Wall clock time and date at job start Tue Mar 31 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99754 * 2 1 4 4 O 1.20822 * 120.00207 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00050 * 179.97438 * 3 2 1 6 6 C 1.54849 * 107.14718 * 292.68095 * 5 3 2 7 7 N 1.48491 * 103.85826 * 220.56014 * 6 5 3 8 8 C 1.34772 * 128.16414 * 221.06310 * 7 6 5 9 9 O 1.21688 * 119.99781 * 359.97438 * 8 7 6 10 10 C 1.46370 * 120.00195 * 179.97438 * 8 7 6 11 11 H 1.08005 * 120.00208 * 353.95313 * 10 8 7 12 12 C 1.40051 * 120.00092 * 173.95841 * 10 8 7 13 13 N 1.30675 * 120.00044 * 6.17258 * 12 10 8 14 14 Si 1.86801 * 120.00316 * 186.17191 * 12 10 8 15 15 H 1.48506 * 109.46765 * 94.98085 * 14 12 10 16 16 H 1.48494 * 109.47283 * 214.98608 * 14 12 10 17 17 H 1.48499 * 109.46805 * 334.98547 * 14 12 10 18 18 C 1.48485 * 103.67857 * 41.03709 * 7 6 5 19 19 C 1.51586 * 107.46197 * 179.97438 * 5 3 2 20 20 H 1.08999 * 108.14615 * 358.60606 * 19 5 3 21 21 C 1.51161 * 115.87890 * 236.36041 * 19 5 3 22 22 O 1.42730 * 110.83838 * 330.35815 * 21 19 5 23 23 C 1.42830 * 111.53734 * 65.76353 * 22 21 19 24 24 C 1.49347 * 107.19172 * 51.20880 * 5 3 2 25 25 H 1.08994 * 109.47403 * 300.00352 * 1 2 3 26 26 H 1.09001 * 109.46969 * 60.00470 * 1 2 3 27 27 H 1.09000 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.09002 * 110.55415 * 101.96958 * 6 5 3 29 29 H 1.09001 * 110.67533 * 339.21279 * 6 5 3 30 30 H 0.96994 * 120.00354 * 180.02562 * 13 12 10 31 31 H 1.08998 * 110.53059 * 200.70922 * 18 7 6 32 32 H 1.08999 * 110.52780 * 77.95042 * 18 7 6 33 33 H 1.09001 * 109.20515 * 210.00486 * 21 19 5 34 34 H 1.09007 * 109.20166 * 90.70943 * 21 19 5 35 35 H 1.09001 * 109.31379 * 53.95769 * 23 22 21 36 36 H 1.09001 * 109.31432 * 173.57267 * 23 22 21 37 37 H 1.09002 * 107.92749 * 1.28057 * 24 5 3 38 38 H 1.08994 * 108.02661 * 244.97834 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0515 0.7293 1.3661 7 7 5.1563 1.6470 1.7435 8 6 6.3420 1.3366 2.3039 9 8 6.6085 0.1775 2.5612 10 6 7.3091 2.3937 2.6032 11 1 7.1154 3.4082 2.2872 12 6 8.4858 2.0897 3.2993 13 7 8.7787 0.8466 3.5758 14 14 9.6365 3.4613 3.8324 15 1 9.3286 3.8496 5.2323 16 1 11.0419 2.9894 3.7472 17 1 9.4536 4.6351 2.9415 18 6 4.6469 2.9872 1.3572 19 6 3.9447 2.7428 -0.0002 20 1 3.0268 3.3300 -0.0262 21 6 4.8395 3.1928 -1.1324 22 8 5.6829 2.1267 -1.5675 23 6 4.9272 1.0665 -2.1547 24 6 4.0543 0.4052 -1.1111 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.4206 -0.2909 1.2613 29 1 3.2503 0.7713 2.1040 30 1 9.5935 0.6361 4.0582 31 1 5.4716 3.6902 1.2397 32 1 3.9340 3.3528 2.0962 33 1 5.4580 4.0233 -0.7922 34 1 4.2220 3.5250 -1.9670 35 1 4.2978 1.4690 -2.9484 36 1 5.6093 0.3275 -2.5753 37 1 3.1840 -0.0158 -1.6146 38 1 4.6166 -0.4191 -0.6725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373712454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:59 Heat of formation + Delta-G solvation = -171.741484 kcal Electronic energy + Delta-G solvation = -23887.868357 eV Core-core repulsion = 20309.202121 eV Total energy + Delta-G solvation = -3578.666236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.67481 -40.52587 -39.02800 -37.77859 -37.06363 -34.64572 -34.36097 -32.39872 -29.91666 -28.93157 -27.94362 -26.61859 -25.13402 -23.93456 -22.77338 -21.29508 -19.93597 -19.00419 -18.43906 -17.87258 -17.71500 -17.49013 -17.02253 -16.80978 -16.22039 -15.90719 -15.67988 -15.28172 -14.92718 -14.46836 -14.32915 -14.05650 -13.82959 -13.48106 -13.26553 -13.18678 -12.95930 -12.87522 -12.74718 -12.51080 -12.40985 -12.20766 -11.98215 -11.84898 -11.73177 -11.52953 -11.22665 -10.92375 -10.47959 -9.87801 -9.22893 -8.30351 -6.83066 0.97423 1.40619 1.41872 1.53074 1.58078 2.23782 2.45112 2.75404 3.09044 3.15850 3.29126 3.46935 3.70679 3.84971 3.95545 4.06408 4.23697 4.27210 4.30419 4.32816 4.49265 4.53932 4.59753 4.65950 4.70201 4.78308 4.79272 4.91342 4.95622 4.99568 5.15576 5.25979 5.35458 5.47176 6.00520 6.25971 6.36415 6.55453 6.87711 7.46793 8.44389 8.66818 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.005448 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.056992 B = 5137.959171 C = 5453.308421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.477 3.523 4 O -0.517 6.517 5 C -0.031 4.031 6 C 0.124 3.876 7 N -0.646 5.646 8 C 0.565 3.435 9 O -0.631 6.631 10 C -0.560 4.560 11 H 0.087 0.913 12 C 0.030 3.970 13 N -0.822 5.822 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.247 1.247 18 C 0.117 3.883 19 C -0.131 4.131 20 H 0.124 0.876 21 C 0.071 3.929 22 O -0.390 6.390 23 C 0.061 3.939 24 C -0.141 4.141 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.275 0.725 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.903 3.856 -11.131 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.406 6.406 5 C -0.033 4.033 6 C 0.000 4.000 7 N -0.383 5.383 8 C 0.373 3.627 9 O -0.518 6.518 10 C -0.596 4.596 11 H 0.105 0.895 12 C -0.185 4.185 13 N -0.451 5.451 14 Si 0.816 3.184 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.170 1.170 18 C -0.006 4.006 19 C -0.150 4.150 20 H 0.141 0.859 21 C -0.005 4.005 22 O -0.309 6.309 23 C -0.016 4.016 24 C -0.179 4.179 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.587 3.333 -10.836 17.695 hybrid contribution -0.043 0.047 0.671 0.674 sum -13.629 3.381 -10.165 17.335 Atomic orbital electron populations 1.23639 0.74247 1.05929 1.02881 1.86528 1.25394 1.32068 1.83374 1.23645 0.91748 0.81574 0.71024 1.90569 1.66898 1.36639 1.46526 1.20024 0.87043 0.98082 0.98172 1.22374 0.89821 0.95336 0.92505 1.49127 1.15609 1.07641 1.65942 1.18314 0.79413 0.88995 0.75973 1.90552 1.78327 1.23394 1.59556 1.21306 1.03886 0.95283 1.39135 0.89490 1.26975 0.99318 0.98741 0.93463 1.70192 1.23161 1.21412 1.30373 0.85021 0.76347 0.77730 0.79311 1.18759 1.19686 1.16990 1.22621 0.97586 0.86388 0.94045 1.22073 1.02007 0.93516 0.97397 0.85857 1.22356 0.93160 0.89897 0.95101 1.88238 1.33160 1.30152 1.79327 1.22363 0.95124 0.90356 0.93770 1.21137 1.01890 0.98557 0.96283 0.92022 0.91026 0.85031 0.91661 0.92593 0.91541 0.89900 0.91769 0.87853 0.90343 0.90470 0.87959 0.88302 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.78 9.75 -51.36 -0.50 -9.28 16 3 C 0.48 13.46 5.84 71.24 0.42 13.87 16 4 O -0.52 -15.55 14.62 21.98 0.32 -15.23 16 5 C -0.03 -0.97 0.91 -53.93 -0.05 -1.02 16 6 C 0.12 5.00 6.11 86.63 0.53 5.53 16 7 N -0.65 -30.81 3.32 -809.59 -2.69 -33.50 16 8 C 0.57 34.05 7.85 86.36 0.68 34.73 16 9 O -0.63 -43.69 15.34 -4.31 -0.07 -43.75 16 10 C -0.56 -32.45 9.09 24.83 0.23 -32.22 16 11 H 0.09 4.55 6.50 -2.91 -0.02 4.53 16 12 C 0.03 1.70 5.49 85.30 0.47 2.17 16 13 N -0.82 -51.13 11.85 21.84 0.26 -50.87 16 14 Si 1.00 41.55 29.56 68.60 2.03 43.57 16 15 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 C 0.12 4.34 6.50 86.60 0.56 4.90 16 19 C -0.13 -3.96 2.78 -11.25 -0.03 -3.99 16 20 H 0.12 3.42 5.88 -2.39 -0.01 3.41 16 21 C 0.07 1.97 6.26 71.38 0.45 2.41 16 22 O -0.39 -13.09 10.88 -148.98 -1.62 -14.71 16 23 C 0.06 1.58 6.80 71.42 0.49 2.06 16 24 C -0.14 -3.95 5.26 28.86 0.15 -3.80 16 25 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 26 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 27 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 2.89 6.90 -2.39 -0.02 2.87 16 29 H 0.06 2.15 7.70 -2.39 -0.02 2.13 16 30 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 31 H 0.08 3.08 5.87 -2.39 -0.01 3.07 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 2.74 7.36 -2.39 -0.02 2.72 16 34 H 0.08 1.66 7.97 -2.38 -0.02 1.64 16 35 H 0.08 1.51 7.97 -2.39 -0.02 1.49 16 36 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.10 2.21 6.83 -2.39 -0.02 2.20 16 38 H 0.06 2.11 6.93 -2.39 -0.02 2.09 16 Total: -1.00 -81.32 309.00 3.90 -77.42 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.08 Total: 20.07 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: 5.08 Total: 26.27 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.43 Total: -84.37 kcal Atomic # 8 Polarization: -81.10 SS G_CDS: -1.87 Total: -82.97 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -81.32 3.90 -77.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373712454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.321 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds