -23.91177 -22.66283 -20.14209 -19.39633 -19.12215 -18.74083 -18.16669 -17.70384 -17.33324 -16.78614 -16.45108 -16.06375 -15.52770 -15.08362 -14.72951 -14.67730 -14.52293 -14.35843 -14.00322 -13.76064 -13.53234 -13.34602 -13.24429 -13.10840 -12.96243 -12.55341 -12.49090 -12.33348 -12.22394 -12.03573 -11.87419 -11.73819 -11.14236 -10.87146 -10.83496 -10.62422 -9.43707 -8.34324 -6.39123 -0.12612 0.99925 1.31715 1.36614 1.44283 1.57834 1.74315 2.06489 2.30622 2.54535 2.96375 3.00171 3.11412 3.62134 3.86050 4.05574 4.16000 4.22713 4.28205 4.33769 4.44780 4.47217 4.54119 4.66524 4.68374 4.80594 4.81438 4.90637 5.04517 5.05546 5.07118 5.44402 5.48887 5.62381 5.84504 6.24202 6.62613 6.69026 6.99844 7.21461 7.40753 8.82610 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.003438 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.537280 B = 8143.480674 C = 8727.831415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.597 5.597 4 C 0.226 3.774 5 C -0.536 4.536 6 H 0.031 0.969 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.235 1.235 13 C 0.492 3.508 14 O -0.591 6.591 15 C 0.061 3.939 16 O -0.399 6.399 17 C 0.151 3.849 18 C 0.188 3.812 19 N -0.486 5.486 20 C 0.161 3.839 21 C -0.063 4.063 22 N -0.406 5.406 23 O 0.073 5.927 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.426 -6.443 19.249 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.329 5.329 4 C 0.103 3.897 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.158 1.158 13 C 0.280 3.720 14 O -0.471 6.471 15 C -0.018 4.018 16 O -0.318 6.318 17 C 0.074 3.926 18 C -0.033 4.033 19 N -0.222 5.222 20 C -0.112 4.112 21 C -0.120 4.120 22 N -0.117 5.117 23 O 0.017 5.983 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.768 -5.162 19.627 24.523 hybrid contribution 0.499 0.517 -1.020 1.248 sum -13.269 -4.645 18.606 23.320 Atomic orbital electron populations 1.22194 0.93804 1.03876 1.02236 1.21912 0.95739 0.80506 1.04667 1.48013 1.64147 1.15509 1.05217 1.19296 0.94878 0.92922 0.82583 1.21590 0.97148 1.32053 1.06657 0.95046 1.25851 0.96702 0.97193 0.99046 1.70047 1.17412 1.46581 1.24538 0.85744 0.80659 0.78882 0.77840 1.20611 1.19904 1.15834 1.21128 0.77527 0.86660 0.86649 1.90680 1.47260 1.21147 1.87998 1.22463 1.04744 0.92272 0.82271 1.88011 1.89325 1.40906 1.13525 1.21095 1.05372 0.89522 0.76626 1.28915 0.80148 0.97131 0.97126 1.71913 1.32443 1.07490 1.10348 1.26747 0.85587 1.00936 0.97887 1.20385 1.03925 0.91331 0.96404 1.74637 1.22304 1.04026 1.10754 1.85268 1.34463 1.39915 1.38699 0.91533 0.93872 0.88400 0.90801 0.87514 0.92908 0.96862 0.92288 0.86258 0.85359 0.85110 0.84672 0.88438 0.87300 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.24 71.98 0.74 -2.19 16 2 C 0.09 2.33 5.93 86.38 0.51 2.84 16 3 N -0.60 -22.91 2.46 -826.15 -2.03 -24.94 16 4 C 0.23 10.89 4.23 85.63 0.36 11.25 16 5 C -0.54 -31.53 9.94 25.60 0.25 -31.27 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.01 0.60 5.47 84.66 0.46 1.06 16 8 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 9 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 13 C 0.49 19.49 7.75 87.66 0.68 20.17 16 14 O -0.59 -31.35 16.08 16.01 0.26 -31.09 16 15 C 0.06 1.43 4.97 71.24 0.35 1.78 16 16 O -0.40 -11.22 9.86 -129.94 -1.28 -12.50 16 17 C 0.15 2.49 6.56 71.24 0.47 2.96 16 18 C 0.19 4.53 8.14 88.38 0.72 5.25 16 19 N -0.49 -12.67 11.55 -303.19 -3.50 -16.17 16 20 C 0.16 3.94 8.22 138.46 1.14 5.07 16 21 C -0.06 -0.91 10.51 71.24 0.75 -0.16 16 22 N -0.41 -11.32 12.16 -60.32 -0.73 -12.05 16 23 O 0.07 1.98 11.31 74.85 0.85 2.83 16 24 H 0.07 1.02 7.22 -2.39 -0.02 1.01 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 28 H 0.11 1.81 6.44 -2.39 -0.02 1.80 16 29 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 30 H 0.01 0.70 6.85 -2.39 -0.02 0.69 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.12 1.95 7.40 -2.39 -0.02 1.93 16 33 H 0.13 1.80 7.18 -2.39 -0.02 1.78 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -90.70 331.20 3.19 -87.51 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.01 Total: 2.91 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.44 Total: 16.76 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.97 Total: -113.08 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.18 Total: -40.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -90.70 3.19 -87.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114558960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -90.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds