Wall clock time and date at job start Tue Mar 31 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.50703 * 109.46871 * 269.99501 * 3 2 1 5 5 H 1.07998 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00011 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99586 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99962 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47167 * 60.00444 * 8 6 4 10 10 H 1.48506 * 109.46866 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47193 * 299.99997 * 8 6 4 12 12 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00166 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99762 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.46925 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47340 * 180.02562 * 15 14 12 17 17 N 1.46500 * 109.47364 * 179.97438 * 16 15 14 18 18 C 1.34764 * 124.17692 * 269.72020 * 17 16 15 19 19 O 1.21234 * 127.15807 * 0.02562 * 18 17 16 20 20 C 1.51589 * 105.68476 * 179.97438 * 18 17 16 21 21 N 1.47317 * 103.58994 * 0.32129 * 20 18 17 22 22 C 1.33798 * 124.17611 * 90.01839 * 17 16 15 23 23 O 1.21532 * 123.77118 * 359.96943 * 22 17 16 24 24 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 25 25 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 26 26 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 27 27 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 28 28 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 29 29 H 0.97008 * 119.99716 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47318 * 299.99141 * 14 12 2 31 31 H 1.09000 * 109.47161 * 59.99772 * 14 12 2 32 32 H 1.09004 * 109.46930 * 299.99901 * 15 14 12 33 33 H 1.09004 * 109.47059 * 59.99503 * 15 14 12 34 34 H 1.09004 * 109.46785 * 299.99692 * 16 15 14 35 35 H 1.09000 * 109.47196 * 59.99588 * 16 15 14 36 36 H 1.08999 * 110.76539 * 241.71911 * 20 18 17 37 37 H 1.08996 * 110.55931 * 118.83176 * 20 18 17 38 38 H 0.96990 * 126.68675 * 179.76756 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5551 3.6170 -0.6732 8 14 3.4390 3.4161 -3.4340 9 1 2.1417 3.5940 -4.1345 10 1 4.1814 4.7022 -3.4340 11 1 4.2414 2.3807 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 6 1.6145 -4.9603 -0.0001 17 7 2.5665 -6.0738 -0.0007 18 6 3.0542 -6.6522 -1.1160 19 8 2.7981 -6.3601 -2.2644 20 6 3.9907 -7.7433 -0.6358 21 7 3.9085 -7.6487 0.8321 22 6 3.0547 -6.6459 1.1059 23 8 2.7583 -6.2996 2.2325 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 4.0319 4.4430 -0.8505 30 1 0.7584 -2.5299 0.8903 31 1 0.7589 -2.5302 -0.8897 32 1 3.0061 -3.5775 -0.8895 33 1 3.0062 -3.5775 0.8905 34 1 0.9876 -5.0183 0.8897 35 1 0.9881 -5.0177 -0.8903 36 1 5.0092 -7.5556 -0.9757 37 1 3.6474 -8.7199 -0.9770 38 1 4.3787 -8.2015 1.4756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126702587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:30 Heat of formation + Delta-G solvation = -80.120620 kcal Electronic energy + Delta-G solvation = -22005.589058 eV Core-core repulsion = 18463.188552 eV Total energy + Delta-G solvation = -3542.400506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.54588 -38.99746 -38.79883 -36.33976 -35.85992 -34.75548 -32.92183 -32.39636 -28.61060 -27.95683 -26.92889 -25.60094 -23.47446 -23.08900 -21.78006 -20.53293 -18.48975 -18.17016 -17.33505 -16.98443 -16.52572 -16.23722 -15.69137 -15.56104 -15.36003 -15.08496 -14.45147 -14.35449 -14.13082 -13.92789 -13.91017 -12.84534 -12.62717 -12.38111 -12.12351 -11.88944 -11.73767 -11.57910 -11.20425 -11.05964 -10.89546 -10.73069 -10.52682 -10.48585 -10.13745 -10.01428 -9.81574 -9.61645 -8.86613 -8.40929 -7.60596 -6.01804 -4.06648 1.36222 1.93375 2.74743 2.83223 3.33693 3.37861 3.40163 3.49268 3.68199 4.00397 4.46217 4.46858 4.60809 4.80683 4.88425 5.00739 5.19158 5.23236 5.31650 5.42207 5.48311 5.60154 5.63043 5.85166 5.95800 6.15032 6.24541 6.35999 6.41255 6.77837 7.08696 7.10415 7.47574 7.57651 7.83999 7.94685 8.26344 8.45881 8.92885 9.13683 9.58352 11.06255 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.003372 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.831084 B = 8302.211446 C = 8752.668094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.543 6.543 14 C -0.135 4.135 15 C -0.119 4.119 16 C 0.119 3.881 17 N -0.574 5.574 18 C 0.519 3.481 19 O -0.465 6.465 20 C 0.062 3.938 21 N -0.731 5.731 22 C 0.701 3.299 23 O -0.539 6.539 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -23.734 1.755 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.421 6.421 14 C -0.176 4.176 15 C -0.158 4.158 16 C -0.002 4.002 17 N -0.321 5.321 18 C 0.306 3.694 19 O -0.334 6.334 20 C -0.066 4.066 21 N -0.397 5.397 22 C 0.401 3.599 23 O -0.412 6.412 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.173 -23.089 1.753 23.529 hybrid contribution 0.355 0.198 -0.754 0.856 sum -3.818 -22.891 0.999 23.229 Atomic orbital electron populations 1.21639 0.81452 1.02576 1.00396 1.48164 1.06184 1.07892 1.71406 1.19273 0.92561 0.78166 0.97434 1.21413 1.36552 1.06288 0.92328 0.92526 1.24945 0.95355 0.96398 0.97459 1.69929 1.38350 1.14379 1.30794 0.86550 0.78364 0.77801 0.84656 1.20240 1.21165 1.20175 1.20263 0.88108 0.85126 0.77501 1.90667 1.14006 1.87277 1.50134 1.21570 0.99038 0.93194 1.03805 1.21650 0.98360 0.91160 1.04632 1.21817 0.90152 0.83510 1.04731 1.46398 1.43839 1.33883 1.07943 1.20900 0.80727 0.82862 0.84937 1.90852 1.59497 1.65178 1.17905 1.22473 1.02315 1.00405 0.81363 1.45423 1.49019 1.37500 1.07732 1.15890 0.79553 0.80087 0.84343 1.91035 1.63223 1.66549 1.20401 0.93747 0.90838 0.92385 0.95046 0.93892 0.92674 0.89240 0.89159 0.90555 0.90395 0.88436 0.88592 0.85812 0.85978 0.71509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.94 16 2 N -0.60 -13.09 2.86 -182.95 -0.52 -13.61 16 3 C 0.24 6.58 5.16 -5.19 -0.03 6.55 16 4 C -0.53 -15.30 9.39 -34.44 -0.32 -15.62 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.50 10.65 7.67 -10.98 -0.08 10.57 16 13 O -0.54 -14.05 15.56 5.56 0.09 -13.96 16 14 C -0.14 -1.94 4.25 -27.88 -0.12 -2.06 16 15 C -0.12 -1.69 4.83 -26.73 -0.13 -1.82 16 16 C 0.12 1.29 5.70 -4.04 -0.02 1.26 16 17 N -0.57 -6.15 2.60 -120.73 -0.31 -6.47 16 18 C 0.52 5.03 8.32 -10.55 -0.09 4.94 16 19 O -0.47 -5.99 17.75 5.60 0.10 -5.89 16 20 C 0.06 0.30 7.97 -4.31 -0.03 0.27 16 21 N -0.73 -4.63 6.58 -65.73 -0.43 -5.06 16 22 C 0.70 7.65 8.62 -88.02 -0.76 6.89 16 23 O -0.54 -7.91 17.48 5.34 0.09 -7.81 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 31 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 32 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.10 0.96 7.86 -51.93 -0.41 0.56 16 35 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 36 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.44 1.67 8.96 -40.82 -0.37 1.30 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -38.78 331.68 -6.55 -45.33 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.21 Total: -2.93 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -1.07 Total: 14.58 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.53 Total: -51.52 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: 0.28 Total: -27.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.78 -6.55 -45.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126702587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.790 kcal (2) G-P(sol) polarization free energy of solvation -38.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds