Wall clock time and date at job start Tue Mar 31 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99767 * 2 1 4 4 C 1.50700 * 109.47192 * 66.04187 * 3 2 1 5 5 O 1.21286 * 120.00023 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99865 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00026 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00208 * 141.08421 * 7 6 4 9 9 C 1.38950 * 119.99861 * 321.08936 * 7 6 4 10 10 N 1.31413 * 120.00228 * 157.42603 * 9 7 6 11 11 Si 1.86796 * 120.00094 * 337.42384 * 9 7 6 12 12 H 1.48498 * 109.47019 * 94.69829 * 11 9 7 13 13 H 1.48505 * 109.47448 * 214.69686 * 11 9 7 14 14 H 1.48497 * 109.47017 * 334.69882 * 11 9 7 15 15 C 1.46500 * 120.00040 * 359.97438 * 6 4 3 16 16 C 1.47199 * 109.47291 * 268.70282 * 15 6 4 17 17 N 5.44293 * 135.23012 * 14.09052 * 2 1 3 18 18 C 1.46891 * 111.00323 * 236.04400 * 2 1 3 19 19 H 1.08999 * 109.61098 * 62.77062 * 18 2 1 20 20 C 1.53858 * 109.61110 * 182.93251 * 18 2 1 21 21 C 1.55136 * 106.90336 * 167.17187 * 20 18 2 22 22 S 1.83454 * 102.20341 * 317.88554 * 21 20 18 23 23 C 1.54273 * 109.60894 * 302.43010 * 18 2 1 24 24 H 1.09005 * 109.46963 * 65.77700 * 1 2 3 25 25 H 1.09005 * 109.47066 * 185.77605 * 1 2 3 26 26 H 1.09000 * 109.47457 * 305.77302 * 1 2 3 27 27 H 1.09002 * 109.47102 * 306.04045 * 3 2 1 28 28 H 1.09004 * 109.46848 * 186.04509 * 3 2 1 29 29 H 0.97002 * 120.00509 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47304 * 148.69975 * 15 6 4 31 31 H 1.09007 * 109.46812 * 28.70313 * 15 6 4 32 32 H 1.09005 * 109.97493 * 286.53659 * 20 18 2 33 33 H 1.08999 * 109.97473 * 47.81150 * 20 18 2 34 34 H 1.08992 * 110.86035 * 199.70108 * 21 20 18 35 35 H 1.09010 * 111.02676 * 76.13909 * 21 20 18 36 36 H 1.09002 * 110.40373 * 330.92215 * 23 18 2 37 37 H 1.09004 * 110.40190 * 93.34025 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2984 5 8 1.0052 1.4454 2.1410 6 7 2.0186 3.3200 1.5236 7 6 1.6929 3.9346 2.7050 8 1 2.4037 4.5892 3.1872 9 6 0.4481 3.7151 3.2821 10 7 0.2771 3.9115 4.5702 11 14 -0.9825 3.1410 2.2270 12 1 -1.0800 1.6605 2.2886 13 1 -2.2430 3.7415 2.7328 14 1 -0.7617 3.5645 0.8210 15 6 2.7829 4.0463 0.5065 16 6 4.2228 3.8600 0.7486 17 7 5.3331 3.7179 0.9332 18 6 1.9954 -0.7660 -1.1375 19 1 1.6880 -0.2935 -2.0704 20 6 3.5318 -0.8070 -1.0656 21 6 4.0022 -1.8828 -2.0795 22 16 2.7916 -3.2329 -1.8020 23 6 1.4534 -2.2094 -1.0849 24 1 -0.3633 0.4217 -0.9372 25 1 -0.3633 -1.0225 0.1034 26 1 -0.3634 0.6007 0.8338 27 1 1.5610 1.9273 -0.8310 28 1 3.0797 1.3444 -0.1082 29 1 -0.5919 3.7586 4.9731 30 1 2.5400 5.1076 0.5585 31 1 2.5280 3.6634 -0.4818 32 1 3.9433 0.1654 -1.3366 33 1 3.8504 -1.0791 -0.0594 34 1 5.0144 -2.2158 -1.8504 35 1 3.9403 -1.5101 -3.1021 36 1 1.2597 -2.5053 -0.0539 37 1 0.5464 -2.2967 -1.6831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347168523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:24 Heat of formation + Delta-G solvation = 8.343142 kcal Electronic energy + Delta-G solvation = -20898.924039 eV Core-core repulsion = 17803.112480 eV Total energy + Delta-G solvation = -3095.811558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17378 -39.13468 -37.74913 -36.15668 -34.66439 -34.12759 -30.96246 -29.33476 -28.89136 -27.20985 -25.37537 -23.93541 -21.73769 -20.88411 -19.61547 -18.61332 -17.93862 -17.71924 -17.24706 -16.84107 -16.37020 -15.69656 -15.45363 -15.34936 -15.02081 -14.89951 -14.65956 -14.38265 -14.16786 -13.95668 -13.65112 -13.33890 -13.21240 -13.13597 -12.90846 -12.85906 -12.55019 -12.26417 -12.17525 -12.11442 -11.96266 -11.90518 -11.01044 -10.63565 -10.33157 -9.80378 -9.27052 -8.71609 -8.36318 -6.12390 0.82749 1.31839 1.36558 1.42741 1.59347 1.61099 1.84089 2.01177 2.51073 2.56291 2.96725 3.14082 3.31817 3.52868 3.73746 3.83478 3.95793 4.07374 4.17126 4.23330 4.33771 4.45214 4.52201 4.55496 4.62751 4.66318 4.72520 4.76688 4.85791 5.07759 5.18530 5.70572 5.75823 5.93845 6.07621 6.58278 6.76561 6.89948 7.32688 7.84468 8.71941 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.005961 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.569348 B = 4696.342836 C = 5772.998271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.535 5.535 3 C 0.043 3.957 4 C 0.447 3.553 5 O -0.554 6.554 6 N -0.476 5.476 7 C -0.353 4.353 8 H 0.063 0.937 9 C 0.044 3.956 10 N -0.912 5.912 11 Si 0.963 3.037 12 H -0.263 1.263 13 H -0.319 1.319 14 H -0.243 1.243 15 C 0.191 3.809 16 C 0.221 3.779 17 N -0.482 5.482 18 C 0.084 3.916 19 H 0.078 0.922 20 C -0.126 4.126 21 C -0.053 4.053 22 S -0.337 6.337 23 C -0.055 4.055 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.271 0.729 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 -6.159 -19.934 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.260 5.260 3 C -0.088 4.088 4 C 0.238 3.762 5 O -0.436 6.436 6 N -0.201 5.201 7 C -0.480 4.480 8 H 0.081 0.919 9 C -0.160 4.160 10 N -0.549 5.549 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.249 1.249 14 H -0.167 1.167 15 C 0.065 3.935 16 C -0.098 4.098 17 N -0.161 5.161 18 C -0.025 4.025 19 H 0.095 0.905 20 C -0.165 4.165 21 C -0.201 4.201 22 S -0.112 6.112 23 C -0.203 4.203 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.995 -8.070 -18.871 20.742 hybrid contribution -1.371 1.481 0.302 2.041 sum 1.624 -6.589 -18.569 19.770 Atomic orbital electron populations 1.22664 0.86544 1.03158 1.01246 1.61578 1.08912 1.12672 1.42836 1.22107 1.02648 0.89547 0.94485 1.21273 0.82951 0.81321 0.90630 1.90531 1.41293 1.63642 1.48097 1.43689 1.50313 1.10141 1.15949 1.18625 0.99872 1.30448 0.99043 0.91899 1.26017 1.01076 0.93292 0.95647 1.69896 1.25109 1.47896 1.11975 0.85634 0.76370 0.78739 0.80049 1.18957 1.24922 1.16666 1.19641 0.76944 1.02626 0.94254 1.30450 0.95909 0.91695 0.91764 1.81056 1.15196 1.10318 1.09572 1.22540 0.94739 0.92508 0.92733 0.90466 1.22651 0.93558 1.00430 0.99854 1.24241 0.99550 0.93209 1.03063 1.87724 1.19363 1.21166 1.82946 1.24000 0.98054 0.94305 1.03949 0.93690 0.90635 0.92095 0.88531 0.86787 0.91971 0.83470 0.82205 0.87814 0.91322 0.86954 0.86804 0.89461 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 8.90 127.69 1.14 1.46 16 2 N -0.53 -14.59 4.34 -897.37 -3.89 -18.48 16 3 C 0.04 1.13 3.80 85.56 0.33 1.45 16 4 C 0.45 17.67 5.61 87.66 0.49 18.17 16 5 O -0.55 -27.60 9.86 -3.05 -0.03 -27.63 16 6 N -0.48 -18.84 2.18 -645.42 -1.41 -20.25 16 7 C -0.35 -18.29 9.74 84.04 0.82 -17.47 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 C 0.04 2.46 4.77 84.93 0.41 2.87 16 10 N -0.91 -55.38 13.96 21.66 0.30 -55.08 16 11 Si 0.96 45.22 24.16 68.60 1.66 46.88 16 12 H -0.26 -12.98 5.07 99.48 0.50 -12.48 16 13 H -0.32 -15.23 7.11 99.48 0.71 -14.52 16 14 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 15 C 0.19 4.80 5.68 84.57 0.48 5.28 16 16 C 0.22 6.59 15.72 89.46 1.41 8.00 16 17 N -0.48 -16.87 18.53 19.99 0.37 -16.50 16 18 C 0.08 1.65 2.35 45.64 0.11 1.75 16 19 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 20 C -0.13 -2.27 5.05 31.62 0.16 -2.11 16 21 C -0.05 -0.81 7.38 72.71 0.54 -0.27 16 22 S -0.34 -7.23 23.26 -56.49 -1.31 -8.54 16 23 C -0.05 -1.13 5.54 72.41 0.40 -0.73 16 24 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.07 1.93 6.91 -2.38 -0.02 1.91 16 26 H 0.06 2.26 3.87 -2.39 -0.01 2.25 16 27 H 0.10 1.78 7.38 -2.39 -0.02 1.76 16 28 H 0.11 2.59 6.05 -2.38 -0.01 2.57 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.15 3.10 8.05 -2.39 -0.02 3.09 16 31 H 0.16 2.22 6.39 -2.38 -0.02 2.20 16 32 H 0.10 1.48 7.00 -2.38 -0.02 1.46 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 2.16 7.80 -2.39 -0.02 2.14 16 37 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -75.80 308.78 2.84 -72.96 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.88 Total: 8.23 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.27 Total: 18.39 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.62 Total: -110.30 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.03 Total: -27.63 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.66 Total: 46.88 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.31 Total: -8.54 kcal Total: -75.80 2.84 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347168523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.307 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds