Wall clock time and date at job start Tue Mar 31 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00315 * 2 1 4 4 O 1.20825 * 119.99433 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00065 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.42148 * 54.14678 * 5 3 2 7 7 C 1.54481 * 110.37459 * 291.83206 * 5 3 2 8 8 C 1.54684 * 104.08010 * 217.09936 * 7 5 3 9 9 C 1.54486 * 103.98128 * 0.14045 * 8 7 5 10 10 H 1.08998 * 110.36989 * 264.96087 * 9 8 7 11 11 C 1.50695 * 110.37108 * 142.73463 * 9 8 7 12 12 O 1.21291 * 120.00070 * 253.49681 * 11 9 8 13 13 N 1.34776 * 120.00123 * 73.77823 * 11 9 8 14 14 C 1.37094 * 120.00002 * 184.63508 * 13 11 9 15 15 H 1.08003 * 119.99906 * 220.95206 * 14 13 11 16 16 C 1.38942 * 120.00152 * 40.95118 * 14 13 11 17 17 N 1.31410 * 119.99946 * 19.33011 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 199.33268 * 16 14 13 19 19 H 1.48491 * 109.47398 * 59.99797 * 18 16 14 20 20 H 1.48500 * 109.47070 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47072 * 299.99417 * 18 16 14 22 22 C 1.46500 * 119.99993 * 4.63761 * 13 11 9 23 23 C 1.52998 * 117.49976 * 193.41209 * 22 13 11 24 24 C 1.52993 * 117.50199 * 124.78753 * 22 13 11 25 25 O 1.44425 * 104.89685 * 23.84485 * 9 8 7 26 26 H 1.08999 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46684 * 299.99706 * 1 2 3 28 28 H 1.08992 * 109.47280 * 59.99607 * 1 2 3 29 29 H 1.08994 * 110.50822 * 335.84079 * 7 5 3 30 30 H 1.08999 * 110.50386 * 98.41156 * 7 5 3 31 31 H 1.08998 * 110.61648 * 241.48675 * 8 7 5 32 32 H 1.09000 * 110.48765 * 118.72499 * 8 7 5 33 33 H 0.97000 * 119.99888 * 184.14764 * 17 16 14 34 34 H 1.09007 * 115.54981 * 339.11688 * 22 13 11 35 35 H 1.09001 * 117.49971 * 0.02562 * 23 22 13 36 36 H 1.09001 * 117.49642 * 145.01597 * 23 22 13 37 37 H 1.09000 * 117.50193 * 214.97964 * 24 22 13 38 38 H 1.08998 * 117.50033 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9771 0.6974 -0.8288 7 6 4.1321 0.7648 1.3434 8 6 5.3382 1.6930 1.6204 9 6 5.3541 2.6550 0.4118 10 1 6.0392 2.2911 -0.3539 11 6 5.7478 4.0419 0.8504 12 8 4.9124 4.9192 0.9103 13 7 7.0295 4.3090 1.1707 14 6 7.3708 5.5432 1.6602 15 1 8.2807 6.0223 1.3302 16 6 6.5461 6.1778 2.5809 17 7 5.6679 5.4808 3.2663 18 14 6.6856 8.0219 2.8444 19 1 6.4070 8.7269 1.5676 20 1 5.7022 8.4511 3.8710 21 1 8.0582 8.3538 3.3039 22 6 8.0578 3.2804 0.9958 23 6 9.4162 3.5196 1.6579 24 6 9.2744 3.6362 0.1390 25 8 3.9977 2.6506 -0.0842 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 3.3862 0.8599 2.1324 30 1 4.4596 -0.2707 1.2514 31 1 6.2631 1.1179 1.6630 32 1 5.1885 2.2467 2.5473 33 1 5.0514 5.9313 3.8646 34 1 7.6933 2.2540 0.9507 35 1 9.5446 4.4421 2.2241 36 1 9.9455 2.6506 2.0488 37 1 9.7106 2.8440 -0.4695 38 1 9.3095 4.6355 -0.2949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361717781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:18 Heat of formation + Delta-G solvation = -137.030675 kcal Electronic energy + Delta-G solvation = -23261.946826 eV Core-core repulsion = 19684.785764 eV Total energy + Delta-G solvation = -3577.161062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89863 -40.87328 -39.43604 -37.67903 -37.49189 -34.75599 -33.43797 -32.84440 -31.43259 -28.73869 -27.18523 -25.26367 -23.36240 -22.96202 -22.51339 -21.96102 -21.27233 -19.23643 -18.36521 -17.92487 -17.83492 -17.47278 -17.24667 -16.56130 -16.38311 -15.86146 -15.40681 -15.10337 -14.85421 -14.78590 -14.45710 -14.28469 -13.77645 -13.44999 -13.06546 -12.86340 -12.83921 -12.71131 -12.69635 -12.42465 -12.19214 -12.11673 -11.92070 -11.88344 -11.75461 -11.53285 -11.14290 -11.00406 -10.68877 -9.91283 -9.02285 -8.22148 -5.98916 1.00256 1.31258 1.34085 1.42962 1.46046 2.18660 2.32956 2.68500 3.11888 3.23468 3.42031 3.48404 3.68833 3.81200 3.93453 4.06877 4.12015 4.15921 4.28811 4.29373 4.32253 4.37556 4.48899 4.57139 4.67556 4.83271 4.92743 4.96496 5.07020 5.16462 5.19333 5.31853 5.45508 5.54989 5.64200 6.16028 6.63465 6.99040 7.21032 7.65339 8.32087 8.83441 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.005334 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.651608 B = 5247.775456 C = 6180.996085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.465 3.535 4 O -0.535 6.535 5 C 0.073 3.927 6 H 0.156 0.844 7 C -0.123 4.123 8 C -0.132 4.132 9 C 0.067 3.933 10 H 0.123 0.877 11 C 0.470 3.530 12 O -0.584 6.584 13 N -0.436 5.436 14 C -0.350 4.350 15 H 0.082 0.918 16 C 0.019 3.981 17 N -0.867 5.867 18 Si 0.962 3.038 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.251 1.251 22 C 0.038 3.962 23 C -0.172 4.172 24 C -0.183 4.183 25 O -0.368 6.368 26 H 0.146 0.854 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.045 0.955 33 H 0.256 0.744 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -18.372 -5.329 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.308 3.692 4 O -0.424 6.424 5 C 0.015 3.985 6 H 0.173 0.827 7 C -0.161 4.161 8 C -0.170 4.170 9 C 0.007 3.993 10 H 0.140 0.860 11 C 0.258 3.742 12 O -0.465 6.465 13 N -0.158 5.158 14 C -0.477 4.477 15 H 0.100 0.900 16 C -0.187 4.187 17 N -0.503 5.503 18 Si 0.787 3.213 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.175 1.175 22 C -0.066 4.066 23 C -0.209 4.209 24 C -0.221 4.221 25 O -0.287 6.287 26 H 0.164 0.836 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.199 -17.439 -5.178 18.193 hybrid contribution -0.688 1.721 0.490 1.917 sum -0.489 -15.718 -4.688 16.410 Atomic orbital electron populations 1.23627 0.74470 1.06220 1.02297 1.86455 1.25056 1.30927 1.83756 1.23757 0.92017 0.81654 0.71725 1.90717 1.67732 1.38253 1.45657 1.22866 0.86944 0.85553 1.03144 0.82737 1.22938 0.96775 1.02518 0.93831 1.22917 1.01141 0.96184 0.96722 1.23051 0.84310 0.94357 0.97627 0.85983 1.20358 0.83500 0.89590 0.80748 1.90513 1.51034 1.49603 1.55342 1.42875 1.04942 1.11257 1.56681 1.19066 1.10795 0.95564 1.22319 0.90006 1.25953 0.96502 1.02810 0.93418 1.69947 1.19755 1.37118 1.23474 0.85502 0.78503 0.80193 0.77105 1.21184 1.21652 1.17465 1.22236 0.84930 0.93031 1.06419 1.23138 0.98657 1.03712 0.95429 1.23327 1.02062 1.02933 0.93791 1.89348 1.29155 1.25267 1.84940 0.83617 0.92680 0.92138 0.91831 0.83420 0.85292 0.93564 0.93483 0.83958 0.90627 0.85920 0.85205 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.15 10.57 -51.45 -0.54 -8.69 16 3 C 0.47 15.02 7.20 71.23 0.51 15.53 16 4 O -0.54 -23.11 16.30 28.21 0.46 -22.65 16 5 C 0.07 2.12 3.82 30.35 0.12 2.23 16 6 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 7 C -0.12 -2.97 6.63 31.67 0.21 -2.76 16 8 C -0.13 -4.07 6.02 31.67 0.19 -3.88 16 9 C 0.07 2.60 2.73 30.35 0.08 2.69 16 10 H 0.12 3.63 7.42 -2.39 -0.02 3.61 16 11 C 0.47 25.11 6.08 87.66 0.53 25.65 16 12 O -0.58 -38.89 14.35 15.13 0.22 -38.67 16 13 N -0.44 -21.74 2.88 -613.16 -1.77 -23.50 16 14 C -0.35 -19.55 7.73 84.04 0.65 -18.90 16 15 H 0.08 4.38 7.39 -2.91 -0.02 4.36 16 16 C 0.02 1.13 4.35 84.92 0.37 1.50 16 17 N -0.87 -54.51 11.67 21.66 0.25 -54.26 16 18 Si 0.96 47.46 29.60 68.60 2.03 49.49 16 19 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 20 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 21 H -0.25 -11.11 7.11 99.48 0.71 -10.41 16 22 C 0.04 1.36 5.83 44.99 0.26 1.62 16 23 C -0.17 -5.43 9.82 30.59 0.30 -5.13 16 24 C -0.18 -5.39 10.12 30.59 0.31 -5.08 16 25 O -0.37 -15.92 10.19 -121.32 -1.24 -17.15 16 26 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.06 1.73 7.86 -2.39 -0.02 1.71 16 30 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.13 2.73 6.99 -2.39 -0.02 2.71 16 32 H 0.05 1.90 7.86 -2.39 -0.02 1.88 16 33 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.14 3.88 5.21 -2.38 -0.01 3.87 16 35 H 0.08 2.90 6.99 -2.39 -0.02 2.89 16 36 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 2.40 8.03 -2.39 -0.02 2.39 16 Total: -1.00 -90.99 320.83 5.22 -85.77 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.07 Total: 14.52 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 4.73 Total: 15.14 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.51 Total: -77.76 kcal Atomic # 8 Polarization: -86.06 SS G_CDS: -1.10 Total: -87.17 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -90.99 5.22 -85.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361717781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.261 kcal (2) G-P(sol) polarization free energy of solvation -90.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds