Wall clock time and date at job start Tue Mar 31 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00564 * 2 1 4 4 O 1.20825 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.86765 * 304.55167 * 5 3 2 7 7 C 1.54101 * 110.00368 * 65.63863 * 5 3 2 8 8 C 1.55230 * 104.22652 * 121.53507 * 7 5 3 9 9 C 1.54995 * 101.90228 * 20.84574 * 8 7 5 10 10 H 1.09004 * 110.61764 * 81.56545 * 9 8 7 11 11 C 1.50698 * 110.61995 * 204.40619 * 9 8 7 12 12 O 1.21294 * 119.99886 * 112.82183 * 11 9 8 13 13 N 1.34774 * 120.00187 * 292.82226 * 11 9 8 14 14 C 1.37091 * 120.00252 * 179.97438 * 13 11 9 15 15 H 1.08003 * 120.00531 * 223.90477 * 14 13 11 16 16 C 1.38954 * 119.99995 * 43.90133 * 14 13 11 17 17 N 1.31410 * 119.99787 * 18.33989 * 16 14 13 18 18 Si 1.86802 * 120.00170 * 198.33356 * 16 14 13 19 19 H 1.48503 * 109.46834 * 90.00585 * 18 16 14 20 20 H 1.48501 * 109.47129 * 209.99823 * 18 16 14 21 21 H 1.48492 * 109.47328 * 330.00414 * 18 16 14 22 22 C 1.46504 * 120.00079 * 359.97438 * 13 11 9 23 23 C 1.52992 * 117.50113 * 182.98034 * 22 13 11 24 24 C 1.52999 * 117.49917 * 114.35443 * 22 13 11 25 25 O 1.43750 * 109.87519 * 183.54500 * 5 3 2 26 26 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46615 * 300.00525 * 1 2 3 28 28 H 1.09003 * 109.47106 * 59.99882 * 1 2 3 29 29 H 1.09002 * 110.48313 * 240.20049 * 7 5 3 30 30 H 1.08997 * 110.48701 * 2.71336 * 7 5 3 31 31 H 1.08995 * 110.92222 * 262.74595 * 8 7 5 32 32 H 1.09001 * 111.07635 * 139.01519 * 8 7 5 33 33 H 0.97003 * 120.00613 * 174.87662 * 17 16 14 34 34 H 1.09000 * 115.54750 * 328.69208 * 22 13 11 35 35 H 1.09006 * 117.49724 * 359.97438 * 23 22 13 36 36 H 1.08991 * 117.50093 * 145.02149 * 23 22 13 37 37 H 1.08995 * 117.49759 * 214.98232 * 24 22 13 38 38 H 1.08998 * 117.49830 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9671 0.7133 0.8434 7 6 4.1236 0.7060 -1.3200 8 6 4.9330 1.8815 -1.9304 9 6 5.2002 2.7659 -0.6859 10 1 6.0506 2.3853 -0.1201 11 6 5.4337 4.1980 -1.0927 12 8 4.6303 5.0538 -0.7875 13 7 6.5353 4.5278 -1.7958 14 6 6.7474 5.8305 -2.1663 15 1 7.0851 6.0594 -3.1664 16 6 6.5280 6.8565 -1.2553 17 7 6.4728 6.5925 0.0308 18 14 6.3116 8.6111 -1.8588 19 1 4.8729 8.8707 -2.1201 20 1 6.8048 9.5549 -0.8238 21 1 7.0847 8.8024 -3.1121 22 6 7.5060 3.4942 -2.1640 23 6 8.7697 3.9422 -2.9010 24 6 7.6750 3.1817 -3.6522 25 8 3.9840 2.6476 0.0831 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.7763 -0.1445 -1.1233 30 1 3.3095 0.4154 -1.9841 31 1 4.3402 2.4197 -2.6700 32 1 5.8683 1.5292 -2.3654 33 1 6.3942 7.3165 0.6717 34 1 7.5994 2.6655 -1.4621 35 1 8.8786 5.0060 -3.1123 36 1 9.6948 3.4084 -2.6839 37 1 7.8800 2.1477 -3.9292 38 1 7.0636 3.7449 -4.3573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291363811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:10 Heat of formation + Delta-G solvation = -137.320101 kcal Electronic energy + Delta-G solvation = -23298.874281 eV Core-core repulsion = 19721.700668 eV Total energy + Delta-G solvation = -3577.173613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91311 -40.83585 -39.41127 -37.67032 -37.48105 -34.76940 -33.41738 -32.82462 -31.44079 -28.70198 -27.17940 -25.17770 -23.31140 -23.10115 -22.54194 -21.91280 -21.16557 -19.22159 -18.39480 -18.01957 -17.80013 -17.56659 -17.16233 -16.60055 -16.22222 -15.83890 -15.45884 -15.20167 -14.96684 -14.56068 -14.32565 -14.25462 -13.89322 -13.30883 -13.04208 -12.96531 -12.86656 -12.71895 -12.65748 -12.46681 -12.18146 -12.06339 -12.03320 -11.87703 -11.60895 -11.49382 -11.16432 -10.88190 -10.71508 -9.89571 -8.98947 -8.22213 -6.00612 1.03011 1.31579 1.37559 1.42494 1.46761 2.16686 2.37392 2.66951 3.13910 3.21174 3.36786 3.45527 3.71990 3.79444 3.92994 4.03991 4.16160 4.22681 4.28604 4.29582 4.31155 4.43538 4.50718 4.65388 4.69124 4.83844 4.96026 4.99030 5.07420 5.12852 5.20922 5.33919 5.46687 5.55495 5.69873 6.19317 6.66180 7.00511 7.22278 7.65772 8.34312 8.86576 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.005367 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.019997 B = 5215.444485 C = 6194.730777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.458 3.542 4 O -0.536 6.536 5 C 0.072 3.928 6 H 0.144 0.856 7 C -0.123 4.123 8 C -0.129 4.129 9 C 0.069 3.931 10 H 0.109 0.891 11 C 0.466 3.534 12 O -0.584 6.584 13 N -0.435 5.435 14 C -0.354 4.354 15 H 0.083 0.917 16 C 0.018 3.982 17 N -0.873 5.873 18 Si 0.968 3.032 19 H -0.297 1.297 20 H -0.280 1.280 21 H -0.247 1.247 22 C 0.040 3.960 23 C -0.173 4.173 24 C -0.174 4.174 25 O -0.370 6.370 26 H 0.145 0.855 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.258 0.742 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -20.047 -4.094 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.301 3.699 4 O -0.425 6.425 5 C 0.013 3.987 6 H 0.161 0.839 7 C -0.161 4.161 8 C -0.167 4.167 9 C 0.008 3.992 10 H 0.126 0.874 11 C 0.254 3.746 12 O -0.464 6.464 13 N -0.157 5.157 14 C -0.482 4.482 15 H 0.101 0.899 16 C -0.188 4.188 17 N -0.508 5.508 18 Si 0.793 3.207 19 H -0.225 1.225 20 H -0.205 1.205 21 H -0.170 1.170 22 C -0.064 4.064 23 C -0.210 4.210 24 C -0.213 4.213 25 O -0.289 6.289 26 H 0.163 0.837 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.305 -19.070 -3.644 19.459 hybrid contribution -0.654 1.748 0.220 1.880 sum -1.959 -17.321 -3.424 17.765 Atomic orbital electron populations 1.23611 0.74637 1.06146 1.02230 1.86458 1.24943 1.31128 1.83812 1.24135 0.92476 0.81579 0.71685 1.90720 1.67792 1.38281 1.45675 1.22692 0.86606 0.85360 1.04056 0.83850 1.23044 1.01266 0.99159 0.92586 1.23204 1.03033 0.94859 0.95573 1.23128 0.88111 0.94230 0.93687 0.87365 1.20432 0.82041 0.89449 0.82642 1.90531 1.47043 1.52428 1.56437 1.42842 1.16330 1.06140 1.50373 1.19135 1.49857 0.82001 0.97197 0.89892 1.26103 0.94732 1.03413 0.94586 1.69933 1.45179 1.33541 1.02142 0.85353 0.77613 0.78800 0.78959 1.22467 1.20536 1.17009 1.22115 0.94582 0.94508 0.95204 1.23143 0.93206 1.00946 1.03755 1.23376 1.01820 1.02137 0.93957 1.89131 1.42059 1.26078 1.71660 0.83664 0.92521 0.92462 0.83725 0.89102 0.92834 0.85108 0.93258 0.84988 0.90452 0.86159 0.84785 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.13 10.56 -51.36 -0.54 -8.67 16 3 C 0.46 14.75 7.07 71.24 0.50 15.25 16 4 O -0.54 -23.31 16.28 28.31 0.46 -22.84 16 5 C 0.07 2.06 3.95 30.22 0.12 2.18 16 6 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 7 C -0.12 -2.48 6.65 31.73 0.21 -2.27 16 8 C -0.13 -3.57 5.93 32.04 0.19 -3.38 16 9 C 0.07 2.71 2.83 30.53 0.09 2.80 16 10 H 0.11 3.61 7.38 -2.38 -0.02 3.59 16 11 C 0.47 25.22 6.40 87.66 0.56 25.78 16 12 O -0.58 -39.43 14.29 15.16 0.22 -39.22 16 13 N -0.44 -21.78 2.84 -613.14 -1.74 -23.52 16 14 C -0.35 -19.86 7.95 84.04 0.67 -19.20 16 15 H 0.08 4.43 7.23 -2.91 -0.02 4.41 16 16 C 0.02 1.06 4.38 84.93 0.37 1.43 16 17 N -0.87 -55.78 11.71 21.66 0.25 -55.53 16 18 Si 0.97 47.66 29.59 68.60 2.03 49.69 16 19 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.25 -10.90 7.11 99.48 0.71 -10.20 16 22 C 0.04 1.42 4.56 44.99 0.21 1.63 16 23 C -0.17 -5.42 9.80 30.59 0.30 -5.12 16 24 C -0.17 -4.80 9.98 30.59 0.31 -4.50 16 25 O -0.37 -16.29 10.02 -121.17 -1.21 -17.50 16 26 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 28 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.70 7.70 -2.39 -0.02 1.68 16 31 H 0.05 1.79 8.05 -2.39 -0.02 1.78 16 32 H 0.13 2.59 6.66 -2.39 -0.02 2.58 16 33 H 0.26 16.00 8.32 -92.71 -0.77 15.23 16 34 H 0.13 3.79 6.63 -2.39 -0.02 3.77 16 35 H 0.08 2.92 6.71 -2.38 -0.02 2.90 16 36 H 0.12 2.89 8.14 -2.39 -0.02 2.88 16 37 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -92.78 320.45 5.25 -87.53 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.07 Total: 13.78 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 4.72 Total: 16.28 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.49 Total: -79.05 kcal Atomic # 8 Polarization: -87.15 SS G_CDS: -1.08 Total: -88.23 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -92.78 5.25 -87.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291363811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.792 kcal (2) G-P(sol) polarization free energy of solvation -92.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds