Wall clock time and date at job start Tue Mar 31 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 110.99697 * 2 1 4 4 C 1.46894 * 111.00304 * 123.95365 * 2 1 3 5 5 C 1.53002 * 109.47328 * 66.04493 * 4 2 1 6 6 N 1.46500 * 109.47217 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99924 * 179.72468 * 6 5 4 8 8 S 1.71202 * 120.00055 * 0.28038 * 7 6 5 9 9 N 1.34777 * 120.00204 * 180.27781 * 7 6 5 10 10 C 1.40608 * 119.99974 * 174.62156 * 9 7 6 11 11 C 1.40653 * 126.08162 * 325.06439 * 10 9 7 12 12 N 1.30914 * 108.38625 * 179.81560 * 11 10 9 13 13 N 1.40073 * 108.40668 * 0.43937 * 12 11 10 14 14 C 1.37321 * 126.06690 * 179.69365 * 13 12 11 15 15 H 1.08005 * 119.99465 * 180.02562 * 14 13 12 16 16 C 1.38979 * 120.00388 * 0.02970 * 14 13 12 17 17 N 1.31303 * 119.99705 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47337 * 89.99700 * 18 16 14 20 20 H 1.48503 * 109.46851 * 209.99856 * 18 16 14 21 21 H 1.48500 * 109.46821 * 329.99172 * 18 16 14 22 22 C 1.35671 * 126.07758 * 145.37266 * 10 9 7 23 23 H 1.08994 * 109.47284 * 296.04537 * 1 2 3 24 24 H 1.08996 * 109.47396 * 56.04722 * 1 2 3 25 25 H 1.09003 * 109.46966 * 176.04650 * 1 2 3 26 26 H 1.08998 * 109.46988 * 183.95471 * 3 2 1 27 27 H 1.08995 * 109.47172 * 303.95314 * 3 2 1 28 28 H 1.08998 * 109.46962 * 63.95385 * 3 2 1 29 29 H 1.09004 * 109.47153 * 306.04838 * 4 2 1 30 30 H 1.08997 * 109.47448 * 186.05312 * 4 2 1 31 31 H 1.08999 * 109.46444 * 60.00484 * 5 4 2 32 32 H 1.08990 * 109.47293 * 300.00455 * 5 4 2 33 33 H 0.97004 * 119.99770 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99707 * 354.62282 * 9 7 6 35 35 H 1.07993 * 125.80567 * 359.97438 * 11 10 9 36 36 H 0.97000 * 119.99135 * 179.97438 * 17 16 14 37 37 H 1.08000 * 126.24668 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9704 6 7 2.1571 -3.0065 2.1045 7 6 1.9515 -4.3367 2.1743 8 16 1.0824 -5.1347 0.9338 9 7 2.4303 -5.0387 3.2205 10 6 2.1204 -6.4038 3.3519 11 6 0.9072 -7.0165 2.9899 12 7 0.9945 -8.2952 3.2567 13 7 2.2579 -8.5469 3.8067 14 6 2.7298 -9.7675 4.2229 15 1 3.7249 -9.8498 4.6348 16 6 1.9272 -10.8968 4.1141 17 7 0.7174 -10.7966 3.6136 18 14 2.5690 -12.5570 4.6810 19 1 2.2280 -12.7571 6.1123 20 1 1.9456 -13.6324 3.8685 21 1 4.0438 -12.6013 4.5125 22 6 2.9364 -7.3634 3.8560 23 1 -0.3633 0.4512 0.9232 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0826 1.3433 -0.0709 27 1 1.5897 1.9163 -0.8524 28 1 1.7042 1.8724 0.9233 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1756 31 1 2.0659 -2.6213 0.0452 32 1 0.5473 -2.3475 0.9323 33 1 2.6493 -2.5543 2.8075 34 1 2.9885 -4.6020 3.8827 35 1 0.0504 -6.5174 2.5620 36 1 0.1574 -11.5850 3.5374 37 1 3.9398 -7.2176 4.2279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145461742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:56 Heat of formation + Delta-G solvation = 116.201553 kcal Electronic energy + Delta-G solvation = -19219.636484 eV Core-core repulsion = 16160.794769 eV Total energy + Delta-G solvation = -3058.841716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.75145 -38.69258 -37.44388 -34.83436 -33.26880 -30.35291 -29.81846 -27.91386 -27.59074 -25.02996 -24.22239 -23.33186 -21.54453 -20.66805 -19.79770 -18.17603 -17.50650 -16.56104 -16.05364 -15.59870 -15.37327 -15.08980 -14.71670 -14.63653 -14.14623 -13.71332 -13.52750 -13.05537 -12.81251 -12.67886 -12.17351 -12.06891 -11.81347 -11.69225 -11.54566 -11.25087 -11.13531 -10.90220 -10.53034 -10.49871 -9.71059 -9.16989 -8.75894 -8.74825 -8.12966 -7.42588 -6.82927 -6.56700 -6.45550 -4.23556 1.84205 2.45280 2.96757 2.98867 3.06304 3.10989 3.55420 3.66947 3.84996 4.04620 4.38944 4.54036 4.73432 4.83791 4.87893 5.00978 5.01766 5.12348 5.28216 5.29031 5.50526 5.62954 5.79527 5.87940 6.19807 6.22180 6.43654 6.60993 6.62849 6.68627 6.92519 7.13622 7.22206 7.43667 7.84616 7.88244 8.24830 8.67995 9.34498 9.64831 10.38854 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.060259 B = 0.002933 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.548799 B = 9544.964697 C = 9844.982279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.134 3.866 6 N -0.701 5.701 7 C 0.549 3.451 8 S -0.643 6.643 9 N -0.568 5.568 10 C -0.086 4.086 11 C 0.028 3.972 12 N -0.262 5.262 13 N -0.140 5.140 14 C -0.323 4.323 15 H 0.116 0.884 16 C 0.047 3.953 17 N -0.765 5.765 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.264 1.264 22 C -0.063 4.063 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.389 0.611 34 H 0.391 0.609 35 H 0.173 0.827 36 H 0.276 0.724 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 19.254 -0.052 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.010 3.990 6 N -0.335 5.335 7 C 0.189 3.811 8 S -0.517 6.517 9 N -0.187 5.187 10 C -0.192 4.192 11 C -0.152 4.152 12 N -0.090 5.090 13 N 0.096 4.904 14 C -0.455 4.455 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.390 5.390 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.217 4.217 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.224 0.776 34 H 0.226 0.774 35 H 0.190 0.810 36 H 0.087 0.913 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.736 17.118 -1.481 17.399 hybrid contribution 1.537 1.438 2.269 3.095 sum 4.274 18.556 0.787 19.058 Atomic orbital electron populations 1.22537 0.86691 1.03378 1.00552 1.61801 1.08596 1.13824 1.42247 1.22395 1.00849 0.88398 1.00636 1.22290 1.00694 0.93519 0.92125 1.21478 1.00727 0.88069 0.88754 1.44617 1.57643 1.04851 1.26347 1.22126 0.86827 0.83910 0.88208 1.93279 1.52983 1.72402 1.33028 1.41453 1.47092 1.09237 1.20935 1.16848 0.97649 0.80954 1.23782 1.23998 0.97330 0.92016 1.01823 1.78353 0.98180 1.13046 1.19457 1.44599 1.08676 1.04425 1.32741 1.19883 1.01496 0.81590 1.42551 0.86597 1.25655 0.95140 1.00519 0.95765 1.70220 1.06378 1.30630 1.31811 0.85822 0.79455 0.79931 0.78915 1.19590 1.20001 1.18796 1.21287 0.98618 0.86464 1.15306 0.95537 0.91106 0.90199 0.91251 0.91021 0.95655 0.94315 0.90247 0.88994 0.89816 0.77577 0.77357 0.80980 0.91336 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.06 0.56 0.69 16 2 N -0.54 -4.68 5.02 -251.27 -1.26 -5.94 16 3 C 0.03 0.17 9.57 60.07 0.57 0.74 16 4 C 0.04 0.35 5.07 -3.83 -0.02 0.33 16 5 C 0.13 1.52 5.05 -4.04 -0.02 1.49 16 6 N -0.70 -8.28 5.56 -62.03 -0.34 -8.63 16 7 C 0.55 9.38 7.91 -86.92 -0.69 8.69 16 8 S -0.64 -14.36 25.08 -107.50 -2.70 -17.06 16 9 N -0.57 -9.68 5.47 -11.53 -0.06 -9.74 16 10 C -0.09 -1.92 6.37 -83.84 -0.53 -2.45 16 11 C 0.03 0.72 10.01 -17.03 -0.17 0.54 16 12 N -0.26 -7.57 10.40 30.80 0.32 -7.24 16 13 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 14 C -0.32 -8.49 10.25 -14.82 -0.15 -8.64 16 15 H 0.12 2.71 7.83 -52.48 -0.41 2.30 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 17 N -0.76 -21.34 11.81 55.49 0.66 -20.68 16 18 Si 0.94 18.87 29.55 -169.99 -5.02 13.85 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.06 -1.47 11.49 -16.39 -0.19 -1.65 16 23 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.08 0.73 6.47 -51.93 -0.34 0.39 16 26 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 30 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 31 H 0.09 1.24 8.00 -51.93 -0.42 0.83 16 32 H 0.08 1.07 6.40 -51.93 -0.33 0.73 16 33 H 0.39 3.20 8.49 -40.82 -0.35 2.85 16 34 H 0.39 4.96 8.85 -40.82 -0.36 4.59 16 35 H 0.17 4.43 6.42 -51.85 -0.33 4.10 16 36 H 0.28 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.14 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -34.50 324.15 -9.35 -43.84 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.04 Total: 9.69 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.73 Total: 0.86 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.74 Total: -56.08 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: -14.36 SS G_CDS: -2.70 Total: -17.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.50 -9.35 -43.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145461742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.045 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds