Wall clock time and date at job start Tue Mar 31 2020 02:41:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46997 * 2 1
4 4 H 1.09005 * 109.46847 * 305.00103 * 3 2 1
5 5 C 1.50699 * 109.46793 * 185.00289 * 3 2 1
6 6 H 1.08003 * 119.99557 * 239.99316 * 5 3 2
7 7 C 1.37875 * 120.00649 * 60.00026 * 5 3 2
8 8 N 1.31515 * 119.99514 * 359.97438 * 7 5 3
9 9 Si 1.86796 * 120.00371 * 179.97438 * 7 5 3
10 10 H 1.48493 * 109.47153 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46996 * 119.99894 * 9 7 5
12 12 H 1.48494 * 109.47223 * 239.99331 * 9 7 5
13 13 N 1.46498 * 109.47489 * 65.00045 * 3 2 1
14 14 C 1.34776 * 119.99836 * 275.00236 * 13 3 2
15 15 O 1.21276 * 120.00328 * 359.97438 * 14 13 3
16 16 C 1.50700 * 119.99874 * 179.97438 * 14 13 3
17 17 N 1.46503 * 109.47138 * 179.97438 * 16 14 13
18 18 C 1.46416 * 119.52856 * 90.00419 * 17 16 14
19 19 C 1.53038 * 109.51683 * 144.12555 * 18 17 16
20 20 C 1.50808 * 109.18913 * 46.69249 * 19 18 17
21 21 O 1.21234 * 120.02230 * 145.74439 * 20 19 18
22 22 N 1.34559 * 119.96128 * 325.76778 * 20 19 18
23 23 C 1.34285 * 119.53909 * 269.98208 * 17 16 14
24 24 O 1.21533 * 119.21052 * 5.73351 * 23 17 16
25 25 H 1.08998 * 109.47228 * 180.02562 * 1 2 3
26 26 H 1.09003 * 109.46915 * 300.00474 * 1 2 3
27 27 H 1.08995 * 109.47105 * 59.99849 * 1 2 3
28 28 H 1.08997 * 109.47212 * 240.00159 * 2 1 3
29 29 H 1.09000 * 109.47419 * 119.99287 * 2 1 3
30 30 H 0.96998 * 120.00337 * 180.02562 * 8 7 5
31 31 H 0.96995 * 120.00047 * 95.00094 * 13 3 2
32 32 H 1.09007 * 109.46910 * 60.00386 * 16 14 13
33 33 H 1.08999 * 109.47513 * 300.00113 * 16 14 13
34 34 H 1.09000 * 109.46078 * 264.13440 * 18 17 16
35 35 H 1.08998 * 109.46746 * 24.11043 * 18 17 16
36 36 H 1.09004 * 109.52230 * 166.60480 * 19 18 17
37 37 H 1.09005 * 109.51854 * 286.78274 * 19 18 17
38 38 H 0.97004 * 119.50755 * 184.45665 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8419
5 6 3.5419 1.4443 -0.1239
6 1 4.1472 1.8890 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3367 -2.1729
9 14 6.0049 0.8813 -1.3819
10 1 6.5987 1.5462 -0.1943
11 1 6.4970 -0.5175 -1.4630
12 1 6.3990 1.6166 -2.6103
13 7 1.6525 2.0976 1.2518
14 6 0.4351 2.6644 1.3669
15 8 -0.3393 2.6327 0.4341
16 6 0.0363 3.3378 2.6548
17 7 -1.3222 3.8710 2.5267
18 6 -2.4645 3.0316 2.8933
19 6 -3.5526 3.8989 3.5304
20 6 -3.7612 5.1316 2.6870
21 8 -4.8676 5.6163 2.5845
22 7 -2.7185 5.6928 2.0479
23 6 -1.5023 5.1228 2.0751
24 8 -0.5420 5.7551 1.6812
25 1 -0.3633 -1.0276 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 1.8933 -0.5138 -0.8900
29 1 1.8934 -0.5137 0.8900
30 1 3.8292 -0.0618 -2.9495
31 1 2.2719 2.1233 1.9977
32 1 0.7277 4.1532 2.8677
33 1 0.0673 2.6132 3.4684
34 1 -2.8615 2.5485 2.0005
35 1 -2.1429 2.2713 3.6051
36 1 -4.4831 3.3337 3.5855
37 1 -3.2436 4.1922 4.5338
38 1 -2.8468 6.5216 1.5604
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273829069.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:41:43
Heat of formation + Delta-G solvation = -124.740313 kcal
Electronic energy + Delta-G solvation = -22911.571022 eV
Core-core repulsion = 19367.235661 eV
Total energy + Delta-G solvation = -3544.335361 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-42.69583 -40.68390 -39.83604 -37.41552 -36.74725 -35.65140 -34.26739 -32.97593
-32.25078 -29.49305 -28.05635 -25.97379 -25.00412 -24.06948 -22.23324 -21.11978
-20.12854 -19.38966 -18.97147 -18.65961 -17.81377 -17.38605 -17.06412 -16.45808
-16.33010 -16.01630 -15.68875 -15.45470 -15.43768 -14.62543 -14.54996 -14.23678
-13.98487 -13.55921 -13.40017 -13.15477 -12.90808 -12.83162 -12.69134 -12.45980
-12.12262 -12.01604 -11.84353 -11.54264 -11.37139 -11.36267 -11.02128 -10.92248
-10.52693 -9.81854 -9.55825 -8.14597 -6.31486 0.67259 1.25119 1.44099
1.46191 1.57302 1.90853 2.00168 2.21650 2.39742 2.79204 3.15287
3.42709 3.66971 4.02316 4.06074 4.22350 4.44171 4.49963 4.54099
4.62845 4.63071 4.81204 4.89152 4.96588 5.09440 5.13155 5.31008
5.46499 5.48761 5.60584 5.68012 5.84927 5.98464 6.21910 6.31741
6.44816 6.78519 7.00654 7.10582 7.36701 7.67533 8.90592
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.033405 B = 0.003911 C = 0.003723
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.000584 B = 7158.090667 C = 7518.921531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.119 4.119
3 C 0.279 3.721
4 H -0.012 1.012
5 C -0.546 4.546
6 H 0.073 0.927
7 C 0.014 3.986
8 N -0.916 5.916
9 Si 0.968 3.032
10 H -0.259 1.259
11 H -0.278 1.278
12 H -0.288 1.288
13 N -0.704 5.704
14 C 0.478 3.522
15 O -0.585 6.585
16 C 0.117 3.883
17 N -0.592 5.592
18 C 0.104 3.896
19 C -0.142 4.142
20 C 0.522 3.478
21 O -0.542 6.542
22 N -0.675 5.675
23 C 0.710 3.290
24 O -0.598 6.598
25 H 0.045 0.955
26 H 0.053 0.947
27 H 0.016 0.984
28 H 0.065 0.935
29 H 0.047 0.953
30 H 0.263 0.737
31 H 0.406 0.594
32 H 0.117 0.883
33 H 0.169 0.831
34 H 0.063 0.937
35 H 0.148 0.852
36 H 0.151 0.849
37 H 0.147 0.853
38 H 0.423 0.577
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.001 2.281 17.491 20.277
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.158 4.158
3 C 0.175 3.825
4 H 0.006 0.994
5 C -0.584 4.584
6 H 0.091 0.909
7 C -0.186 4.186
8 N -0.555 5.555
9 Si 0.793 3.207
10 H -0.183 1.183
11 H -0.203 1.203
12 H -0.215 1.215
13 N -0.354 5.354
14 C 0.263 3.737
15 O -0.465 6.465
16 C -0.010 4.010
17 N -0.327 5.327
18 C -0.017 4.017
19 C -0.182 4.182
20 C 0.313 3.687
21 O -0.417 6.417
22 N -0.343 5.343
23 C 0.411 3.589
24 O -0.475 6.475
25 H 0.064 0.936
26 H 0.072 0.928
27 H 0.035 0.965
28 H 0.084 0.916
29 H 0.066 0.934
30 H 0.072 0.928
31 H 0.241 0.759
32 H 0.135 0.865
33 H 0.186 0.814
34 H 0.082 0.918
35 H 0.166 0.834
36 H 0.168 0.832
37 H 0.164 0.836
38 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges -10.593 2.552 16.523 19.792
hybrid contribution 1.140 0.556 -1.112 1.687
sum -9.453 3.108 15.411 18.345
Atomic orbital electron populations
1.21643 0.96721 0.99044 1.00261 1.21751 0.93960 0.98810 1.01325
1.18301 0.93370 0.89300 0.81523 0.99413 1.21662 0.91711 1.38434
1.06606 0.90937 1.25762 1.03155 0.94554 0.95129 1.70063 1.36907
1.38615 1.09915 0.85360 0.79419 0.77813 0.78117 1.18297 1.20330
1.21486 1.46190 1.15621 1.56111 1.17466 1.21802 0.82033 0.78618
0.91213 1.90668 1.52759 1.60707 1.42386 1.21565 0.82946 1.01149
0.95325 1.46676 1.08595 1.10987 1.66453 1.22006 0.84309 0.93570
1.01857 1.22376 1.03317 0.92020 1.00441 1.21846 0.82543 0.86042
0.78316 1.90773 1.24391 1.64657 1.61876 1.44299 1.09388 1.28402
1.52168 1.15770 0.82630 0.82651 0.77835 1.90990 1.39924 1.64104
1.52488 0.93616 0.92782 0.96487 0.91623 0.93443 0.92770 0.75882
0.86507 0.81387 0.91815 0.83424 0.83163 0.83559 0.73595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.00 8.52 71.98 0.61 -4.38 16
2 C -0.12 -5.60 5.45 30.60 0.17 -5.44 16
3 C 0.28 13.88 2.24 44.25 0.10 13.98 16
4 H -0.01 -0.74 7.58 -2.38 -0.02 -0.76 16
5 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16
6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16
7 C 0.01 0.74 5.29 84.65 0.45 1.19 16
8 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16
9 Si 0.97 41.93 29.54 68.60 2.03 43.96 16
10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16
11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16
12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16
13 N -0.70 -26.49 5.02 -446.10 -2.24 -28.73 16
14 C 0.48 16.75 6.46 87.66 0.57 17.31 16
15 O -0.58 -26.12 13.57 -3.02 -0.04 -26.16 16
16 C 0.12 2.48 5.82 85.63 0.50 2.98 16
17 N -0.59 -12.74 2.28 -845.59 -1.93 -14.67 16
18 C 0.10 1.30 6.64 86.41 0.57 1.87 16
19 C -0.14 -1.31 6.28 29.89 0.19 -1.12 16
20 C 0.52 10.36 7.76 87.73 0.68 11.04 16
21 O -0.54 -14.23 17.93 -2.89 -0.05 -14.29 16
22 N -0.68 -15.73 5.18 -441.65 -2.29 -18.01 16
23 C 0.71 19.78 8.21 179.34 1.47 21.26 16
24 O -0.60 -22.09 16.66 -3.82 -0.06 -22.16 16
25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.05 2.05 5.65 -2.39 -0.01 2.03 16
27 H 0.02 0.78 7.85 -2.39 -0.02 0.76 16
28 H 0.07 3.54 5.95 -2.39 -0.01 3.53 16
29 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16
30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16
31 H 0.41 12.30 8.54 -92.71 -0.79 11.51 16
32 H 0.12 2.52 7.43 -2.38 -0.02 2.51 16
33 H 0.17 1.62 7.82 -2.39 -0.02 1.60 16
34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.15 0.60 7.79 -2.39 -0.02 0.58 16
36 H 0.15 0.76 8.14 -2.38 -0.02 0.74 16
37 H 0.15 0.51 8.14 -2.38 -0.02 0.49 16
38 H 0.42 9.63 8.86 -92.71 -0.82 8.81 16
Total: -1.00 -81.71 318.42 0.68 -81.03
By element:
Atomic # 1 Polarization: 21.22 SS G_CDS: -0.50 Total: 20.72 kcal
Atomic # 6 Polarization: 24.98 SS G_CDS: 5.53 Total: 30.51 kcal
Atomic # 7 Polarization: -107.41 SS G_CDS: -6.21 Total: -113.62 kcal
Atomic # 8 Polarization: -62.44 SS G_CDS: -0.16 Total: -62.60 kcal
Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal
Total: -81.71 0.68 -81.03 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273829069.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.710 kcal
(2) G-P(sol) polarization free energy of solvation -81.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds