Wall clock time and date at job start Tue Mar 31 2020 02:41:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46997 * 2 1
4 4 H 1.09005 * 109.46847 * 305.00103 * 3 2 1
5 5 C 1.50699 * 109.46793 * 185.00289 * 3 2 1
6 6 H 1.08003 * 119.99557 * 239.99316 * 5 3 2
7 7 C 1.37875 * 120.00649 * 60.00026 * 5 3 2
8 8 N 1.31515 * 119.99514 * 359.97438 * 7 5 3
9 9 Si 1.86796 * 120.00371 * 179.97438 * 7 5 3
10 10 H 1.48493 * 109.47153 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46996 * 119.99894 * 9 7 5
12 12 H 1.48494 * 109.47223 * 239.99331 * 9 7 5
13 13 N 1.46498 * 109.47489 * 65.00045 * 3 2 1
14 14 C 1.34776 * 119.99836 * 275.00236 * 13 3 2
15 15 O 1.21276 * 120.00328 * 359.97438 * 14 13 3
16 16 C 1.50700 * 119.99874 * 179.97438 * 14 13 3
17 17 N 1.46503 * 109.47138 * 179.97438 * 16 14 13
18 18 C 1.46416 * 119.52856 * 90.00419 * 17 16 14
19 19 C 1.53038 * 109.51683 * 144.12555 * 18 17 16
20 20 C 1.50808 * 109.18913 * 46.69249 * 19 18 17
21 21 O 1.21234 * 120.02230 * 145.74439 * 20 19 18
22 22 N 1.34559 * 119.96128 * 325.76778 * 20 19 18
23 23 C 1.34285 * 119.53909 * 269.98208 * 17 16 14
24 24 O 1.21533 * 119.21052 * 5.73351 * 23 17 16
25 25 H 1.08998 * 109.47228 * 180.02562 * 1 2 3
26 26 H 1.09003 * 109.46915 * 300.00474 * 1 2 3
27 27 H 1.08995 * 109.47105 * 59.99849 * 1 2 3
28 28 H 1.08997 * 109.47212 * 240.00159 * 2 1 3
29 29 H 1.09000 * 109.47419 * 119.99287 * 2 1 3
30 30 H 0.96998 * 120.00337 * 180.02562 * 8 7 5
31 31 H 0.96995 * 120.00047 * 95.00094 * 13 3 2
32 32 H 1.09007 * 109.46910 * 60.00386 * 16 14 13
33 33 H 1.08999 * 109.47513 * 300.00113 * 16 14 13
34 34 H 1.09000 * 109.46078 * 264.13440 * 18 17 16
35 35 H 1.08998 * 109.46746 * 24.11043 * 18 17 16
36 36 H 1.09004 * 109.52230 * 166.60480 * 19 18 17
37 37 H 1.09005 * 109.51854 * 286.78274 * 19 18 17
38 38 H 0.97004 * 119.50755 * 184.45665 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8419
5 6 3.5419 1.4443 -0.1239
6 1 4.1472 1.8890 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3367 -2.1729
9 14 6.0049 0.8813 -1.3819
10 1 6.5987 1.5462 -0.1943
11 1 6.4970 -0.5175 -1.4630
12 1 6.3990 1.6166 -2.6103
13 7 1.6525 2.0976 1.2518
14 6 0.4351 2.6644 1.3669
15 8 -0.3393 2.6327 0.4341
16 6 0.0363 3.3378 2.6548
17 7 -1.3222 3.8710 2.5267
18 6 -2.4645 3.0316 2.8933
19 6 -3.5526 3.8989 3.5304
20 6 -3.7612 5.1316 2.6870
21 8 -4.8676 5.6163 2.5845
22 7 -2.7185 5.6928 2.0479
23 6 -1.5023 5.1228 2.0751
24 8 -0.5420 5.7551 1.6812
25 1 -0.3633 -1.0276 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 1.8933 -0.5138 -0.8900
29 1 1.8934 -0.5137 0.8900
30 1 3.8292 -0.0618 -2.9495
31 1 2.2719 2.1233 1.9977
32 1 0.7277 4.1532 2.8677
33 1 0.0673 2.6132 3.4684
34 1 -2.8615 2.5485 2.0005
35 1 -2.1429 2.2713 3.6051
36 1 -4.4831 3.3337 3.5855
37 1 -3.2436 4.1922 4.5338
38 1 -2.8468 6.5216 1.5604
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273829069.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:41:43
Heat of formation + Delta-G solvation = -96.882569 kcal
Electronic energy + Delta-G solvation = -22910.363019 eV
Core-core repulsion = 19367.235661 eV
Total energy + Delta-G solvation = -3543.127359 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.73550 -39.39801 -38.59250 -36.32098 -35.15050 -34.54509 -32.43647 -31.73514
-30.91253 -28.04185 -26.49373 -25.21819 -23.35343 -22.85146 -20.71721 -19.42867
-19.11889 -18.42797 -17.85157 -17.37175 -16.54119 -16.03233 -15.51265 -15.09729
-15.01914 -14.76475 -14.58072 -14.46286 -14.04357 -13.52307 -13.05897 -12.86294
-12.67925 -12.45178 -12.09882 -11.67132 -11.32882 -11.28710 -10.97927 -10.85195
-10.79162 -10.40159 -10.34153 -10.31670 -10.21439 -9.70441 -9.59656 -9.05776
-8.65044 -8.50057 -7.85212 -6.13467 -4.22728 1.58313 2.20156 2.88886
3.11990 3.23183 3.31083 3.32698 3.34752 4.03328 4.17575 4.29209
4.38595 4.64019 4.78945 5.07155 5.15312 5.18488 5.38031 5.44360
5.52656 5.84471 5.99953 6.33402 6.33764 6.38919 6.60381 6.97457
7.15686 7.23647 7.32644 7.36402 7.42254 7.59678 7.70568 7.88749
8.07786 8.16174 8.63204 8.76627 9.09853 9.44707 10.91926
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.033405 B = 0.003911 C = 0.003723
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.000584 B = 7158.090667 C = 7518.921531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.127 4.127
3 C 0.271 3.729
4 H 0.048 0.952
5 C -0.533 4.533
6 H 0.062 0.938
7 C 0.066 3.934
8 N -0.882 5.882
9 Si 0.901 3.099
10 H -0.273 1.273
11 H -0.283 1.283
12 H -0.283 1.283
13 N -0.706 5.706
14 C 0.485 3.515
15 O -0.539 6.539
16 C 0.106 3.894
17 N -0.596 5.596
18 C 0.110 3.890
19 C -0.157 4.157
20 C 0.525 3.475
21 O -0.510 6.510
22 N -0.674 5.674
23 C 0.713 3.287
24 O -0.548 6.548
25 H 0.022 0.978
26 H 0.036 0.964
27 H 0.048 0.952
28 H 0.099 0.901
29 H 0.031 0.969
30 H 0.264 0.736
31 H 0.388 0.612
32 H 0.113 0.887
33 H 0.108 0.892
34 H 0.083 0.917
35 H 0.103 0.897
36 H 0.126 0.874
37 H 0.113 0.887
38 H 0.425 0.575
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.091 3.209 14.237 17.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.166 4.166
3 C 0.169 3.831
4 H 0.066 0.934
5 C -0.572 4.572
6 H 0.080 0.920
7 C -0.137 4.137
8 N -0.520 5.520
9 Si 0.728 3.272
10 H -0.197 1.197
11 H -0.209 1.209
12 H -0.209 1.209
13 N -0.355 5.355
14 C 0.268 3.732
15 O -0.417 6.417
16 C -0.021 4.021
17 N -0.332 5.332
18 C -0.013 4.013
19 C -0.197 4.197
20 C 0.313 3.687
21 O -0.383 6.383
22 N -0.343 5.343
23 C 0.414 3.586
24 O -0.421 6.421
25 H 0.041 0.959
26 H 0.055 0.945
27 H 0.067 0.933
28 H 0.117 0.883
29 H 0.050 0.950
30 H 0.074 0.926
31 H 0.220 0.780
32 H 0.131 0.869
33 H 0.126 0.874
34 H 0.101 0.899
35 H 0.121 0.879
36 H 0.144 0.856
37 H 0.132 0.868
38 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges -10.660 3.495 13.201 17.324
hybrid contribution 1.235 0.232 -0.060 1.258
sum -9.425 3.727 13.141 16.595
Atomic orbital electron populations
1.21819 0.98441 0.97892 1.01061 1.21932 0.92516 0.99843 1.02302
1.18779 0.94239 0.89055 0.81002 0.93400 1.21273 0.90719 1.38855
1.06330 0.91989 1.24887 0.98622 0.94823 0.95372 1.69900 1.35050
1.37687 1.09362 0.86402 0.84866 0.77718 0.78170 1.19716 1.20908
1.20896 1.46451 1.14414 1.55976 1.18644 1.20699 0.83277 0.79690
0.89579 1.90676 1.51590 1.59298 1.40136 1.21464 0.82685 1.00315
0.97587 1.46486 1.07485 1.11606 1.67620 1.21670 0.85186 0.93084
1.01373 1.22273 1.02661 0.94471 1.00297 1.20973 0.83596 0.85310
0.78820 1.90782 1.23372 1.63372 1.60727 1.44255 1.09582 1.28327
1.52135 1.15509 0.82780 0.81950 0.78351 1.91027 1.38256 1.62611
1.50229 0.95918 0.94460 0.93258 0.88312 0.95012 0.92632 0.77953
0.86929 0.87377 0.89915 0.87922 0.85624 0.86848 0.73360
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.84 8.52 37.16 0.32 -2.52 16
2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16
3 C 0.27 6.61 2.24 -69.08 -0.15 6.46 16
4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16
5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16
6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16
7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16
8 N -0.88 -24.50 11.29 55.43 0.63 -23.87 16
9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16
10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
13 N -0.71 -13.61 5.02 -54.93 -0.28 -13.89 16
14 C 0.48 8.77 6.46 -10.99 -0.07 8.70 16
15 O -0.54 -11.89 13.57 5.56 0.08 -11.82 16
16 C 0.11 1.31 5.82 -5.19 -0.03 1.28 16
17 N -0.60 -7.19 2.28 -181.15 -0.41 -7.60 16
18 C 0.11 0.90 6.64 -4.07 -0.03 0.88 16
19 C -0.16 -1.04 6.28 -27.81 -0.17 -1.21 16
20 C 0.53 5.62 7.76 -11.03 -0.09 5.54 16
21 O -0.51 -6.92 17.93 5.60 0.10 -6.82 16
22 N -0.67 -7.97 5.18 -16.02 -0.08 -8.05 16
23 C 0.71 10.18 8.21 -87.74 -0.72 9.46 16
24 O -0.55 -9.98 16.66 5.34 0.09 -9.90 16
25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
26 H 0.04 0.73 5.65 -51.93 -0.29 0.44 16
27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16
28 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16
29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16
31 H 0.39 6.30 8.54 -40.82 -0.35 5.96 16
32 H 0.11 1.37 7.43 -51.93 -0.39 0.99 16
33 H 0.11 0.86 7.82 -51.93 -0.41 0.45 16
34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
35 H 0.10 0.54 7.79 -51.93 -0.40 0.14 16
36 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16
37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.43 4.66 8.86 -40.82 -0.36 4.30 16
LS Contribution 318.42 15.07 4.80 4.80
Total: -1.00 -34.87 318.42 -6.56 -41.43
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -4.96 Total: 7.28 kcal
Atomic # 6 Polarization: 14.51 SS G_CDS: -1.49 Total: 13.02 kcal
Atomic # 7 Polarization: -53.26 SS G_CDS: -0.15 Total: -53.41 kcal
Atomic # 8 Polarization: -28.79 SS G_CDS: 0.26 Total: -28.53 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -34.87 -6.56 -41.43 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273829069.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.451 kcal
(2) G-P(sol) polarization free energy of solvation -34.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds