Wall clock time and date at job start Tue Mar 31 2020 01:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46984 * 2 1 4 4 C 1.38466 * 119.99864 * 180.02562 * 3 2 1 5 5 N 1.29436 * 125.18856 * 180.02562 * 4 3 2 6 6 C 1.33634 * 116.89663 * 179.97438 * 5 4 3 7 7 C 1.47165 * 122.47630 * 179.97438 * 6 5 4 8 8 O 1.21651 * 119.99484 * 179.97438 * 7 6 5 9 9 N 1.34779 * 120.00029 * 359.97438 * 7 6 5 10 10 C 1.46505 * 119.99683 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47342 * 34.99745 * 10 9 7 12 12 C 1.50700 * 109.46888 * 154.99943 * 10 9 7 13 13 H 1.07998 * 120.00206 * 359.97438 * 12 10 9 14 14 C 1.37873 * 119.99685 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00015 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00109 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46783 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47373 * 119.99498 * 16 14 12 19 19 H 1.48501 * 109.47210 * 240.00094 * 16 14 12 20 20 C 1.53005 * 109.46712 * 274.99757 * 10 9 7 21 21 C 1.53001 * 109.47032 * 65.00442 * 20 10 9 22 22 C 1.35046 * 115.04137 * 0.02562 * 6 5 4 23 23 S 1.76059 * 125.18498 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46761 * 300.00124 * 1 2 3 26 26 H 1.08997 * 109.47616 * 59.99431 * 1 2 3 27 27 H 1.08998 * 109.46461 * 240.00210 * 2 1 3 28 28 H 1.08992 * 109.47318 * 120.00238 * 2 1 3 29 29 H 0.96997 * 120.00391 * 359.97438 * 3 2 1 30 30 H 0.96996 * 119.99978 * 359.97438 * 9 7 6 31 31 H 0.97011 * 119.99598 * 180.02562 * 15 14 12 32 32 H 1.08995 * 109.46889 * 185.00071 * 20 10 9 33 33 H 1.08994 * 109.46864 * 305.00159 * 20 10 9 34 34 H 1.08999 * 109.46958 * 180.02562 * 21 20 10 35 35 H 1.09005 * 109.46835 * 299.99496 * 21 20 10 36 36 H 1.08994 * 109.47355 * 59.99356 * 21 20 10 37 37 H 1.08003 * 125.86739 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3797 1.6343 -0.0005 5 7 3.9197 2.8106 -0.0001 6 6 5.2550 2.8627 -0.0002 7 6 5.9962 4.1341 -0.0003 8 8 7.2127 4.1289 0.0000 9 7 5.3272 5.3042 -0.0009 10 6 6.0651 6.5698 -0.0015 11 1 6.9752 6.4595 -0.5909 12 6 5.2055 7.6520 -0.6025 13 1 4.2095 7.4202 -0.9496 14 6 5.6908 8.9381 -0.7091 15 7 6.9036 9.2205 -0.2860 16 14 4.6253 10.2798 -1.4534 17 1 3.3129 9.7076 -1.8481 18 1 4.4153 11.3571 -0.4531 19 1 5.3005 10.8409 -2.6510 20 6 6.4306 6.9478 1.4353 21 6 7.4034 5.9124 2.0032 22 6 5.8740 1.6625 -0.0013 23 16 4.6400 0.4049 -0.0006 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3880 2.1185 -0.0004 30 1 4.3572 5.3082 -0.0015 31 1 7.2449 10.1255 -0.3607 32 1 6.9007 7.9311 1.4440 33 1 5.5278 6.9712 2.0456 34 1 7.6634 6.1814 3.0270 35 1 6.9332 4.9290 1.9946 36 1 8.3061 5.8888 1.3929 37 1 6.9419 1.5012 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273980138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:52 Heat of formation + Delta-G solvation = -19.480175 kcal Electronic energy + Delta-G solvation = -19808.586255 eV Core-core repulsion = 16711.568187 eV Total energy + Delta-G solvation = -3097.018068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.27196 -39.68933 -37.39410 -36.85544 -34.28911 -32.85697 -32.14169 -29.71629 -29.09969 -26.22591 -24.78167 -23.86075 -23.11319 -21.51943 -20.75043 -19.73839 -18.46388 -17.72545 -17.21256 -16.86133 -16.61648 -16.24378 -16.11800 -15.96603 -15.13183 -14.87416 -14.60517 -14.14050 -13.82423 -13.48527 -13.23614 -13.21879 -13.03290 -12.88496 -12.70797 -12.64194 -12.58896 -12.15957 -12.06579 -11.61245 -11.29530 -11.07119 -10.98943 -10.69392 -10.54148 -10.19962 -9.65738 -8.78962 -8.16537 -6.33782 -0.27350 0.05281 0.54052 1.21493 1.43758 1.44338 1.56990 1.94262 2.37335 2.52528 2.71555 3.12546 3.56033 4.03864 4.19904 4.29003 4.40501 4.48709 4.48946 4.56344 4.72509 4.79636 4.93642 5.03985 5.06412 5.24421 5.28523 5.42857 5.53776 5.59997 5.64078 5.78180 5.89737 6.14977 6.27629 6.72376 6.73992 7.01994 7.30801 7.49380 8.89270 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.004229 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.907795 B = 6619.309690 C = 7660.621823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.685 5.685 4 C 0.334 3.666 5 N -0.558 5.558 6 C 0.045 3.955 7 C 0.570 3.430 8 O -0.576 6.576 9 N -0.686 5.686 10 C 0.276 3.724 11 H 0.004 0.996 12 C -0.550 4.550 13 H 0.066 0.934 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.281 1.281 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.228 4.228 23 S 0.141 5.859 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.417 0.583 30 H 0.404 0.596 31 H 0.266 0.734 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 -20.783 1.633 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.327 5.327 4 C -0.040 4.040 5 N -0.287 5.287 6 C -0.087 4.087 7 C 0.355 3.645 8 O -0.458 6.458 9 N -0.333 5.333 10 C 0.173 3.827 11 H 0.021 0.979 12 C -0.588 4.588 13 H 0.084 0.916 14 C -0.183 4.183 15 N -0.551 5.551 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.207 1.207 20 C -0.159 4.159 21 C -0.181 4.181 22 C -0.372 4.372 23 S 0.388 5.612 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.256 0.744 30 H 0.239 0.761 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.667 -21.451 1.650 24.967 hybrid contribution -0.154 2.100 -0.391 2.142 sum -12.821 -19.351 1.259 23.247 Atomic orbital electron populations 1.21935 0.91690 1.04660 1.03193 1.21806 0.97103 0.79706 1.02761 1.44267 0.99016 1.10204 1.79176 1.24477 0.92088 0.90542 0.96882 1.66549 1.09554 1.24434 1.28125 1.19808 0.88137 0.94270 1.06441 1.17639 0.86528 0.83471 0.76907 1.90748 1.14081 1.87730 1.53216 1.46175 1.10773 1.05707 1.70631 1.18493 0.91324 0.79515 0.93350 0.97856 1.21563 1.01526 0.94170 1.41571 0.91628 1.25754 0.96370 1.00714 0.95419 1.70049 1.17327 1.21042 1.46675 0.85300 0.78751 0.78361 0.77927 1.18843 1.20120 1.20700 1.21781 0.97480 1.00163 0.96460 1.21678 0.98970 0.98502 0.98944 1.26868 1.05238 0.93743 1.11344 1.84337 0.94883 1.07787 1.74193 0.88545 0.91524 0.91575 0.90672 0.90599 0.74412 0.76094 0.92455 0.90489 0.94429 0.93276 0.94303 0.95022 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.03 71.98 0.72 -0.12 16 2 C 0.11 1.02 6.31 86.38 0.55 1.56 16 3 N -0.68 -11.44 5.71 -346.94 -1.98 -13.42 16 4 C 0.33 8.20 8.42 179.44 1.51 9.71 16 5 N -0.56 -18.37 10.02 -187.41 -1.88 -20.25 16 6 C 0.04 1.65 6.67 40.48 0.27 1.92 16 7 C 0.57 26.04 6.36 86.59 0.55 26.59 16 8 O -0.58 -29.32 13.79 -4.19 -0.06 -29.38 16 9 N -0.69 -32.60 5.02 -449.59 -2.26 -34.86 16 10 C 0.28 15.14 2.24 44.25 0.10 15.23 16 11 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 12 C -0.55 -30.81 8.73 25.60 0.22 -30.59 16 13 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 14 C 0.02 0.98 5.29 84.65 0.45 1.43 16 15 N -0.91 -53.26 11.29 21.45 0.24 -53.02 16 16 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.12 -6.25 5.45 30.60 0.17 -6.08 16 21 C -0.12 -5.88 8.51 71.98 0.61 -5.27 16 22 C -0.23 -6.88 10.83 67.08 0.73 -6.15 16 23 S 0.14 2.92 22.62 -56.49 -1.28 1.65 16 24 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.42 6.56 8.60 -92.71 -0.80 5.76 16 30 H 0.40 17.93 8.01 -92.71 -0.74 17.19 16 31 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 32 H 0.08 4.39 5.95 -2.39 -0.01 4.37 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.82 5.64 -2.38 -0.01 1.80 16 36 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 37 H 0.19 5.41 8.01 -2.91 -0.02 5.38 16 Total: -1.00 -69.79 322.82 0.26 -69.53 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.44 Total: 26.08 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.88 Total: 8.24 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.87 Total: -121.55 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.28 Total: 1.65 kcal Total: -69.79 0.26 -69.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273980138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.053 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds