Wall clock time and date at job start Tue Mar 31 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34952 * 126.03652 * 2 1 4 4 C 1.35317 * 107.74679 * 180.14565 * 3 2 1 5 5 C 1.50698 * 126.03694 * 179.87279 * 4 3 2 6 6 C 1.53006 * 109.47184 * 269.71430 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99695 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00208 * 180.02562 * 9 8 7 12 12 S 1.81002 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.76198 * 99.99878 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47396 * 59.99463 * 17 15 13 19 19 H 1.48492 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46802 * 299.99566 * 17 15 13 21 21 C 1.39867 * 107.91922 * 359.61375 * 4 3 2 22 22 N 1.30844 * 108.20399 * 0.23912 * 21 4 3 23 23 H 1.09000 * 109.47355 * 270.25675 * 1 2 3 24 24 H 1.09002 * 109.47645 * 30.26074 * 1 2 3 25 25 H 1.09004 * 109.46957 * 150.26479 * 1 2 3 26 26 H 1.08002 * 126.12753 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46665 * 149.71819 * 5 4 3 28 28 H 1.08993 * 109.47304 * 29.71375 * 5 4 3 29 29 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 30 30 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 31 31 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 32 32 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 33 33 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 34 34 H 1.08996 * 109.47197 * 299.99674 * 11 9 8 35 35 H 1.09001 * 109.47328 * 60.00147 * 11 9 8 36 36 H 0.96997 * 119.99523 * 179.97438 * 16 15 13 37 37 H 1.08000 * 125.89723 * 180.26368 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 5.1824 1.8362 -1.4510 7 6 6.4257 2.7279 -1.4550 8 7 6.8229 3.0057 -2.8374 9 6 7.9001 3.7763 -3.0872 10 8 8.5407 4.2394 -2.1674 11 6 8.3084 4.0626 -4.5093 12 16 9.7793 5.1174 -4.5139 13 6 10.0285 5.2872 -6.2499 14 1 9.3566 4.8013 -6.9420 15 6 11.0889 6.0445 -6.7280 16 7 11.9081 6.6363 -5.8845 17 14 11.3527 6.2251 -8.5685 18 1 10.1562 6.8566 -9.1805 19 1 12.5439 7.0763 -8.8166 20 1 11.5683 4.8852 -9.1714 21 6 3.5347 -0.7320 0.0036 22 7 2.2891 -1.1327 0.0056 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8876 -0.5179 25 1 -0.3633 -0.8924 -0.5097 26 1 1.9281 2.1194 0.0004 27 1 5.5819 1.0367 0.5091 28 1 4.5440 2.4826 0.5022 29 1 5.4063 0.8989 -1.9605 30 1 4.3683 2.3449 -1.9674 31 1 6.2022 3.6651 -0.9454 32 1 7.2396 2.2187 -0.9388 33 1 6.3108 2.6350 -3.5731 34 1 8.5314 3.1253 -5.0189 35 1 7.4947 4.5722 -5.0254 36 1 12.6493 7.1652 -6.2187 37 1 4.4054 -1.3709 0.0072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171172721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:45 Heat of formation + Delta-G solvation = 0.466914 kcal Electronic energy + Delta-G solvation = -18286.145384 eV Core-core repulsion = 15189.992287 eV Total energy + Delta-G solvation = -3096.153097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07431 -40.54507 -36.91973 -34.80554 -34.56742 -33.48169 -31.49657 -30.08989 -28.02092 -27.60411 -25.68589 -22.73235 -21.98350 -21.79805 -20.86645 -19.78692 -17.77013 -17.69060 -17.04571 -16.86299 -16.81307 -16.27452 -15.79141 -15.75491 -15.25759 -14.75869 -14.48918 -14.23540 -14.04283 -13.76575 -13.59577 -13.25956 -13.15499 -13.01483 -12.86846 -12.82934 -12.59059 -12.26475 -11.76747 -11.70721 -11.33223 -11.11601 -10.93081 -10.34192 -10.26314 -10.05080 -9.24513 -8.65243 -8.33080 -6.11247 0.99452 1.28762 1.45072 1.48386 1.58290 1.65424 1.74376 1.86433 2.28540 2.39142 3.00717 3.34568 3.68929 3.97530 4.02615 4.09519 4.17866 4.32767 4.37032 4.44398 4.47875 4.53574 4.57630 4.70483 4.72766 4.85311 4.95712 5.05615 5.07088 5.39927 5.42926 5.47649 5.53087 5.76818 6.19554 6.21037 6.56343 6.77728 7.07880 7.29520 8.75867 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.044331 B = 0.002186 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.467526 B =12803.188140 C =13141.085464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.385 5.385 3 C 0.058 3.942 4 C -0.247 4.247 5 C -0.031 4.031 6 C -0.108 4.108 7 C 0.118 3.882 8 N -0.714 5.714 9 C 0.531 3.469 10 O -0.568 6.568 11 C -0.130 4.130 12 S -0.153 6.153 13 C -0.547 4.547 14 H 0.083 0.917 15 C 0.012 3.988 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.262 1.262 21 C 0.041 3.959 22 N -0.343 5.343 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.203 0.797 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.416 0.584 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.654 -13.116 9.529 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.089 4.089 4 C -0.258 4.258 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.005 4.005 8 N -0.368 5.368 9 C 0.317 3.683 10 O -0.447 6.447 11 C -0.281 4.281 12 S 0.074 5.926 13 C -0.695 4.695 14 H 0.101 0.899 15 C -0.193 4.193 16 N -0.547 5.547 17 Si 0.821 3.179 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.144 4.144 22 N -0.165 5.165 23 H 0.102 0.898 24 H 0.132 0.868 25 H 0.105 0.895 26 H 0.220 0.780 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -24.454 -13.277 11.106 29.961 hybrid contribution 0.101 0.197 -2.145 2.156 sum -24.353 -13.080 8.961 29.060 Atomic orbital electron populations 1.22151 0.72380 1.05763 1.04428 1.48807 1.07856 1.03563 1.56496 1.22901 0.90713 0.94434 1.00842 1.20217 0.95167 0.93660 1.16767 1.19709 0.93534 0.98326 0.95424 1.21677 0.95369 0.99208 0.98336 1.21473 0.97537 0.99640 0.81882 1.45801 1.29185 1.51610 1.10158 1.20070 0.80388 0.77882 0.89971 1.90688 1.54468 1.52307 1.47201 1.23382 1.02922 1.04795 0.97030 1.85573 1.32404 1.63791 1.10821 1.23179 1.17235 1.37495 0.91586 0.89895 1.26148 0.94373 0.94064 1.04679 1.70181 1.15977 1.31494 1.37088 0.84995 0.78081 0.78760 0.76098 1.18619 1.20415 1.18688 1.24179 0.95289 0.95610 0.99352 1.77294 1.02721 1.10116 1.26345 0.89785 0.86832 0.89498 0.78043 0.90664 0.90249 0.90916 0.90491 0.92213 0.92484 0.74765 0.87276 0.87192 0.92001 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.47 127.77 1.47 2.05 16 2 N -0.38 -5.68 4.01 -369.56 -1.48 -7.17 16 3 C 0.06 0.72 11.40 83.54 0.95 1.67 16 4 C -0.25 -3.59 5.35 -20.14 -0.11 -3.70 16 5 C -0.03 -0.38 5.70 29.85 0.17 -0.21 16 6 C -0.11 -1.45 5.31 30.60 0.16 -1.28 16 7 C 0.12 2.46 5.67 86.38 0.49 2.95 16 8 N -0.71 -17.64 5.56 -463.07 -2.57 -20.22 16 9 C 0.53 19.64 7.85 87.66 0.69 20.33 16 10 O -0.57 -26.55 15.86 -3.04 -0.05 -26.59 16 11 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 12 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 13 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 14 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 15 C 0.01 0.69 5.49 84.86 0.47 1.16 16 16 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 17 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 21 C 0.04 0.71 11.96 85.23 1.02 1.73 16 22 N -0.34 -6.99 12.58 -57.02 -0.72 -7.71 16 23 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 7.39 8.47 -92.71 -0.79 6.61 16 34 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 35 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -82.57 338.81 3.00 -79.57 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.28 Total: 12.86 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.39 Total: -10.75 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -4.49 Total: -91.00 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -82.57 3.00 -79.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171172721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.035 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds