Wall clock time and date at job start Tue Mar 31 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00328 * 2 1 4 4 C 1.53002 * 109.47199 * 89.99783 * 3 2 1 5 5 C 1.52996 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47323 * 180.02562 * 5 4 3 7 7 C 1.36890 * 126.39537 * 270.03108 * 6 5 4 8 8 C 1.34669 * 106.81617 * 179.97438 * 7 6 5 9 9 N 1.34134 * 108.02026 * 0.02562 * 8 7 6 10 10 C 1.30493 * 109.25480 * 0.02562 * 9 8 7 11 11 C 1.34778 * 119.99915 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00200 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00236 * 0.02562 * 11 2 1 14 14 S 1.80993 * 109.47272 * 179.97438 * 13 11 2 15 15 C 1.76201 * 99.99931 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00181 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47190 * 60.00251 * 19 17 15 21 21 H 1.48506 * 109.47431 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47371 * 299.99975 * 19 17 15 23 23 H 1.08997 * 109.46963 * 89.99873 * 1 2 3 24 24 H 1.08998 * 109.47055 * 209.99970 * 1 2 3 25 25 H 1.09003 * 109.46712 * 329.99903 * 1 2 3 26 26 H 1.09002 * 109.47142 * 330.00217 * 3 2 1 27 27 H 1.08998 * 109.47581 * 209.99680 * 3 2 1 28 28 H 1.09006 * 109.47212 * 60.00173 * 4 3 2 29 29 H 1.09002 * 109.47266 * 300.00402 * 4 3 2 30 30 H 1.09002 * 109.47343 * 60.00395 * 5 4 3 31 31 H 1.08998 * 109.47519 * 299.99774 * 5 4 3 32 32 H 1.07996 * 126.59258 * 359.97438 * 7 6 5 33 33 H 1.08002 * 125.99042 * 180.26007 * 8 7 6 34 34 H 1.08006 * 125.64594 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47202 * 299.99762 * 13 11 2 36 36 H 1.09001 * 109.46829 * 59.99315 * 13 11 2 37 37 H 0.96996 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2170 3.0356 1.4425 6 7 3.4618 3.4583 2.8237 7 6 2.6427 4.2428 3.5903 8 6 3.2454 4.3831 4.7863 9 7 4.4012 3.7033 4.7509 10 6 4.5378 3.1476 3.5781 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3854 -2.4724 0.0005 14 16 2.5615 -3.8481 0.0005 15 6 1.4414 -5.2082 0.0013 16 1 0.3762 -5.0305 0.0012 17 6 1.9281 -6.5081 0.0010 18 7 3.2265 -6.7248 0.0006 19 14 0.7406 -7.9500 0.0011 20 1 -0.1147 -7.8870 -1.2112 21 1 1.5067 -9.2223 0.0013 22 1 -0.1141 -7.8874 1.2138 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6085 2.0284 -0.5138 27 1 3.1500 1.1383 -0.5138 28 1 3.0416 0.9507 1.9564 29 1 1.5001 1.8407 1.9564 30 1 2.6276 3.7951 0.9288 31 1 4.1695 2.9057 0.9286 32 1 1.6953 4.6675 3.2930 33 1 2.8632 4.9416 5.6280 34 1 5.3725 2.5387 3.2635 35 1 0.7584 -2.5300 0.8903 36 1 0.7590 -2.5302 -0.8897 37 1 3.5666 -7.6332 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161682380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:17 Heat of formation + Delta-G solvation = 3.189648 kcal Electronic energy + Delta-G solvation = -19070.699354 eV Core-core repulsion = 15974.664323 eV Total energy + Delta-G solvation = -3096.035031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.91392 -40.86441 -37.28021 -35.70837 -34.59861 -32.72361 -30.63978 -30.21497 -27.96293 -27.70411 -26.26686 -23.37982 -22.24931 -21.70877 -20.65808 -19.55902 -18.42865 -17.94367 -17.10090 -16.89710 -16.85906 -16.07870 -15.95948 -15.80837 -14.94486 -14.83990 -14.56902 -14.51848 -14.36731 -14.05273 -13.58030 -13.45797 -13.26289 -13.17588 -12.91732 -12.89674 -12.84579 -12.61904 -11.86046 -11.72017 -11.14088 -10.96208 -10.92588 -10.60828 -10.29069 -9.71573 -9.42642 -8.69186 -8.35876 -6.14587 1.13697 1.25542 1.43015 1.45359 1.54422 1.55698 1.90553 2.17693 2.23298 2.26885 2.98215 3.25255 3.65609 3.78497 3.87117 3.89768 3.99667 4.20461 4.22286 4.22512 4.35556 4.42200 4.46850 4.59199 4.61954 4.74423 4.76539 4.90889 4.94533 5.13390 5.38224 5.39828 5.58336 5.86073 6.17893 6.24380 6.28160 7.05179 7.13409 7.15733 8.73140 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.002968 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.882447 B = 9433.037812 C = 9825.865605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.111 3.889 6 N -0.455 5.455 7 C -0.044 4.044 8 C -0.066 4.066 9 N -0.542 5.542 10 C 0.165 3.835 11 C 0.529 3.471 12 O -0.563 6.563 13 C -0.125 4.125 14 S -0.155 6.155 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.998 3.002 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.262 1.262 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.209 0.791 33 H 0.180 0.820 34 H 0.213 0.787 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 23.094 0.133 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C -0.004 4.004 4 C -0.180 4.180 5 C -0.011 4.011 6 N -0.137 5.137 7 C -0.178 4.178 8 C -0.213 4.213 9 N -0.261 5.261 10 C -0.118 4.118 11 C 0.316 3.684 12 O -0.441 6.441 13 C -0.276 4.276 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.187 1.187 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.226 0.774 33 H 0.198 0.802 34 H 0.230 0.770 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.949 22.896 0.613 23.936 hybrid contribution -2.002 -1.226 -0.377 2.378 sum -8.952 21.671 0.236 23.448 Atomic orbital electron populations 1.22107 0.76845 1.04689 1.03508 1.47853 1.08562 1.04771 1.73382 1.21496 0.98427 0.84668 0.95798 1.22206 1.01179 0.96307 0.98260 1.22006 1.03511 0.96932 0.78691 1.45782 1.16881 1.37449 1.13619 1.23270 1.00081 1.01566 0.92838 1.22740 0.93708 1.05491 0.99358 1.70240 1.20973 1.14115 1.20748 1.25334 0.94611 1.03925 0.87910 1.20135 0.87305 0.85633 0.75314 1.90677 1.15584 1.87511 1.50350 1.23387 1.02745 0.95276 1.06224 1.85568 1.12745 0.97413 1.97036 1.23157 0.94602 0.92650 1.59030 0.89914 1.26141 0.97607 1.01723 0.93696 1.70177 1.14152 1.22555 1.47906 0.85004 0.77605 0.75856 0.79542 1.18504 1.20429 1.18680 0.90770 0.91304 0.87841 0.85710 0.91186 0.94524 0.90228 0.85114 0.87820 0.77394 0.80236 0.77024 0.87745 0.87457 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.24 127.77 1.31 2.31 16 2 N -0.61 -13.98 2.87 -846.75 -2.43 -16.41 16 3 C 0.12 1.92 5.41 86.38 0.47 2.38 16 4 C -0.14 -2.19 5.86 30.59 0.18 -2.01 16 5 C 0.11 1.17 6.15 86.38 0.53 1.70 16 6 N -0.46 -7.64 2.75 -529.07 -1.46 -9.09 16 7 C -0.04 -0.68 11.58 83.08 0.96 0.28 16 8 C -0.07 -1.39 11.87 83.52 0.99 -0.40 16 9 N -0.54 -14.61 11.25 -200.31 -2.25 -16.86 16 10 C 0.16 3.69 12.56 180.27 2.26 5.95 16 11 C 0.53 18.91 7.69 87.66 0.67 19.59 16 12 O -0.56 -25.21 15.44 -3.04 -0.05 -25.26 16 13 C -0.13 -4.91 4.71 71.24 0.34 -4.57 16 14 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 15 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 16 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 17 C 0.01 0.74 5.49 84.86 0.47 1.21 16 18 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 19 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 1.12 6.44 -2.39 -0.02 1.11 16 25 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 26 H 0.12 0.89 8.07 -2.39 -0.02 0.87 16 27 H 0.07 1.44 7.42 -2.39 -0.02 1.42 16 28 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.10 3.74 7.40 -2.40 -0.02 3.72 16 36 H 0.11 3.79 8.11 -2.40 -0.02 3.77 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -84.53 334.56 4.84 -79.69 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.05 Total: 12.12 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 8.83 Total: -4.01 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -5.86 Total: -98.14 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -84.53 4.84 -79.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161682380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.884 kcal (2) G-P(sol) polarization free energy of solvation -84.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds