Wall clock time and date at job start Tue Mar 31 2020 02:55:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.47048 * 2 1
4 4 C 1.50706 * 109.47014 * 240.00144 * 2 1 3
5 5 H 1.08001 * 119.99919 * 239.99704 * 4 2 1
6 6 C 1.37872 * 119.99818 * 60.00494 * 4 2 1
7 7 N 1.31515 * 120.00252 * 359.97438 * 6 4 2
8 8 Si 1.86803 * 119.99821 * 180.02562 * 6 4 2
9 9 H 1.48496 * 109.47230 * 89.99227 * 8 6 4
10 10 H 1.48496 * 109.47126 * 209.99644 * 8 6 4
11 11 H 1.48507 * 109.46919 * 329.99099 * 8 6 4
12 12 N 1.46499 * 109.47359 * 120.00011 * 2 1 3
13 13 C 1.46506 * 119.99537 * 59.99712 * 12 2 1
14 14 C 1.34777 * 120.00199 * 240.00361 * 12 2 1
15 15 O 1.21283 * 119.99750 * 359.97438 * 14 12 2
16 16 C 1.50702 * 119.99928 * 180.27479 * 14 12 2
17 17 N 1.46491 * 109.46957 * 179.72354 * 16 14 12
18 18 C 1.46416 * 119.53998 * 89.99902 * 17 16 14
19 19 C 1.53035 * 109.52152 * 144.11992 * 18 17 16
20 20 C 1.50812 * 109.18383 * 46.69579 * 19 18 17
21 21 O 1.21236 * 120.01435 * 145.79064 * 20 19 18
22 22 N 1.34552 * 119.96537 * 325.76819 * 20 19 18
23 23 C 1.34292 * 120.93200 * 4.18892 * 22 20 19
24 24 O 1.21543 * 119.17630 * 192.26998 * 23 22 20
25 25 H 1.09000 * 109.47156 * 300.00199 * 1 2 3
26 26 H 1.08998 * 109.46768 * 59.99970 * 1 2 3
27 27 H 1.08995 * 109.47095 * 179.97438 * 1 2 3
28 28 H 0.97006 * 119.99714 * 180.02562 * 7 6 4
29 29 H 1.08998 * 109.46921 * 269.99744 * 13 12 2
30 30 H 1.08994 * 109.46996 * 30.00327 * 13 12 2
31 31 H 1.09001 * 109.46578 * 150.00190 * 13 12 2
32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 12
33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 12
34 34 H 1.08995 * 109.45985 * 264.13785 * 18 17 16
35 35 H 1.08999 * 109.45765 * 24.10813 * 18 17 16
36 36 H 1.08994 * 109.52198 * 166.60778 * 19 18 17
37 37 H 1.09004 * 109.51914 * 286.78457 * 19 18 17
38 38 H 0.97002 * 119.50251 * 184.41326 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1315
6 6 1.6993 -0.2392 -2.4827
7 7 0.9429 0.8298 -2.6034
8 14 2.3214 -1.1202 -4.0080
9 1 1.3428 -2.1616 -4.4119
10 1 2.4866 -0.1413 -5.1123
11 1 3.6294 -1.7582 -3.7123
12 7 2.0184 -0.6906 1.1961
13 6 1.6644 -2.0932 1.4279
14 6 2.7932 -0.0356 2.0833
15 8 3.0865 1.1254 1.8912
16 6 3.3007 -0.7479 3.3106
17 7 4.1188 0.1714 4.1054
18 6 3.4851 0.9921 5.1391
19 6 4.4357 1.1391 6.3294
20 6 5.8122 1.4915 5.8238
21 8 6.5272 2.2247 6.4726
22 7 6.2463 0.9914 4.6525
23 6 5.4405 0.2455 3.8794
24 8 5.9188 -0.3740 2.9494
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 0.7083 1.1610 -3.4844
29 1 0.7376 -2.1443 1.9993
30 1 1.5295 -2.5968 0.4708
31 1 2.4629 -2.5819 1.9863
32 1 2.4553 -1.0905 3.9075
33 1 3.9042 -1.6043 3.0102
34 1 3.2578 1.9772 4.7319
35 1 2.5627 0.5134 5.4679
36 1 4.0759 1.9301 6.9873
37 1 4.4793 0.1988 6.8790
38 1 7.1552 1.1698 4.3645
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000117252879.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:55:50
Heat of formation + Delta-G solvation = -112.743312 kcal
Electronic energy + Delta-G solvation = -22966.811718 eV
Core-core repulsion = 19422.996586 eV
Total energy + Delta-G solvation = -3543.815132 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.72079 -40.74355 -39.85104 -37.46674 -36.91152 -35.71157 -34.78960 -32.59796
-31.43161 -28.53993 -27.44244 -27.27316 -25.99010 -24.29883 -22.95376 -20.59389
-19.68601 -19.31785 -18.78577 -18.51693 -18.04075 -17.60041 -17.02119 -16.49186
-16.32960 -15.96090 -15.68651 -15.47620 -15.40888 -14.65836 -14.41064 -14.03857
-13.94666 -13.55987 -13.43597 -13.06425 -13.04059 -12.80315 -12.71259 -12.62564
-12.46746 -12.17437 -12.13704 -11.85986 -11.38393 -11.37267 -11.18355 -10.95991
-10.52433 -9.83405 -9.27582 -8.14878 -6.30812 0.65946 1.22618 1.39132
1.41844 1.51144 1.81756 1.98039 2.20137 2.37101 2.58325 3.13061
3.41156 3.65311 3.76329 4.01903 4.15419 4.34419 4.46293 4.53054
4.62843 4.80145 4.84088 4.87532 4.94144 4.95572 5.06530 5.10547
5.17027 5.43783 5.50498 5.64566 5.69084 6.07772 6.19023 6.30297
6.43451 6.77823 6.86689 7.04155 7.33805 7.51446 8.88914
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.028447 B = 0.004150 C = 0.003969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.042262 B = 6744.726921 C = 7052.560513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.262 3.738
3 H 0.003 0.997
4 C -0.539 4.539
5 H 0.058 0.942
6 C 0.015 3.985
7 N -0.917 5.917
8 Si 0.961 3.039
9 H -0.263 1.263
10 H -0.287 1.287
11 H -0.275 1.275
12 N -0.600 5.600
13 C 0.075 3.925
14 C 0.475 3.525
15 O -0.602 6.602
16 C 0.122 3.878
17 N -0.595 5.595
18 C 0.103 3.897
19 C -0.141 4.141
20 C 0.522 3.478
21 O -0.541 6.541
22 N -0.675 5.675
23 C 0.709 3.291
24 O -0.598 6.598
25 H 0.025 0.975
26 H 0.063 0.937
27 H 0.049 0.951
28 H 0.264 0.736
29 H 0.080 0.920
30 H 0.063 0.937
31 H 0.091 0.909
32 H 0.170 0.830
33 H 0.118 0.882
34 H 0.061 0.939
35 H 0.149 0.851
36 H 0.152 0.848
37 H 0.149 0.851
38 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.227 -6.581 19.964 21.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.159 3.841
3 H 0.021 0.979
4 C -0.577 4.577
5 H 0.076 0.924
6 C -0.184 4.184
7 N -0.556 5.556
8 Si 0.786 3.214
9 H -0.188 1.188
10 H -0.213 1.213
11 H -0.200 1.200
12 N -0.331 5.331
13 C -0.067 4.067
14 C 0.262 3.738
15 O -0.484 6.484
16 C -0.005 4.005
17 N -0.330 5.330
18 C -0.018 4.018
19 C -0.180 4.180
20 C 0.312 3.688
21 O -0.416 6.416
22 N -0.342 5.342
23 C 0.411 3.589
24 O -0.475 6.475
25 H 0.044 0.956
26 H 0.081 0.919
27 H 0.068 0.932
28 H 0.073 0.927
29 H 0.098 0.902
30 H 0.082 0.918
31 H 0.110 0.890
32 H 0.187 0.813
33 H 0.136 0.864
34 H 0.080 0.920
35 H 0.167 0.833
36 H 0.170 0.830
37 H 0.166 0.834
38 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges 0.685 -5.860 19.657 20.524
hybrid contribution 0.958 0.293 -1.750 2.016
sum 1.643 -5.568 17.908 18.825
Atomic orbital electron populations
1.21822 0.96668 1.00229 0.99959 1.18480 0.91843 0.91941 0.81804
0.97897 1.21617 1.31669 1.13004 0.91444 0.92407 1.25698 0.95147
0.95648 1.01938 1.70021 1.37412 1.23842 1.24313 0.85514 0.78798
0.78390 0.78672 1.18845 1.21254 1.20013 1.48244 1.49121 1.13550
1.22155 1.21950 1.01799 0.80117 1.02867 1.21942 0.78315 0.87262
0.86234 1.90629 1.59620 1.20009 1.78108 1.21598 0.97452 0.91229
0.90174 1.46730 1.04143 1.44138 1.37954 1.22014 0.98058 0.96335
0.85381 1.22376 0.87545 1.08909 0.99202 1.21860 0.90919 0.77078
0.78921 1.90772 1.59288 1.34941 1.56617 1.44280 1.17752 1.50621
1.21566 1.15772 0.82493 0.79411 0.81264 1.90995 1.75203 1.48773
1.32545 0.95630 0.91864 0.93234 0.92718 0.90204 0.91797 0.89021
0.81290 0.86384 0.92046 0.83305 0.83047 0.83379 0.73563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.96 8.97 71.98 0.65 -5.32 16
2 C 0.26 13.48 2.64 44.25 0.12 13.60 16
3 H 0.00 0.19 6.90 -2.38 -0.02 0.17 16
4 C -0.54 -29.63 7.99 25.60 0.20 -29.43 16
5 H 0.06 3.12 7.33 -2.91 -0.02 3.10 16
6 C 0.02 0.84 5.30 84.65 0.45 1.29 16
7 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16
8 Si 0.96 43.88 29.54 68.60 2.03 45.91 16
9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16
10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16
11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
12 N -0.60 -23.91 2.75 -826.77 -2.28 -26.18 16
13 C 0.07 2.05 9.24 127.77 1.18 3.23 16
14 C 0.47 18.27 7.74 87.66 0.68 18.95 16
15 O -0.60 -29.87 15.76 -3.04 -0.05 -29.91 16
16 C 0.12 2.83 4.38 85.64 0.37 3.21 16
17 N -0.59 -13.80 2.28 -845.67 -1.93 -15.73 16
18 C 0.10 1.41 6.64 86.41 0.57 1.98 16
19 C -0.14 -1.37 6.28 29.90 0.19 -1.19 16
20 C 0.52 10.72 7.76 87.73 0.68 11.40 16
21 O -0.54 -14.49 17.93 -2.89 -0.05 -14.55 16
22 N -0.67 -16.44 5.18 -441.71 -2.29 -18.73 16
23 C 0.71 20.83 8.21 179.36 1.47 22.30 16
24 O -0.60 -23.09 16.66 -3.85 -0.06 -23.16 16
25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16
26 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16
27 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16
28 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16
29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
30 H 0.06 2.02 7.02 -2.39 -0.02 2.00 16
31 H 0.09 1.81 6.43 -2.39 -0.02 1.79 16
32 H 0.17 1.87 7.79 -2.38 -0.02 1.85 16
33 H 0.12 2.75 6.68 -2.39 -0.02 2.73 16
34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
35 H 0.15 0.71 7.79 -2.39 -0.02 0.69 16
36 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16
37 H 0.15 0.55 8.14 -2.38 -0.02 0.53 16
38 H 0.42 10.07 8.86 -92.71 -0.82 9.25 16
Total: -1.00 -86.75 319.44 2.45 -84.30
By element:
Atomic # 1 Polarization: 10.86 SS G_CDS: 0.28 Total: 11.14 kcal
Atomic # 6 Polarization: 33.45 SS G_CDS: 6.56 Total: 40.01 kcal
Atomic # 7 Polarization: -107.49 SS G_CDS: -6.25 Total: -113.74 kcal
Atomic # 8 Polarization: -67.45 SS G_CDS: -0.16 Total: -67.62 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal
Total: -86.75 2.45 -84.30 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117252879.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.446 kcal
(2) G-P(sol) polarization free energy of solvation -86.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds