Wall clock time and date at job start Tue Mar 31 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00328 * 2 1 4 4 C 1.53002 * 109.47199 * 89.99783 * 3 2 1 5 5 C 1.52996 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47323 * 180.02562 * 5 4 3 7 7 C 1.36890 * 126.39537 * 270.03108 * 6 5 4 8 8 C 1.34669 * 106.81617 * 179.97438 * 7 6 5 9 9 N 1.34134 * 108.02026 * 0.02562 * 8 7 6 10 10 C 1.30493 * 109.25480 * 0.02562 * 9 8 7 11 11 C 1.34778 * 119.99915 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00200 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00236 * 0.02562 * 11 2 1 14 14 S 1.80993 * 109.47272 * 179.97438 * 13 11 2 15 15 C 1.76201 * 99.99931 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00181 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47190 * 60.00251 * 19 17 15 21 21 H 1.48506 * 109.47431 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47371 * 299.99975 * 19 17 15 23 23 H 1.08997 * 109.46963 * 89.99873 * 1 2 3 24 24 H 1.08998 * 109.47055 * 209.99970 * 1 2 3 25 25 H 1.09003 * 109.46712 * 329.99903 * 1 2 3 26 26 H 1.09002 * 109.47142 * 330.00217 * 3 2 1 27 27 H 1.08998 * 109.47581 * 209.99680 * 3 2 1 28 28 H 1.09006 * 109.47212 * 60.00173 * 4 3 2 29 29 H 1.09002 * 109.47266 * 300.00402 * 4 3 2 30 30 H 1.09002 * 109.47343 * 60.00395 * 5 4 3 31 31 H 1.08998 * 109.47519 * 299.99774 * 5 4 3 32 32 H 1.07996 * 126.59258 * 359.97438 * 7 6 5 33 33 H 1.08002 * 125.99042 * 180.26007 * 8 7 6 34 34 H 1.08006 * 125.64594 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47202 * 299.99762 * 13 11 2 36 36 H 1.09001 * 109.46829 * 59.99315 * 13 11 2 37 37 H 0.96996 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2170 3.0356 1.4425 6 7 3.4618 3.4583 2.8237 7 6 2.6427 4.2428 3.5903 8 6 3.2454 4.3831 4.7863 9 7 4.4012 3.7033 4.7509 10 6 4.5378 3.1476 3.5781 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3854 -2.4724 0.0005 14 16 2.5615 -3.8481 0.0005 15 6 1.4414 -5.2082 0.0013 16 1 0.3762 -5.0305 0.0012 17 6 1.9281 -6.5081 0.0010 18 7 3.2265 -6.7248 0.0006 19 14 0.7406 -7.9500 0.0011 20 1 -0.1147 -7.8870 -1.2112 21 1 1.5067 -9.2223 0.0013 22 1 -0.1141 -7.8874 1.2138 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6085 2.0284 -0.5138 27 1 3.1500 1.1383 -0.5138 28 1 3.0416 0.9507 1.9564 29 1 1.5001 1.8407 1.9564 30 1 2.6276 3.7951 0.9288 31 1 4.1695 2.9057 0.9286 32 1 1.6953 4.6675 3.2930 33 1 2.8632 4.9416 5.6280 34 1 5.3725 2.5387 3.2635 35 1 0.7584 -2.5300 0.8903 36 1 0.7590 -2.5302 -0.8897 37 1 3.5666 -7.6332 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161682380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:17 Heat of formation + Delta-G solvation = 26.300617 kcal Electronic energy + Delta-G solvation = -19069.697187 eV Core-core repulsion = 15974.664323 eV Total energy + Delta-G solvation = -3095.032864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17034 -39.60943 -36.26841 -34.79698 -32.45953 -31.78993 -29.64296 -29.11984 -27.14354 -25.67606 -25.24507 -22.53911 -21.49026 -21.00363 -19.34212 -17.77758 -17.58550 -16.68334 -16.03769 -15.76164 -15.16680 -15.12219 -14.83210 -14.25404 -14.08221 -13.94224 -13.51564 -13.32708 -13.13273 -12.82150 -12.64306 -12.52677 -12.27657 -12.16140 -11.87001 -11.10994 -11.07701 -11.06228 -10.79211 -10.13352 -9.86957 -9.84673 -9.45999 -9.08906 -8.71938 -8.64610 -8.27957 -6.54378 -6.24554 -3.95876 1.87969 2.53380 2.88099 2.96007 3.04547 3.21233 3.23122 3.26935 3.54165 4.17257 4.27433 4.55641 4.59327 4.63831 4.70265 4.82076 5.02111 5.03507 5.06260 5.10541 5.24684 5.28018 5.37278 5.48148 5.52866 5.60587 5.72354 5.81733 5.90045 6.07259 6.09502 6.50737 6.56683 7.00072 7.39615 7.56120 7.92897 8.31754 8.44616 9.20560 10.82843 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.002968 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.882447 B = 9433.037812 C = 9825.865605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.152 4.152 5 C 0.108 3.892 6 N -0.457 5.457 7 C -0.060 4.060 8 C -0.033 4.033 9 N -0.499 5.499 10 C 0.186 3.814 11 C 0.533 3.467 12 O -0.514 6.514 13 C -0.151 4.151 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 21.448 0.987 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.192 4.192 5 C -0.015 4.015 6 N -0.139 5.139 7 C -0.193 4.193 8 C -0.181 4.181 9 N -0.217 5.217 10 C -0.096 4.096 11 C 0.321 3.679 12 O -0.388 6.388 13 C -0.301 4.301 14 S 0.165 5.835 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.221 0.779 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.588 21.200 1.476 21.552 hybrid contribution -2.965 -0.876 -0.645 3.158 sum -6.552 20.323 0.831 21.370 Atomic orbital electron populations 1.21776 0.79511 1.03159 1.01856 1.47843 1.06896 1.05505 1.75928 1.21223 0.98492 0.85321 0.95164 1.22373 1.01267 0.96374 0.99174 1.21854 1.02742 0.97212 0.79727 1.45624 1.17496 1.37953 1.12874 1.22710 0.99578 1.03154 0.93824 1.22309 0.93685 1.04504 0.97610 1.70308 1.19273 1.12766 1.19324 1.25094 0.93414 1.03382 0.87758 1.20395 0.87964 0.84608 0.74922 1.90693 1.13704 1.86793 1.47578 1.23561 1.04618 0.97225 1.04741 1.85391 1.08008 0.93342 1.96721 1.22808 0.94242 0.92192 1.59221 0.90989 1.24993 0.95692 0.98381 0.94476 1.70004 1.11761 1.21825 1.46659 0.86222 0.80177 0.80284 0.78805 1.19926 1.20773 1.19920 0.92560 0.90560 0.91499 0.90584 0.89398 0.90180 0.91140 0.88953 0.88358 0.81134 0.81552 0.77877 0.89252 0.89217 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.85 0.61 1.35 16 2 N -0.63 -7.91 2.87 -181.57 -0.52 -8.43 16 3 C 0.12 1.17 5.41 -4.04 -0.02 1.14 16 4 C -0.15 -1.37 5.86 -26.73 -0.16 -1.52 16 5 C 0.11 0.73 6.15 -4.04 -0.02 0.71 16 6 N -0.46 -4.26 2.75 -118.58 -0.33 -4.58 16 7 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 8 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 9 N -0.50 -6.61 11.25 -14.66 -0.16 -6.77 16 10 C 0.19 2.07 12.56 -90.38 -1.14 0.93 16 11 C 0.53 9.61 7.69 -10.98 -0.08 9.52 16 12 O -0.51 -11.11 15.44 5.55 0.09 -11.03 16 13 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 19 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 25 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 36 H 0.09 1.64 8.11 -51.91 -0.42 1.22 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -36.40 334.56 -8.52 -44.92 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.29 Total: -1.40 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.85 Total: -4.81 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.28 Total: -45.05 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.40 -8.52 -44.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161682380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.224 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds