Wall clock time and date at job start Tue Mar 31 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34952 * 126.03652 * 2 1 4 4 C 1.35317 * 107.74679 * 180.14565 * 3 2 1 5 5 C 1.50698 * 126.03694 * 179.87279 * 4 3 2 6 6 C 1.53006 * 109.47184 * 269.71430 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99695 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00208 * 180.02562 * 9 8 7 12 12 S 1.81002 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99878 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47396 * 59.99463 * 17 15 13 19 19 H 1.48492 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46802 * 299.99566 * 17 15 13 21 21 C 1.39867 * 107.91922 * 359.61375 * 4 3 2 22 22 N 1.30844 * 108.20399 * 0.23912 * 21 4 3 23 23 H 1.09000 * 109.47355 * 270.25675 * 1 2 3 24 24 H 1.09002 * 109.47645 * 30.26074 * 1 2 3 25 25 H 1.09004 * 109.46957 * 150.26479 * 1 2 3 26 26 H 1.08002 * 126.12753 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46665 * 149.71819 * 5 4 3 28 28 H 1.08993 * 109.47304 * 29.71375 * 5 4 3 29 29 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 30 30 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 31 31 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 32 32 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 33 33 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 34 34 H 1.08996 * 109.47197 * 299.99674 * 11 9 8 35 35 H 1.09001 * 109.47328 * 60.00147 * 11 9 8 36 36 H 0.96997 * 119.99523 * 179.97438 * 16 15 13 37 37 H 1.08000 * 125.89723 * 180.26368 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 5.1824 1.8362 -1.4510 7 6 6.4257 2.7279 -1.4550 8 7 6.8229 3.0057 -2.8374 9 6 7.9001 3.7763 -3.0872 10 8 8.5407 4.2394 -2.1674 11 6 8.3084 4.0626 -4.5093 12 16 9.7793 5.1174 -4.5139 13 6 10.0285 5.2872 -6.2499 14 1 9.3566 4.8013 -6.9420 15 6 11.0889 6.0445 -6.7280 16 7 11.9081 6.6363 -5.8845 17 14 11.3527 6.2251 -8.5685 18 1 10.1562 6.8566 -9.1805 19 1 12.5439 7.0763 -8.8166 20 1 11.5683 4.8852 -9.1714 21 6 3.5347 -0.7320 0.0036 22 7 2.2891 -1.1327 0.0056 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8876 -0.5179 25 1 -0.3633 -0.8924 -0.5097 26 1 1.9281 2.1194 0.0004 27 1 5.5819 1.0367 0.5091 28 1 4.5440 2.4826 0.5022 29 1 5.4063 0.8989 -1.9605 30 1 4.3683 2.3449 -1.9674 31 1 6.2022 3.6651 -0.9454 32 1 7.2396 2.2187 -0.9388 33 1 6.3108 2.6350 -3.5731 34 1 8.5314 3.1253 -5.0189 35 1 7.4947 4.5722 -5.0254 36 1 12.6493 7.1652 -6.2187 37 1 4.4054 -1.3709 0.0072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171172721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:46 Heat of formation + Delta-G solvation = 26.805665 kcal Electronic energy + Delta-G solvation = -18285.003250 eV Core-core repulsion = 15189.992287 eV Total energy + Delta-G solvation = -3095.010963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50584 -39.10260 -35.96082 -33.97082 -32.73556 -32.40648 -30.41044 -29.01052 -27.34134 -25.51109 -24.88381 -21.94743 -21.42839 -20.62155 -20.02933 -17.79104 -17.16689 -16.19713 -15.83762 -15.75401 -15.72531 -14.80198 -14.78420 -14.52935 -13.99705 -13.72323 -13.45585 -13.27362 -13.08100 -12.80681 -12.61930 -12.48927 -12.18362 -11.78117 -11.51477 -11.05690 -11.02408 -11.01607 -10.75758 -10.71046 -9.80245 -9.75338 -9.36791 -9.04286 -8.81223 -8.66403 -8.21184 -6.47476 -6.19447 -3.89836 1.55422 2.18506 2.47409 3.09465 3.15805 3.24956 3.29207 3.34311 3.78976 4.14473 4.22665 4.48627 4.68803 4.69797 4.75770 4.88410 4.95447 5.12000 5.15420 5.18751 5.24932 5.34053 5.52758 5.55695 5.66065 5.76793 5.82795 5.92949 6.09904 6.10950 6.17528 6.34150 6.65704 6.70211 7.36721 7.61295 7.77670 8.37133 8.67523 9.25606 10.87917 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.044331 B = 0.002186 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.467526 B =12803.188140 C =13141.085464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.055 3.945 4 C -0.232 4.232 5 C -0.037 4.037 6 C -0.124 4.124 7 C 0.119 3.881 8 N -0.740 5.740 9 C 0.530 3.470 10 O -0.519 6.519 11 C -0.154 4.154 12 S -0.061 6.061 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.053 3.947 22 N -0.301 5.301 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.173 0.827 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.572 -12.614 10.800 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.162 5.162 3 C -0.091 4.091 4 C -0.244 4.244 5 C -0.076 4.076 6 C -0.162 4.162 7 C -0.005 4.005 8 N -0.394 5.394 9 C 0.316 3.684 10 O -0.393 6.393 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.133 4.133 22 N -0.122 5.122 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.190 0.810 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.305 -12.726 12.381 28.509 hybrid contribution -0.404 0.107 -2.631 2.664 sum -22.709 -12.619 9.750 27.749 Atomic orbital electron populations 1.21848 0.74284 1.04517 1.03323 1.48462 1.06623 1.03917 1.57176 1.22374 0.90944 0.93369 1.02411 1.20097 0.94498 0.93991 1.15807 1.19776 0.93743 0.98075 0.96028 1.21796 0.96991 0.99904 0.97500 1.21307 0.96319 0.99226 0.83618 1.46017 1.31207 1.53902 1.08303 1.20299 0.79429 0.77380 0.91254 1.90699 1.52443 1.49915 1.46280 1.23533 1.06136 1.05556 0.95205 1.85388 1.27318 1.61019 1.09684 1.22834 1.16742 1.37272 0.91563 0.90993 1.24997 0.94890 0.94727 0.99004 1.70011 1.15249 1.30567 1.34467 0.86223 0.77816 0.78293 0.83156 1.19958 1.20825 1.19951 1.23853 0.95156 0.94709 0.99612 1.77361 1.01824 1.08351 1.24661 0.90814 0.89452 0.89333 0.80984 0.90680 0.91040 0.91272 0.91518 0.91717 0.91628 0.76903 0.89255 0.89285 0.92147 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.47 59.84 0.69 1.10 16 2 N -0.38 -3.11 4.01 -68.16 -0.27 -3.39 16 3 C 0.05 0.41 11.40 -17.22 -0.20 0.21 16 4 C -0.23 -1.91 5.35 -105.05 -0.56 -2.47 16 5 C -0.04 -0.27 5.70 -27.88 -0.16 -0.43 16 6 C -0.12 -0.99 5.31 -26.73 -0.14 -1.13 16 7 C 0.12 1.35 5.67 -4.05 -0.02 1.33 16 8 N -0.74 -9.94 5.56 -60.30 -0.33 -10.27 16 9 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 10 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 11 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 13 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 17 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C 0.05 0.48 11.96 -17.36 -0.21 0.27 16 22 N -0.30 -3.17 12.58 30.63 0.39 -2.78 16 23 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -37.12 338.81 -7.19 -44.30 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.39 Total: -0.96 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.27 Total: -7.15 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.51 Total: -42.01 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.12 -7.19 -44.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171172721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.109 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds