Wall clock time and date at job start Tue Mar 31 2020 02:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00564 * 2 1 4 4 O 1.20825 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.86765 * 304.55167 * 5 3 2 7 7 C 1.54101 * 110.00368 * 65.63863 * 5 3 2 8 8 C 1.55230 * 104.22652 * 121.53507 * 7 5 3 9 9 C 1.54995 * 101.90228 * 20.84574 * 8 7 5 10 10 H 1.09004 * 110.61764 * 81.56545 * 9 8 7 11 11 C 1.50698 * 110.61995 * 204.40619 * 9 8 7 12 12 O 1.21294 * 119.99886 * 112.82183 * 11 9 8 13 13 N 1.34774 * 120.00187 * 292.82226 * 11 9 8 14 14 C 1.37091 * 120.00252 * 179.97438 * 13 11 9 15 15 H 1.08003 * 120.00531 * 223.90477 * 14 13 11 16 16 C 1.38954 * 119.99995 * 43.90133 * 14 13 11 17 17 N 1.31410 * 119.99787 * 18.33989 * 16 14 13 18 18 Si 1.86802 * 120.00170 * 198.33356 * 16 14 13 19 19 H 1.48503 * 109.46834 * 90.00585 * 18 16 14 20 20 H 1.48501 * 109.47129 * 209.99823 * 18 16 14 21 21 H 1.48492 * 109.47328 * 330.00414 * 18 16 14 22 22 C 1.46504 * 120.00079 * 359.97438 * 13 11 9 23 23 C 1.52992 * 117.50113 * 182.98034 * 22 13 11 24 24 C 1.52999 * 117.49917 * 114.35443 * 22 13 11 25 25 O 1.43750 * 109.87519 * 183.54500 * 5 3 2 26 26 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46615 * 300.00525 * 1 2 3 28 28 H 1.09003 * 109.47106 * 59.99882 * 1 2 3 29 29 H 1.09002 * 110.48313 * 240.20049 * 7 5 3 30 30 H 1.08997 * 110.48701 * 2.71336 * 7 5 3 31 31 H 1.08995 * 110.92222 * 262.74595 * 8 7 5 32 32 H 1.09001 * 111.07635 * 139.01519 * 8 7 5 33 33 H 0.97003 * 120.00613 * 174.87662 * 17 16 14 34 34 H 1.09000 * 115.54750 * 328.69208 * 22 13 11 35 35 H 1.09006 * 117.49724 * 359.97438 * 23 22 13 36 36 H 1.08991 * 117.50093 * 145.02149 * 23 22 13 37 37 H 1.08995 * 117.49759 * 214.98232 * 24 22 13 38 38 H 1.08998 * 117.49830 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9671 0.7133 0.8434 7 6 4.1236 0.7060 -1.3200 8 6 4.9330 1.8815 -1.9304 9 6 5.2002 2.7659 -0.6859 10 1 6.0506 2.3853 -0.1201 11 6 5.4337 4.1980 -1.0927 12 8 4.6303 5.0538 -0.7875 13 7 6.5353 4.5278 -1.7958 14 6 6.7474 5.8305 -2.1663 15 1 7.0851 6.0594 -3.1664 16 6 6.5280 6.8565 -1.2553 17 7 6.4728 6.5925 0.0308 18 14 6.3116 8.6111 -1.8588 19 1 4.8729 8.8707 -2.1201 20 1 6.8048 9.5549 -0.8238 21 1 7.0847 8.8024 -3.1121 22 6 7.5060 3.4942 -2.1640 23 6 8.7697 3.9422 -2.9010 24 6 7.6750 3.1817 -3.6522 25 8 3.9840 2.6476 0.0831 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.7763 -0.1445 -1.1233 30 1 3.3095 0.4154 -1.9841 31 1 4.3402 2.4197 -2.6700 32 1 5.8683 1.5292 -2.3654 33 1 6.3942 7.3165 0.6717 34 1 7.5994 2.6655 -1.4621 35 1 8.8786 5.0060 -3.1123 36 1 9.6948 3.4084 -2.6839 37 1 7.8800 2.1477 -3.9292 38 1 7.0636 3.7449 -4.3573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291363811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:11 Heat of formation + Delta-G solvation = -110.686008 kcal Electronic energy + Delta-G solvation = -23297.719340 eV Core-core repulsion = 19721.700668 eV Total energy + Delta-G solvation = -3576.018672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64579 -39.31966 -37.87314 -36.28851 -35.89016 -32.77993 -32.06163 -31.08333 -29.98998 -27.66136 -25.43055 -23.63808 -22.05481 -21.73357 -21.04885 -20.74028 -19.36964 -17.85454 -17.07974 -16.68271 -16.10813 -16.09586 -15.79782 -15.01684 -14.51721 -14.43331 -13.78937 -13.70890 -13.55298 -13.31796 -13.13837 -12.55489 -12.37967 -12.12031 -11.61010 -11.53357 -11.33065 -11.06948 -10.92551 -10.87768 -10.83367 -10.80735 -10.55697 -10.26564 -10.14594 -9.97812 -9.76977 -9.49200 -8.68047 -7.93921 -7.03183 -6.09028 -3.85946 2.27004 2.47087 3.33172 3.40251 3.45112 3.87927 4.14746 4.34631 4.51636 4.65380 4.75534 4.83794 4.96136 5.01922 5.09119 5.15426 5.30574 5.31505 5.42264 5.46834 5.54023 5.63785 5.72154 5.78815 5.88161 5.99514 6.05142 6.17812 6.32708 6.35169 6.40772 6.69019 6.90219 7.00612 7.63627 7.85348 8.28336 9.04839 9.18296 9.64798 10.28879 10.99978 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.005367 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.019997 B = 5215.444485 C = 6194.730777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.455 3.545 4 O -0.476 6.476 5 C 0.084 3.916 6 H 0.106 0.894 7 C -0.141 4.141 8 C -0.139 4.139 9 C 0.064 3.936 10 H 0.083 0.917 11 C 0.488 3.512 12 O -0.506 6.506 13 N -0.424 5.424 14 C -0.350 4.350 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.830 5.830 18 Si 0.913 3.087 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.073 3.927 23 C -0.172 4.172 24 C -0.208 4.208 25 O -0.316 6.316 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.266 0.734 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 -16.146 -2.672 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.296 3.704 4 O -0.360 6.360 5 C 0.024 3.976 6 H 0.123 0.877 7 C -0.178 4.178 8 C -0.177 4.177 9 C 0.003 3.997 10 H 0.100 0.900 11 C 0.273 3.727 12 O -0.381 6.381 13 N -0.147 5.147 14 C -0.477 4.477 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.463 5.463 18 Si 0.741 3.259 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.034 4.034 23 C -0.210 4.210 24 C -0.247 4.247 25 O -0.234 6.234 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.931 -15.100 -2.170 15.534 hybrid contribution -0.123 0.652 -0.160 0.683 sum -3.054 -14.448 -2.330 14.950 Atomic orbital electron populations 1.23245 0.76407 1.03429 1.02711 1.86461 1.23309 1.33380 1.84798 1.23715 0.91800 0.81548 0.73382 1.90735 1.66482 1.36161 1.42593 1.22181 0.87253 0.87567 1.00581 0.87680 1.22973 1.00723 0.99299 0.94848 1.23228 1.01283 0.95001 0.98201 1.23208 0.87470 0.97840 0.91166 0.89956 1.19253 0.82759 0.87146 0.83509 1.90592 1.44498 1.49579 1.53395 1.42617 1.15306 1.05647 1.51096 1.18836 1.51458 0.80147 0.97231 0.90274 1.25267 0.94591 0.99520 0.94442 1.69817 1.42461 1.33047 1.01013 0.86200 0.78841 0.82735 0.78173 1.20266 1.21252 1.19867 1.21728 0.94537 0.94741 0.92354 1.23073 0.91995 1.01845 1.04079 1.23347 1.04195 0.99988 0.97169 1.89182 1.41220 1.21977 1.71010 0.88120 0.91911 0.91902 0.89010 0.90021 0.89844 0.88769 0.92434 0.88141 0.87408 0.89761 0.89765 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.64 10.56 -39.24 -0.41 -5.06 16 3 C 0.46 7.48 7.07 36.01 0.25 7.73 16 4 O -0.48 -9.95 16.28 -25.38 -0.41 -10.36 16 5 C 0.08 1.30 3.95 -27.31 -0.11 1.19 16 6 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 7 C -0.14 -1.72 6.65 -24.97 -0.17 -1.89 16 8 C -0.14 -2.13 5.93 -24.50 -0.15 -2.27 16 9 C 0.06 1.29 2.83 -26.83 -0.08 1.21 16 10 H 0.08 1.47 7.38 -51.93 -0.38 1.09 16 11 C 0.49 12.80 6.40 -10.99 -0.07 12.73 16 12 O -0.51 -16.06 14.29 -13.52 -0.19 -16.25 16 13 N -0.42 -10.50 2.84 -107.73 -0.31 -10.80 16 14 C -0.35 -9.56 7.95 -14.93 -0.12 -9.68 16 15 H 0.08 2.07 7.23 -52.48 -0.38 1.69 16 16 C 0.07 2.09 4.38 -17.47 -0.08 2.01 16 17 N -0.83 -25.24 11.71 55.50 0.65 -24.59 16 18 Si 0.91 22.35 29.59 -169.99 -5.03 17.32 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 22 C 0.07 1.37 4.56 -67.93 -0.31 1.06 16 23 C -0.17 -2.95 9.80 -26.73 -0.26 -3.21 16 24 C -0.21 -3.28 9.98 -26.73 -0.27 -3.55 16 25 O -0.32 -6.86 10.02 -64.32 -0.64 -7.50 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 31 H 0.08 1.43 8.05 -51.93 -0.42 1.02 16 32 H 0.09 1.19 6.66 -51.93 -0.35 0.85 16 33 H 0.27 7.75 8.32 -40.82 -0.34 7.41 16 34 H 0.10 1.66 6.63 -51.93 -0.34 1.31 16 35 H 0.11 2.08 6.71 -51.93 -0.35 1.73 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -37.65 320.45 -6.94 -44.59 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.13 Total: 1.07 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.28 Total: 6.77 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.34 Total: -35.39 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.67 Total: -39.18 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.65 -6.94 -44.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291363811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.100 kcal (2) G-P(sol) polarization free energy of solvation -37.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds