Wall clock time and date at job start Tue Mar 31 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 119.99903 * 2 1 4 4 C 1.38612 * 120.00100 * 180.02562 * 2 1 3 5 5 N 1.29689 * 124.94663 * 359.97438 * 4 2 1 6 6 C 1.32124 * 116.86219 * 179.71492 * 5 4 2 7 7 C 1.33332 * 114.57650 * 0.51980 * 6 5 4 8 8 C 1.50705 * 125.94683 * 179.78711 * 7 6 5 9 9 N 1.46895 * 109.46946 * 89.71411 * 8 7 6 10 10 C 1.47965 * 111.00064 * 169.99792 * 9 8 7 11 11 C 1.53931 * 86.18239 * 222.42041 * 10 9 8 12 12 O 1.42894 * 113.73160 * 269.25510 * 11 10 9 13 13 C 1.50703 * 113.73518 * 138.07915 * 11 10 9 14 14 H 1.08000 * 119.99719 * 17.15762 * 13 11 10 15 15 C 1.37873 * 119.99883 * 197.15659 * 13 11 10 16 16 N 1.31515 * 119.99606 * 194.39693 * 15 13 11 17 17 Si 1.86800 * 120.00373 * 14.40572 * 15 13 11 18 18 H 1.48497 * 109.47317 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.46658 * 299.99749 * 17 15 13 20 20 H 1.48498 * 109.47245 * 59.99510 * 17 15 13 21 21 C 1.48191 * 111.07148 * 70.56952 * 9 8 7 22 22 S 1.70959 * 124.94765 * 179.97438 * 4 2 1 23 23 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46990 * 299.99327 * 1 2 3 25 25 H 1.08993 * 109.47606 * 59.99596 * 1 2 3 26 26 H 1.09000 * 109.47422 * 270.00576 * 3 2 1 27 27 H 1.09005 * 109.47455 * 30.00155 * 3 2 1 28 28 H 1.09001 * 109.47482 * 150.00466 * 3 2 1 29 29 H 1.07993 * 122.71031 * 180.34144 * 6 5 4 30 30 H 1.08998 * 109.47162 * 329.71569 * 8 7 6 31 31 H 1.08999 * 109.46993 * 209.71706 * 8 7 6 32 32 H 1.08994 * 113.75787 * 108.09572 * 10 9 8 33 33 H 1.09008 * 113.85381 * 336.75361 * 10 9 8 34 34 H 0.96707 * 114.00278 * 174.15409 * 12 11 10 35 35 H 0.96998 * 120.00288 * 354.87234 * 16 15 13 36 36 H 1.09008 * 113.75708 * 23.23197 * 21 9 8 37 37 H 1.09000 * 113.82289 * 251.80905 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1581 -1.2004 -0.0005 5 7 1.6089 -2.3753 -0.0006 6 6 2.4239 -3.4152 -0.0070 7 6 3.7203 -3.1038 -0.0016 8 6 4.8655 -4.0835 -0.0023 9 7 5.2374 -4.4010 -1.3874 10 6 6.5022 -5.1673 -1.4345 11 6 6.8843 -4.2657 -2.6222 12 8 6.4937 -4.7914 -3.8923 13 6 8.3177 -3.8011 -2.5946 14 1 9.0376 -4.3079 -1.9691 15 6 8.7099 -2.7292 -3.3679 16 7 9.9886 -2.4966 -3.5692 17 14 7.4253 -1.6070 -4.1294 18 1 8.1007 -0.5387 -4.9089 19 1 6.5490 -2.3979 -5.0306 20 1 6.6048 -0.9930 -3.0548 21 6 5.8904 -3.2432 -2.0426 22 16 3.8613 -1.3478 -0.0012 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 2.3790 1.5835 -1.0276 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 2.0686 -4.4350 -0.0131 30 1 4.5631 -4.9962 0.5111 31 1 5.7201 -3.6436 0.5117 32 1 6.3709 -6.2154 -1.7032 33 1 7.1342 -5.0293 -0.5572 34 1 6.6510 -4.1892 -4.6325 35 1 10.6566 -3.0330 -3.1144 36 1 6.3418 -2.5398 -1.3428 37 1 5.2710 -2.7569 -2.7963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355037399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:14 Heat of formation + Delta-G solvation = 30.398333 kcal Electronic energy + Delta-G solvation = -20283.906243 eV Core-core repulsion = 17189.051070 eV Total energy + Delta-G solvation = -3094.855173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15072 -40.49967 -37.70401 -36.45262 -34.64710 -32.72884 -29.58642 -29.21368 -27.85191 -27.17737 -26.08370 -24.02720 -23.11590 -20.95294 -20.34127 -19.93239 -19.14386 -17.51806 -17.30036 -16.79565 -16.52888 -16.34947 -15.98570 -15.65729 -15.26671 -14.96582 -14.62120 -14.60953 -14.18246 -13.78412 -13.54479 -13.41544 -13.19592 -12.96671 -12.85367 -12.64491 -12.40753 -12.14752 -11.96066 -11.63546 -11.26785 -10.92198 -10.90063 -10.59404 -10.26352 -10.15334 -9.73261 -8.82744 -8.51957 -6.58865 0.00381 0.16360 0.83362 1.35575 1.44306 1.62250 1.90361 1.99149 2.34945 2.89587 3.02102 3.61979 3.70238 3.84318 4.02201 4.08701 4.18603 4.25615 4.38036 4.43376 4.44965 4.62484 4.68132 4.68898 4.76576 4.84141 4.89457 4.91687 5.17313 5.19409 5.33225 5.69181 5.76091 5.88260 5.98606 6.11180 6.39740 6.92895 7.00570 7.24985 8.50046 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021539 B = 0.005416 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.642259 B = 5168.189046 C = 5935.141606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.592 5.592 3 C 0.085 3.915 4 C 0.306 3.694 5 N -0.573 5.573 6 C 0.094 3.906 7 C -0.265 4.265 8 C 0.105 3.895 9 N -0.467 5.467 10 C 0.029 3.971 11 C 0.188 3.812 12 O -0.570 6.570 13 C -0.624 4.624 14 H 0.030 0.970 15 C -0.006 4.006 16 N -0.923 5.923 17 Si 1.071 2.929 18 H -0.284 1.284 19 H -0.251 1.251 20 H -0.249 1.249 21 C -0.016 4.016 22 S 0.087 5.913 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.187 0.813 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 7.685 9.064 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.312 5.312 3 C -0.057 4.057 4 C -0.063 4.063 5 N -0.300 5.300 6 C -0.057 4.057 7 C -0.388 4.388 8 C -0.025 4.025 9 N -0.190 5.190 10 C -0.099 4.099 11 C 0.147 3.853 12 O -0.378 6.378 13 C -0.662 4.662 14 H 0.048 0.952 15 C -0.206 4.206 16 N -0.558 5.558 17 Si 0.892 3.108 18 H -0.210 1.210 19 H -0.176 1.176 20 H -0.174 1.174 21 C -0.145 4.145 22 S 0.336 5.664 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.204 0.796 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.216 0.784 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.142 9.044 8.209 22.707 hybrid contribution 1.507 -1.571 1.139 2.457 sum -17.636 7.473 9.348 21.313 Atomic orbital electron populations 1.21824 0.76503 1.03767 1.02632 1.46101 1.06699 1.00734 1.77699 1.22034 0.97165 0.83361 1.03153 1.23845 0.93282 0.90881 0.98340 1.66430 1.38173 0.96911 1.28462 1.21486 0.87475 0.98533 0.98158 1.25131 0.99116 0.94772 1.19771 1.20918 0.93327 0.96901 0.91350 1.68680 1.25669 1.10593 1.14081 1.23884 0.89836 0.99323 0.96868 1.20426 0.90663 0.91504 0.82706 1.86342 1.86915 1.47512 1.17041 1.22504 0.95538 1.17319 1.30868 0.95207 1.27124 1.00484 0.98058 0.94978 1.70946 1.01465 1.44055 1.39331 0.83797 0.73392 0.75926 0.77686 1.21000 1.17649 1.17358 1.24747 0.96032 0.94680 0.99059 1.84016 1.03463 1.04635 1.74257 0.91046 0.90281 0.90899 0.91626 0.87004 0.91679 0.79600 0.86949 0.93697 0.89475 0.90524 0.78402 0.93323 0.91714 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.49 10.76 127.77 1.37 2.87 16 2 N -0.59 -12.15 3.38 -761.01 -2.57 -14.72 16 3 C 0.08 1.19 10.45 127.77 1.34 2.53 16 4 C 0.31 8.40 7.75 179.32 1.39 9.79 16 5 N -0.57 -17.16 9.54 -202.03 -1.93 -19.08 16 6 C 0.09 2.75 11.24 83.54 0.94 3.69 16 7 C -0.26 -8.14 5.64 24.58 0.14 -8.00 16 8 C 0.11 3.31 5.35 85.56 0.46 3.77 16 9 N -0.47 -17.89 6.25 -914.73 -5.72 -23.61 16 10 C 0.03 1.21 7.36 86.41 0.64 1.85 16 11 C 0.19 8.97 1.07 -10.90 -0.01 8.96 16 12 O -0.57 -27.61 13.47 -148.98 -2.01 -29.62 16 13 C -0.62 -34.86 9.04 25.60 0.23 -34.63 16 14 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 15 C -0.01 -0.32 5.44 84.65 0.46 0.14 16 16 N -0.92 -55.92 13.70 21.45 0.29 -55.63 16 17 Si 1.07 47.53 24.55 68.60 1.68 49.22 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.25 -9.97 5.81 99.48 0.58 -9.39 16 20 H -0.25 -10.09 6.48 99.48 0.64 -9.44 16 21 C -0.02 -0.67 4.06 86.36 0.35 -0.32 16 22 S 0.09 2.52 21.48 -56.49 -1.21 1.30 16 23 H 0.07 1.39 7.12 -2.39 -0.02 1.37 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 0.86 8.07 -2.38 -0.02 0.84 16 28 H 0.06 0.99 7.05 -2.39 -0.02 0.98 16 29 H 0.19 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.04 1.44 7.70 -2.39 -0.02 1.42 16 32 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.08 3.03 7.75 -2.38 -0.02 3.02 16 34 H 0.37 16.61 6.07 -74.05 -0.45 16.16 16 35 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 36 H 0.06 2.80 7.62 -2.38 -0.02 2.79 16 37 H 0.07 2.94 6.86 -2.39 -0.02 2.93 16 Total: -1.00 -68.66 313.69 -3.75 -72.41 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.40 Total: 29.08 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 7.30 Total: -9.35 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -9.92 Total: -113.05 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -2.01 Total: -29.62 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.68 Total: 49.22 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.21 Total: 1.30 kcal Total: -68.66 -3.75 -72.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355037399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.811 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds